BAC Information

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BAC

Clone NameB6Ng01-088I21
Chromosome3 (Build37)16 (Build37)
Map Location 64,188,385 - 64,188,86664,076,904 - 64,078,067
singlet/doubletsingletsinglet
Overlap gene4930518C23Rik
Upstream genePlch1, LOC100040836, E130311K13Rik, Slc33a1, Gmps, LOC670032, EG56544, LOC380739, EG637004, EG667031
Downstream geneEG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110, Kcnab1, Ssr3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088I21.bB6Ng01-088I21.g
ACCDH901375DH901376
length9781,160
definitionDH901375|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I21, 5' end.DH901376|Mus musculus domesticus DNA, BAC clone: B6Ng01-088I21, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(64,188,385 - 64,188,866)(64,076,904 - 64,078,067)
sequence
gaattcatcttttttttttttttttgagtgtttgatgaccattgcttgga
ggttattcacactggacttagttctttctttttccacagagtcacagttc
cttctacatttgaatctcttcttgctttcagtggaagtcatacaggtcat
ggtatcttcacttaaaaaaaggattgtgaaatatcttgtagtttctcatc
tatgataatctcagttgcttttcagaagcctttaaaatcacttcctgcca
tagtggttctgaattttagtgtagaattccttgacatattgtttacaatc
caactaagtcctgggtcagatgatctgtttgcttctcagttttaaaattc
ctatttataaaaccccaaagaaatacacaggacttgccaaattgttttgc
aaatgttataatcaagttactttatgctttcttcagatatttgtgctatt
tacaagcttcaaattaacaattactttttaattttattttttattagata
ttttctttatttacatttcagatgttatctcctttcctggtttcctccac
gaaaactcctatcttctccctccccccctgccctgctcatcaacgcaccc
acttctgttccaggtcctggcattcccctacactggggcatagagccttc
acaggaccaaagacctctcttcccattgaagatcgactaggccatcctct
actacatatgcagctggagccataagtcccaacatgtgtactctttggtt
ggtggtttggttcctgggaactctggaggtactggttagttcatattgtt
gttcttcttaaagggctacaaaccccttcagctccttgggtacttcctct
agcttctccattagggaccctgtgctcattccaatggatggctatgagca
tccacttctgaatttgtcagcactggcagatcttctcagagacagctata
tcagacaggctgctgtcagcaagctctt
gaattcccttgtcatcccacagctgtatcatcatctttttgtgaaattga
tgtatgcacattacactacaattgaagattcattctttgtcgtgacagct
atcggcaagttagcttgactcactttatagctatagtacctttgctttga
aattccaaaataaagaaaatctatgtcctggtaaataatgtatagggaaa
tacattggacaaaatatgactagcattatggtccttaaaaacgaaatttt
atgaaaccagtctctttactgtgtaacacacaatcaactggcagttctgg
caagaaaaatctgtctttttgtgtgttacaatatgtaatggctgtatata
aaccttctatgttgatacaaatttccttccccatttatgtattatctgat
tttaatttacctgtgataaaggtgttcatttaatctgtacactactaagg
taaaaattattaccaattacattttgtctcataaaggtcattgtctaaga
ctttatcctaactgtaccaaattaattattgtccctttcagtcctcattc
taatttctcatttaatcattgccatcaaataagtgcattctcctttcttt
ccaacttctgcataaaggacattaaaacgagaaacaatcttgccattgga
ttctttcctcttcagtctacaatttttatgattagatttgcatgagaaat
ttctcactttccttatctttttaatttaaaaatgtgcaagaaaaatcatt
taagtacatctaagaacatataaaactcacttgtatttttaatcttgcaa
aggcataaataatctaaggaatactgaataaagtcagacataacatttta
atagcagtattgtaaacctcagtaattttacattgatcattattcatgga
tattttataattttaagttaaatatagctgtagtgcaagtactttattca
ccagatttcaagtagaatataaactgaactattcttgtaatgagaaaaga
ctatttcaaactagacaacatcctttttatattttatcaatacactagac
acttaaaggccttagaaatattttaatgggttacaaagaattcattgcac
tgacagttctttttagaaatgtgacaaaggttgcttttaatgagatctac
tttcttagag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64188385_64188866
seq2: B6Ng01-088I21.b_51_564

seq1  CATCTTTTTTTTTTTTTTT---------------------TTGGAAG---  26
      |||||||||||||||||||                     ||||| |   
seq2  CATCTTTTTTTTTTTTTTTTGAGTGTTTGATGACCATTGCTTGGAGGTTA  50

seq1  ---AGACTAGATTTA--TTTGTCATTT---------TCAAAGTT------  56
         | ||| || |||  | | || |||         ||| ||||      
seq2  TTCACACTGGACTTAGTTCTTTCTTTTTCCACAGAGTCACAGTTCCTTCT  100

seq1  ---TAGGAATATCCAATAACAAAGATTGAAATTAATTTCCTGTCATAATT  103
         |  |||| ||   |  |    | || || | | | |  |||||  | 
seq2  ACATTTGAATCTCTTCTTGCTTTCAGTGGAAGTCA-TACAGGTCATGGTA  149

seq1  TATATGAGAATTGAGCAAATG--TGACCAATTAAATA-CTTCTAGAGATT  150
      | |     | || |  ||| |  ||     | ||||| ||| |||   ||
seq2  TCT---TCACTTAAAAAAAGGATTG-----TGAAATATCTTGTAG---TT  188

seq1  TACAATTAATCATA----CAG--CCTTCTCAGATGATTTGGCAAGCTCCT  194
      |   ||  || |||    |||   ||| ||||| |  ||   || | | |
seq2  TCTCATCTATGATAATCTCAGTTGCTTTTCAGAAGCCTTTAAAATCACTT  238

seq1  AATGACAT-GTGGCTCTCAGAGTCAATAGTCTTTCGAACATTCTAGGAGG  243
        || ||| |||| ||| |   |   |||| |    |  ||||   ||  
seq2  CCTGCCATAGTGGTTCTGAATTT---TAGTGT----AGAATTCCTTGACA  281

seq1  TAAGCATCTCACATCCCTCCTCTATATCCT---TCTCCT-ACCTGTCTTC  289
      ||    |  || |||   |  |||  ||||   ||   | | |||| | |
seq2  TATTGTTTACA-ATC---CAACTAAGTCCTGGGTCAGATGATCTGTTTGC  327

seq1  CTGTCCCTGTACCCCTAAATTATCTATTCTTCCATTCTGTTTGTGCAAAG  339
       | ||  | |     |||| |  |||||  |  |  |        |||||
seq2  TTCTCAGTTT-----TAAAATTCCTATTTATAAAACC-------CCAAAG  365

seq1  TCTACAAATA-GTAGGTTT-----AATTATGACATTTCCATGTATACAAA  383
           |||||   |||  |     |||| |    ||| ||  | |    |
seq2  -----AAATACACAGGACTTGCCAAATTGT----TTTGCAAATGT---TA  403

seq1  TAACGAATTTA-TTTACCGTTTCTT---------------TTTACATTTT  417
      |||  || ||| ||||   ||||||               ||||||   |
seq2  TAATCAAGTTACTTTATGCTTTCTTCAGATATTTGTGCTATTTACAAGCT  453

seq1  TTAAATTAATTAATTAATTAATTAATTTATTATTTTTTATTAGGTATTTT  467
      | |||||||  ||||| ||  ||||||  |||||||||||||| ||||||
seq2  TCAAATTAA-CAATTACTT-TTTAATT--TTATTTTTTATTAGATATTTT  499

seq1  CTTCGTTTACATTTC  482
      |||  ||||||||||
seq2  CTTTATTTACATTTC  514

seq1: chr16_64076904_64078067
seq2: B6Ng01-088I21.g_69_1228

seq1  GAATTCCCTTGTCATCCCACAGCTGTATCATCATCTTTTTGTGAAATTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCTTGTCATCCCACAGCTGTATCATCATCTTTTTGTGAAATTGA  50

seq1  TGTATGCACATTACACTACAATTGAAGATTCATTCTTTGTCGTGACAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCACATTACACTACAATTGAAGATTCATTCTTTGTCGTGACAGCT  100

seq1  ATCGGCAAGTTAGCTTGACTCACTTTATAGCTATAGTACCTTTGCTTTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGCAAGTTAGCTTGACTCACTTTATAGCTATAGTACCTTTGCTTTGA  150

seq1  AATTCCAAAATAAAGAAAATCTATGTCCTGGTAAATAATGTATAGGGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAAAATAAAGAAAATCTATGTCCTGGTAAATAATGTATAGGGAAA  200

seq1  TACATTGGACAAAATATGACTAGCATTATGGTCCTTAAAAACGAAATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGACAAAATATGACTAGCATTATGGTCCTTAAAAACGAAATTTT  250

seq1  ATGAAACCAGTCTCTTTACTGTGTAACACACAATCAACTGGCAGTTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAACCAGTCTCTTTACTGTGTAACACACAATCAACTGGCAGTTCTGG  300

seq1  CAAGAAAAATCTGTCTTTTTGTGTGTTACAATATGTAATGGCTGTATATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAAATCTGTCTTTTTGTGTGTTACAATATGTAATGGCTGTATATA  350

seq1  AACCTTCTATGTTGATACAAATTTCCTTCCCCATTTATGTATTATCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTTCTATGTTGATACAAATTTCCTTCCCCATTTATGTATTATCTGAT  400

seq1  TTTAATTTACCTGTGATAAAGGTGTTCATTTAATCTGTACACTACTAAGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTTACCTGTGATAAAGGTGTTCATTTAATCTGTACACTACTAAGG  450

seq1  TAAAAATTATTACCAATTACATTTTGTCTCATAAAGGTCATTGTCTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAATTATTACCAATTACATTTTGTCTCATAAAGGTCATTGTCTAAGA  500

seq1  CTTTATCCTAACTGTACCAAATTAATTATTGTCCCTTTCAGTCCTCATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATCCTAACTGTACCAAATTAATTATTGTCCCTTTCAGTCCTCATTC  550

seq1  TAATTTCTCATTTAATCATTGCCATCAAATAAGTGCATTCTCCTTTCTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTCTCATTTAATCATTGCCATCAAATAAGTGCATTCTCCTTTCTTT  600

seq1  CCAACTTCTGCATAAAGGACATTAAAACGAGAAACAATCTTGCCATTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTCTGCATAAAGGACATTAAAACGAGAAACAATCTTGCCATTGGA  650

seq1  TTCTTTCCTCTTCAGTCTACAATTTTTATGATTAGATTTGCATGAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCCTCTTCAGTCTACAATTTTTATGATTAGATTTGCATGAGAAAT  700

seq1  TTCTCACTTTCCTTATCTTTTTAATTTAAAAATGTGCAAGAAAAATCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCACTTTCCTTATCTTTTTAATTTAAAAATGTGCAAGAAAAATCATT  750

seq1  TAAGTACATCTAAGAACATATAAAACTCACTTGTATTTTTAATCTTGCAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACATCTAAGAACATATAAAACTCACTTGTATTTTTAATCTTGCAA  800

seq1  AGGCATAAATAATCTAAGGAATACTGAATAAAGTCAGACATAACATTTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCATAAATAATCTAAGGAATACTGAATAAAGTCAGACATAACATTTTA  850

seq1  ATAGCAGTATTGTAAACCTCAGTAATTTTACATTGATCATTATTCATGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCAGTATTGTAAACCTCAGTAATTTTACATTGATCATTATTCATGGA  900

seq1  TATTTTATAATTTTAAGTTAAATATAGCTGTAGTGGCAAGTACTTTATTC  950
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  TATTTTATAATTTTAAGTTAAATATAGCTGTAGT-GCAAGTACTTTATTC  949

seq1  ACCAGATTTCAAAGTAGAATATATACTGAACTA-TCCTGTAATGAGAAAA  999
      |||||||||| |||||||||||| ||||||||| || |||||||||||||
seq2  ACCAGATTTC-AAGTAGAATATAAACTGAACTATTCTTGTAATGAGAAAA  998

seq1  GACTATTTCAAAACTAGACAAACAT-CTTTTTATATTTTATCAATACACT  1048
      ||||||||| ||||||||| ||||| ||||||||||||||||||||||||
seq2  GACTATTTC-AAACTAGAC-AACATCCTTTTTATATTTTATCAATACACT  1046

seq1  AGACACTTAAGGGCCTTAGAAATA-TTTAATGGGTTACACAGATATCATT  1097
      |||||||||| ||||||||||||| |||||||||||||| |||  |||||
seq2  AGACACTTAAAGGCCTTAGAAATATTTTAATGGGTTACAAAGAATTCATT  1096

seq1  GCAACTGACAGTTCTTTTTAGAAAATGTGACAAAGTTTGCTTATTAATAG  1147
      || |||||||||||||||||| ||||||||||||| |||||| ||||| |
seq2  GC-ACTGACAGTTCTTTTTAG-AAATGTGACAAAGGTTGCTT-TTAAT-G  1142

seq1  AAATCCA-TCTCTTAGAG  1164
      | ||| | | ||||||||
seq2  AGATCTACTTTCTTAGAG  1160