BAC Information

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BAC

Clone NameB6Ng01-087H20
Chromosome16 (Build37)
Map Location 50,123,676 - 50,297,249
singlet/doubletdoublet
Overlap geneLOC100043404, Bbx
Upstream geneMyh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47, EG433024, LOC100043769, LOC628951, EG224180, EG667802
Downstream geneLOC100043414, Ccdc54, LOC672778, 5330426P16Rik, EG639820
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-087H20.bB6Ng01-087H20.g
ACCDH900602DH900603
length9411,140
definitionDH900602|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H20, 5' end.DH900603|Mus musculus domesticus DNA, BAC clone: B6Ng01-087H20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,296,309 - 50,297,249)(50,123,676 - 50,124,824)
sequence
gaattccacttgtaaaaggaattcccatgttaaagatgataaaggcagtg
accatttttctcttttcttttccttgtgttttacttccttgctatgagct
ccatgatctttagaggatagtagaaactttctagagatcaatcctgttag
taaaggtatcataacaatagtggaatactcctaaagtcatttagggatgc
caagtggcaaatagcaggatggtattgtgtctagtagtattgtgtctagt
gttgtggggctccagacctgctccttcagtgtatcggctttcctggcagt
taactgggctagctcctctctgtgcctcagttccttacttcagaaatttc
cccaattattgttcttatttcatagtattattcagtgttatagttactaa
aagttagagttgtaggtacctgctatatgggtaactagagaagggaaaag
aaaggcctgtatactcttcccccaaattcttggctgtgttttagaattct
tttttcaattatagcttcaagtccagtaaaactgtagttgttcctcgtta
atctcaggaatagcaatgaccatagttacctgccaccaacacatatgcca
tatgaagtcttagtaaaatgttgaaaattattttccttaatacagaatct
aaaaaaataaaagaggaagattttaaagtatcagaaattaaaacacaact
taatgaaggtatgtagcattcaatattgtagctaatttctaaattataga
attcagtgttaattaaaccaggaggaaatgtaaacattgtgaggtaaaca
aaattaccattgcaaaggatccatggatacagttaaaactagagggaaac
ttccaccagtgtaaaggctgtggaaaggcctgagtctgtaccctctcccc
tcctctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
gaattcaatgcagcatctcatctcaccatgataccaagtaaaaatcagaa
gagttaaatgacaggaaatggtttgagattgactactggtgtcaagatag
ggatggtgatgtatatagaaacagaaggaaagtgtgaaagaatgtgaaca
cagatctctgggcgaatctctaggggacactgccctgcacagaggtttga
gatttgagggtctgttgtatatgaatccaatctgactatataagaatata
aactggcggtgaggatggataattacaggccaggatatttgaaacattct
aatttagcaattagtaacataattatttaaagttgttgaatccttttctt
caaatccaattaaaacaaaccaattaagcaggtgaatattggctgggctg
acttagcaagatggagaggcaggtgctgaggcagggaagaagattaagtc
agggttcaccggatccttgtggttcctgatcatctttttttttttttttt
tttttttttcctttccagggctctgagtggctgtagacttacggaagcca
aattttaaaacttctcctaggaaagtaagaaacatctcatttgaaaagaa
gaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaaga
agaagaagaagaagaagaagaagaagaagaagaagaagaagaagaagaag
aaatggaaagtaagacttggaagctggccattgctgtagattcctgcagg
caaagaaaaaacttgttttcacaagagctgtccagtgtggagtcgtaagc
atacgtggctcgacgttcacatccagtgttcctccaacagctgctctccc
tgttcactttcccgtggaaagaagcgctaaagctgttggtttgtttggta
tgcctttttaaaaaaagacattagcttaagctgtttatgactgtgctgtt
taatgattcatttatgataataatgtattaattctttgtactcatccctc
aagcaattctgggaagggtataaatttaaaattcaacaaaaaataaataa
aaaagctgttactgaacaagcagcattatttaagtgtgtttcataaataa
taaattttcaatttattaactaaaaaggatagctcctaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_50296309_50297249
seq2: B6Ng01-087H20.b_42_982 (reverse)

seq1  CACACACACACACACACACACACACACACACACACAGAGGAGGGGAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACACACACAGAGGAGGGGAGAGG  50

seq1  GTACAGACTCAGGCCTTTCCACAGCCTTTACACTGGTGGAAGTTTCCCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGACTCAGGCCTTTCCACAGCCTTTACACTGGTGGAAGTTTCCCTC  100

seq1  TAGTTTTAACTGTATCCATGGATCCTTTGCAATGGTAATTTTGTTTACCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTTAACTGTATCCATGGATCCTTTGCAATGGTAATTTTGTTTACCT  150

seq1  CACAATGTTTACATTTCCTCCTGGTTTAATTAACACTGAATTCTATAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATGTTTACATTTCCTCCTGGTTTAATTAACACTGAATTCTATAATT  200

seq1  TAGAAATTAGCTACAATATTGAATGCTACATACCTTCATTAAGTTGTGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAATTAGCTACAATATTGAATGCTACATACCTTCATTAAGTTGTGTT  250

seq1  TTAATTTCTGATACTTTAAAATCTTCCTCTTTTATTTTTTTAGATTCTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTCTGATACTTTAAAATCTTCCTCTTTTATTTTTTTAGATTCTGT  300

seq1  ATTAAGGAAAATAATTTTCAACATTTTACTAAGACTTCATATGGCATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGGAAAATAATTTTCAACATTTTACTAAGACTTCATATGGCATATG  350

seq1  TGTTGGTGGCAGGTAACTATGGTCATTGCTATTCCTGAGATTAACGAGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGTGGCAGGTAACTATGGTCATTGCTATTCCTGAGATTAACGAGGA  400

seq1  ACAACTACAGTTTTACTGGACTTGAAGCTATAATTGAAAAAAGAATTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTACAGTTTTACTGGACTTGAAGCTATAATTGAAAAAAGAATTCTA  450

seq1  AAACACAGCCAAGAATTTGGGGGAAGAGTATACAGGCCTTTCTTTTCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAGCCAAGAATTTGGGGGAAGAGTATACAGGCCTTTCTTTTCCCT  500

seq1  TCTCTAGTTACCCATATAGCAGGTACCTACAACTCTAACTTTTAGTAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAGTTACCCATATAGCAGGTACCTACAACTCTAACTTTTAGTAACT  550

seq1  ATAACACTGAATAATACTATGAAATAAGAACAATAATTGGGGAAATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACACTGAATAATACTATGAAATAAGAACAATAATTGGGGAAATTTCT  600

seq1  GAAGTAAGGAACTGAGGCACAGAGAGGAGCTAGCCCAGTTAACTGCCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAAGGAACTGAGGCACAGAGAGGAGCTAGCCCAGTTAACTGCCAGG  650

seq1  AAAGCCGATACACTGAAGGAGCAGGTCTGGAGCCCCACAACACTAGACAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCGATACACTGAAGGAGCAGGTCTGGAGCCCCACAACACTAGACAC  700

seq1  AATACTACTAGACACAATACCATCCTGCTATTTGCCACTTGGCATCCCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTACTAGACACAATACCATCCTGCTATTTGCCACTTGGCATCCCTA  750

seq1  AATGACTTTAGGAGTATTCCACTATTGTTATGATACCTTTACTAACAGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGACTTTAGGAGTATTCCACTATTGTTATGATACCTTTACTAACAGGA  800

seq1  TTGATCTCTAGAAAGTTTCTACTATCCTCTAAAGATCATGGAGCTCATAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTCTAGAAAGTTTCTACTATCCTCTAAAGATCATGGAGCTCATAG  850

seq1  CAAGGAAGTAAAACACAAGGAAAAGAAAAGAGAAAAATGGTCACTGCCTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAGTAAAACACAAGGAAAAGAAAAGAGAAAAATGGTCACTGCCTT  900

seq1  TATCATCTTTAACATGGGAATTCCTTTTACAAGTGGAATTC  941
      |||||||||||||||||||||||||||||||||||||||||
seq2  TATCATCTTTAACATGGGAATTCCTTTTACAAGTGGAATTC  941

seq1: chr16_50123676_50124824
seq2: B6Ng01-087H20.g_67_1206

seq1  GAATTCAATGCAGCATCTCATCTCACCATGATACCAAGTAAAAATCAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGCAGCATCTCATCTCACCATGATACCAAGTAAAAATCAGAA  50

seq1  GAGTTAAATGACAGGAAATGGTTTGAGATTGACTACTGGTGTCAAGATAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTAAATGACAGGAAATGGTTTGAGATTGACTACTGGTGTCAAGATAG  100

seq1  GGATGGTGATGTATATAGAAACAGAAGGAAAGTGTGAAAGAATGTGAACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGTGATGTATATAGAAACAGAAGGAAAGTGTGAAAGAATGTGAACA  150

seq1  CAGATCTCTGGGCGAATCTCTAGGGGACACTGCCCTGCACAGAGGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCTCTGGGCGAATCTCTAGGGGACACTGCCCTGCACAGAGGTTTGA  200

seq1  GATTTGAGGGTCTGTTGTATATGAATCCAATCTGACTATATAAGAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTGAGGGTCTGTTGTATATGAATCCAATCTGACTATATAAGAATATA  250

seq1  AACTGGCGGTGAGGATGGATAATTACAGGCCAGGATATTTGAAACATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGCGGTGAGGATGGATAATTACAGGCCAGGATATTTGAAACATTCT  300

seq1  AATTTAGCAATTAGTAACATAATTATTTAAAGTTGTTGAATCCTTTTCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCAATTAGTAACATAATTATTTAAAGTTGTTGAATCCTTTTCTT  350

seq1  CAAATCCAATTAAAACAAACCAATTAAGCAGGTGAATATTGGCTGGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATCCAATTAAAACAAACCAATTAAGCAGGTGAATATTGGCTGGGCTG  400

seq1  ACTTAGCAAGATGGAGAGGCAGGTGCTGAGGCAGGGAAGAAGATTAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAGCAAGATGGAGAGGCAGGTGCTGAGGCAGGGAAGAAGATTAAGTC  450

seq1  AGGGTTCACCGGATCCTTGTGGTTCCTGATCATCTTTTTTTTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTCACCGGATCCTTGTGGTTCCTGATCATCTTTTTTTTTTTTTTTT  500

seq1  TTTTTTTTTCCTTTCCAGGGCTCTGAGTGGCTGTAGACTTACGGAAGCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTTCCTTTCCAGGGCTCTGAGTGGCTGTAGACTTACGGAAGCCA  550

seq1  AATTTTAAAACTTCTCCTAGGAAAGTAAGAAACATCTCATTTGAAAAGAA  600
      |||||||||||||||||||||||||||||||||||||||||||||   ||
seq2  AATTTTAAAACTTCTCCTAGGAAAGTAAGAAACATCTCATTTGAA---AA  597

seq1  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA  647

seq1  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG  697

seq1  AAGAAATGGAAAGTAAGACTTGGAAGCTGGCCATTGCTGTAGATTCCTGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAATGGAAAGTAAGACTTGGAAGCTGGCCATTGCTGTAGATTCCTGC  747

seq1  AGGCAAAGAAAAAACTTGTTTCCACAAGAGCTGTCCAGTGTGGAGTCGTA  800
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  AGGCAAAGAAAAAACTTGTTTTCACAAGAGCTGTCCAGTGTGGAGTCGTA  797

seq1  AGCATACGTGGCTCGACGTTCACATCCAGTGTTCCTCCAACCAGCTGCTC  850
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  AGCATACGTGGCTCGACGTTCACATCCAGTGTTCCTCCAA-CAGCTGCTC  846

seq1  TCCCTGTTCACTTTCCCGTGGAAAGAAGCGCTAAAGCTGTTGGTTTGTTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGTTCACTTTCCCGTGGAAAGAAGCGCTAAAGCTGTTGGTTTGTTT  896

seq1  GGTATGCCTTTTTTAAAAAAGACATTAGCTTAAGCTGTTTATGACTGTTG  950
      ||||||||||||| ||||||||||||||||||||||||||||||||| ||
seq2  GGTATGCCTTTTTAAAAAAAGACATTAGCTTAAGCTGTTTATGACTG-TG  945

seq1  CTGTTTAATGATTCATTTATGATAATTAATGTATTAATTCTTTGTACTCA  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  CTGTTTAATGATTCATTTATGATAA-TAATGTATTAATTCTTTGTACTCA  994

seq1  TTCCCTCAAGCAATTCTGTGAAGGGTATAATTTTAAAAATTCAAC-AAAT  1049
       ||||||||||||||||| ||||||||||| ||| |||||||||| ||| 
seq2  -TCCCTCAAGCAATTCTGGGAAGGGTATAAATTT-AAAATTCAACAAAAA  1042

seq1  ATAAAT-AACAAGCTGTTACTGACCAAGCAGCATTATTTAAGTGCTGTTT  1098
      |||||| || ||||||||||||| |||||||||||||||||||| |||||
seq2  ATAAATAAAAAAGCTGTTACTGAACAAGCAGCATTATTTAAGTG-TGTTT  1091

seq1  CATGAATTATAATATTTCAATTCTATTAACTTAAAAGGATTAGCTTCTAA  1148
      ||| ||| ||||  |||||||| |||||||| ||||||| ||||| ||||
seq2  CATAAATAATAAATTTTCAATT-TATTAACTAAAAAGGA-TAGCTCCTAA  1139

seq1  G  1149
      |
seq2  G  1140