BAC Information

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BAC

Clone NameB6Ng01-086P16
Chromosome16 (Build37)
Map Location 23,544,001 - 23,717,123
singlet/doubletdoublet
Overlap geneRtp4
Upstream geneDgkg, LOC666459, Crygs, Tbccd1, Dnajb11, Ahsg, Fetub, Hrg, Kng2, LOC624311, LOC666486, LOC666489, Kng1, LOC666493, Eif4a2, Rfc4, Adipoq, LOC100043541, EG625835, BC106179, St6gal1, Rtp1, Masp1, LOC100043018
Downstream geneEG625969, LOC100043023, Sst, Rtp2, Bcl6, EG433009, LOC666580, LOC100043564, 1110054M08Rik, Lpp, A730098P11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-086P16.bB6Ng01-086P16.g
ACCDH900234DH900235
length478986
definitionDH900234|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P16, 5' end.DH900235|Mus musculus domesticus DNA, BAC clone: B6Ng01-086P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,716,640 - 23,717,123)(23,544,001 - 23,544,983)
sequence
atcatgccctaaaatcccaggtgttaaaaaaaagtcttggctgtcagtct
gtggcgttgctggaaagtggtgggacctttaagaggtggagtccagtagg
aagaagataggttattggcaatcagacttttaagggatattggatcactg
cacacccttcctttcatcctggccacctagaggaaagcagacctccttta
tcgtgtactgtcatgatatacaatgacatagtacagtctcatacaagcag
ttccaagtaaccaggaactgaaagcttagaactagtgagacaaaataaac
cgttgcatgtttgaagttgacttatcttgactcttttgttatctgtacag
aaagcagacagttacaaaccttataaatcttaaaatgcaaatgagtggat
attaagttattagcgggctaagaaaagctcaatcttatcatcattgtgtg
tgtgtgtgtgtgtgtgtgtgtgtgtgta
gaattcatgatctttgtggacccaaatagacaattaacttattttaatga
gactttagtgtctcatgaatattatttggcactgcctaaataaatgcttt
tccaagaaatatgtttcactctcatgctcaatgagaaatacattttacac
agtatgcactgtatggtgcatgactgaaaggaaacttgcatgggtcaata
gtttccctccctatagaacaggccaataaaacatttcagaggctttccta
caaaggatgcaaggtttcgctgtggcaagaagagtctacagaagctgtaa
tgggagaattataagcccacaaattacacatctggagatttcagcacttg
gggtgtggtagggtagaatttgttaaaaaatgggttgcacctgaaaagaa
gatctaaatataacgaatgaattacgaattacgcatacttgtaaaacagg
gccagtcatcccaggcgttattttaagtgaagaagctaaacatcaaaggc
aaatgttttatggtttcatttatatgaaacttctacaaaagcaaaacaat
agagagacaggaagcagagcagaggcttgctggggtaaaggaatgtgcag
aggaggagcgggtgctgtgtggggtaagtagagagagccctaaaacccgt
gatggctgcagaaacttcggcacactgtacactgcataaacacagggtgg
gaaggcagaggctatgggaggcacagggactgacaaaaccaagcccgacg
tggagatggcagataattctgctcatttgtactctgctctgcagacatgc
tggatttcgtctaaacctctcagtactttcttggtctcctcacaccacat
ccgcagtatcattaaaccatgtgtggtttagaaacagttgaaaaccataa
gaataggtgaacgatgcttagatttatcttggaaactaattttttttttt
ttgtattttgtaatttttttacggccaagatctcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_23716640_23717123
seq2: B6Ng01-086P16.b_49_532 (reverse)

seq1  TACACACACACACACACACACACACACACACACAATGATGATAAGATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACACACACACACACACACACACACACACAATGATGATAAGATTGA  50

seq1  GCTTTTCTTAGCCCGCTAATAACTTAATATCCACTCATTTGCATTTTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTCTTAGCCCGCTAATAACTTAATATCCACTCATTTGCATTTTAAG  100

seq1  ATTTATAAGGTTTGTAACTGTCTGCTTTCTGTACAGATAACAAAAGAGTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATAAGGTTTGTAACTGTCTGCTTTCTGTACAGATAACAAAAGAGTC  150

seq1  AAGATAAGTCAACTTCAAACATGCAACGGTTTATTTTGTCTCACTAGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATAAGTCAACTTCAAACATGCAACGGTTTATTTTGTCTCACTAGTTC  200

seq1  TAAGCTTTCAGTTCCTGGTTACTTGGAACTGCTTGTATGAGACTGTACTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCTTTCAGTTCCTGGTTACTTGGAACTGCTTGTATGAGACTGTACTA  250

seq1  TGTCATTGTATATCATGACAGTACACGATAAAGGAGGTCTGCTTTCCTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTGTATATCATGACAGTACACGATAAAGGAGGTCTGCTTTCCTCT  300

seq1  AGGTGGCCAGGATGAAAGGAAGGGTGTGCAGTGATCCAATATCCCTTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGGCCAGGATGAAAGGAAGGGTGTGCAGTGATCCAATATCCCTTAAA  350

seq1  AGTCTGATTGCCAATAACCTATCTTCTTCCTACTGGACTCCACCTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGATTGCCAATAACCTATCTTCTTCCTACTGGACTCCACCTCTTAA  400

seq1  AGGTCCCACCACTTTCCAGCAACGCCACAGACTGACAGCCAAGACTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTCCCACCACTTTCCAGCAACGCCACAGACTGACAGCCAAGACTTTTT  450

seq1  TTTAACACCTGGGATTTTAGGGCATGATGAATTC  484
      ||||||||||||||||||||||||||||||||||
seq2  TTTAACACCTGGGATTTTAGGGCATGATGAATTC  484

seq1: chr16_23544001_23544983
seq2: B6Ng01-086P16.g_69_1054

seq1  GAATTCATGATCTTTGTGGACCCAAATAGACAATTAACTTATTTTAATGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGATCTTTGTGGACCCAAATAGACAATTAACTTATTTTAATGA  50

seq1  GACTTTAGTGTCTCATGAATATTATTTGGCACTGCCTAAATAAATGCTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTAGTGTCTCATGAATATTATTTGGCACTGCCTAAATAAATGCTTT  100

seq1  TCCAAGAAATATGTTTCACTCTCATGCTCAATGAGAAATACATTTTACAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGAAATATGTTTCACTCTCATGCTCAATGAGAAATACATTTTACAC  150

seq1  AGTATGCACTGTATGGTGCATGACTGAAAGGAAACTTGCATGGGTCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATGCACTGTATGGTGCATGACTGAAAGGAAACTTGCATGGGTCAATA  200

seq1  GTTTCCCTCCCTATAGAACAGGCCAATAAAACATTTCAGAGGCTTTCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTCCCTATAGAACAGGCCAATAAAACATTTCAGAGGCTTTCCTA  250

seq1  CAAAGGATGCAAGGTTTCGCTGTGGCAAGAAGAGTCTACAGAAGCTGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATGCAAGGTTTCGCTGTGGCAAGAAGAGTCTACAGAAGCTGTAA  300

seq1  TGGGAGAATTATAAGCCCACAAATTACACATCTGGAGATTTCAGCACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAATTATAAGCCCACAAATTACACATCTGGAGATTTCAGCACTTG  350

seq1  GGGTGTGGTAGGGTAGAATTTGTTAAAAAATGGGTTGCACCTGAAAAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTGGTAGGGTAGAATTTGTTAAAAAATGGGTTGCACCTGAAAAGAA  400

seq1  GATCTAAATATAACGAATGAATTACGAATTACGCATACTTGTAAAACAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTAAATATAACGAATGAATTACGAATTACGCATACTTGTAAAACAGG  450

seq1  GCCAGTCATCCCAGGCGTTATTTTAAGTGAAGAAGCTAAACATCAAAGGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTCATCCCAGGCGTTATTTTAAGTGAAGAAGCTAAACATCAAAGGC  500

seq1  AAATGTTTTATGGTTTCATTTATATGAAACTTCTACAAAAGCAAAACAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTTTATGGTTTCATTTATATGAAACTTCTACAAAAGCAAAACAAT  550

seq1  AGAGAGACAGGAAGCAGAGCAGAGGCTTGCTGGGGTAAAGGAATGTGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGACAGGAAGCAGAGCAGAGGCTTGCTGGGGTAAAGGAATGTGCAG  600

seq1  AGGAGGAGCGGGTGCTGTGTGGGGTAAGTAGAGAGAGCCCTAAAACCCGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGAGCGGGTGCTGTGTGGGGTAAGTAGAGAGAGCCCTAAAACCCGT  650

seq1  GATGGCTGCAGAAACTTCGGCACACTGTACACTGCATAAACACAGGGTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGCTGCAGAAACTTCGGCACACTGTACACTGCATAAACACAGGGTGG  700

seq1  GAAGGCAGAGGCTATGGGAGGCACAGGGACTGACAAAACCAAGCCCGACG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGAGGCTATGGGAGGCACAGGGACTGACAAAACCAAGCCCGACG  750

seq1  TGGAGATGGCAGATAATTCTGCTCATTTGTACTCTGCTCTGCAGACATGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGATGGCAGATAATTCTGCTCATTTGTACTCTGCTCTGCAGACATGC  800

seq1  TGAATTTCGTCTAAACCTCTCAGTAC-TTCTTGGTCTCCTCACACCACAT  849
      || ||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TGGATTTCGTCTAAACCTCTCAGTACTTTCTTGGTCTCCTCACACCACAT  850

seq1  CCGCAGTATCATTAAACCATGTGTGGTTTAGAAACAGTTGAAAACCATAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGCAGTATCATTAAACCATGTGTGGTTTAGAAACAGTTGAAAACCATAA  900

seq1  GAATAGGTGAACGATGCTTAGATTTATCTTGGAAACTAA-TTTTTTTTTT  948
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  GAATAGGTGAACGATGCTTAGATTTATCTTGGAAACTAATTTTTTTTTTT  950

seq1  TTGTATTTTGTAATTTTTTTA-GGGCAAGATCTCAC  983
      ||||||||||||||||||||| || |||||||||||
seq2  TTGTATTTTGTAATTTTTTTACGGCCAAGATCTCAC  986