BAC Information

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BAC

Clone NameB6Ng01-088N03
Chromosome16 (Build37)
Map Location 79,296,540 - 79,433,546
singlet/doubletdoublet
Overlap genenone
Upstream geneCxadr, Btg3, D16Ertd472e, LOC100039605, 4930570E03Rik, Chodl, Prss7
Downstream geneEG383172, 1700066C05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088N03.bB6Ng01-088N03.g
ACCDH901570DH901571
length1,2321,096
definitionDH901570|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N03, 5' end.DH901571|Mus musculus domesticus DNA, BAC clone: B6Ng01-088N03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(79,296,540 - 79,297,812)(79,432,446 - 79,433,546)
sequence
gaattcatctaaaaataaccatttcttttcccagattaaattttactgtt
tctttctttcttcttcatttgttttaatttttattgttattttgtttatt
tacatttcaaatgttatcccccttctcagtttcctccctgaaaacattca
acccaacctctgccccccaccctgctgcctctaggagggtgcacccccac
ccacccacctactcctgctacatcctagcattcccctatgctggggcatt
aagctttcataggaccaagggcctctccatatgcagctggagtcatgggt
ccctctatgtgtattctttggttggtggtctagttcctgggagctctgag
gggtctggttgattgatattgttgtttttcctatggagttgcaaactcct
tcagctccttcagtctttcccctaattcctccattgtggtcatgtactca
gtcccatggttggctgcaagcatctgcatctgtatcagtaaggctctagc
ctagcctctcaggagacatgcatatcctgtcagcaagcacttcttggcat
cacaatagtgtctgggtttggtgtctgcatatgggatggatccccatgtg
ggacagtatctggatggccttcccttcagtctctgctccactcttttccc
ccatattttctttagaaaggagcaattctgggttaaaattttgagaagag
agggtggctccatccctcaaccaggagccatgtctaacctctggatatgg
tctctataggttatctctcccatttgttgggtatttgcttttccaaaata
tacaaataacttaagaaattagactcaagagaaacaaattaacctctttc
ggagaagaaactaggaaagaggttagcatttaaattgtatatgaagaaat
atctaataaaaattaaaacaaaaaagagtttactgctccaaagtccctct
atgcaacagcaagagatatttggataaaaagagagcttctagcattagtt
atttacttattccctgctgttaagctacaggtgtaattgctagccagagc
tttaactcctcagaaagaaacagaaagtttttagaacttttggattattt
atcagcatccgcgagtggagagctggactcgaaaccaccagccattaagc
catctggattctgactcaggtccaggttactgttcaagcttaagccgttg
gacccaacccaacctcttgtgttgggattttt
gaattcctacttatagttaaaatcagacacttcaagaagtttaaccaagt
cagtatccctgcatgtgtgcaagcctctcgagaggtatacagatttgact
tgtgttaaaaccatttgcagtttctgactgtagaagagatttacctctaa
acttaaagccataggcatttcaatggtttaaggcccacccacataatcca
tactgaaactcctttctagagacaggctgcacatctctgaagtgtgattt
gtagcctacagttttccagagtagaaaaatctcctcttttcaccttccct
tctgctgtcttttgtggtcacctcattggttccactatttttgttttctt
tcataaactcaggttctatgaaggtgtgcagatgaacatattctcttatt
ccacataggtcgctgtgggagtctaataagattcaattgatcgaaattca
aaacaaatcattctttgctttttcttccaaaaagattaaatcttcaggtt
ataaggtgtcaaaacccccctaagtggatacttgtgaagatacagcaaac
tcttagagaaaggacatataaaggtggaataaaccaaagaactcacatca
gcattaacacaaagaaacaaacattacaaactcctggctctagcatccat
atttccacacaaagtattcaatgtacttgcttgaactccactaaattctc
ttggaggaatcttggtgtatatcatcaataaaaactgccctccccaaaat
gaattttatactacttaaacatgaatttaagaccaactagctcttacctg
gttagtatattttgaaagtgccaattatacataattattcattttgtaaa
tcataacttatatatttgcttagaaattcattggctagctattttcagac
atgaaatacaaactcgactcttgtattgattttaaaatatatctatattt
ttatgattggtcaaaggtacttttgaatatgttaacatcataaagaacat
aaaagtgttcagttgctcctccaaaatacgtagactatgtttgtttaaaa
gcctgttcatttcattatgatttactatgtcacagtaaatcatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_79296540_79297812
seq2: B6Ng01-088N03.b_47_1278

seq1  GAATTCATCTAAAAATAACCATTTCTTTTCCCAGATTAAATTTTACTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAAAAATAACCATTTCTTTTCCCAGATTAAATTTTACTGTT  50

seq1  TCTTTCTTTCTTCTTCATTTGTTTTAATTTTTATTGTTATTTTGTTTATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTCTTCATTTGTTTTAATTTTTATTGTTATTTTGTTTATT  100

seq1  TACATTTCAAATGTTATCCCCCTTCTCAGTTTCCTCCCTGAAAACATTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTCAAATGTTATCCCCCTTCTCAGTTTCCTCCCTGAAAACATTCA  150

seq1  ACCCAACCTCTGCCCCCCACCCTGCTGCCTCTAGGAGGGTGCACCCCCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACCTCTGCCCCCCACCCTGCTGCCTCTAGGAGGGTGCACCCCCAC  200

seq1  CCACCCACCTACTCCTGCTACATCCTAGCATTCCCCTATGCTGGGGCATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACCTACTCCTGCTACATCCTAGCATTCCCCTATGCTGGGGCATT  250

seq1  AAGCTTTCATAGGACCAAGGGCCTCTCCATATGCAGCTGGAGTCATGGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTCATAGGACCAAGGGCCTCTCCATATGCAGCTGGAGTCATGGGT  300

seq1  CCCTCTATGTGTATTCTTTGGTTGGTGGTCTAGTTCCTGGGAGCTCTGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTATGTGTATTCTTTGGTTGGTGGTCTAGTTCCTGGGAGCTCTGAG  350

seq1  GGGTCTGGTTGATTGATATTGTTGTTTTTCCTATGGAGTTGCAAACTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTCTGGTTGATTGATATTGTTGTTTTTCCTATGGAGTTGCAAACTCCT  400

seq1  TCAGCTCCTTCAGTCTTTCCCCTAATTCCTCCATTGTGGTCATGTACTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTCCTTCAGTCTTTCCCCTAATTCCTCCATTGTGGTCATGTACTCA  450

seq1  GTCCCATGGTTGGCTGCAAGCATCTGCATCTGTATCAGTAAGGCTCTAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCATGGTTGGCTGCAAGCATCTGCATCTGTATCAGTAAGGCTCTAGC  500

seq1  CTAGCCTCTCAGGAGACATGCATATCCTGTCAGCAAGCACTTCTTGGCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGCCTCTCAGGAGACATGCATATCCTGTCAGCAAGCACTTCTTGGCAT  550

seq1  CACAATAGTGTCTGGGTTTGGTGTCTGCATATGGGATGGATCCCCATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAATAGTGTCTGGGTTTGGTGTCTGCATATGGGATGGATCCCCATGTG  600

seq1  GGACAGTATCTGGATGGCCTTCCCTTCAGTCTCTGCTCCACTCTTTTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAGTATCTGGATGGCCTTCCCTTCAGTCTCTGCTCCACTCTTTTCCC  650

seq1  CCATATTTTCTTTAGAAAGGAGCAATTCTGGGTTAAAATTTTGAGAAGAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATATTTTCTTTAGAAAGGAGCAATTCTGGGTTAAAATTTTGAGAAGAG  700

seq1  AGGGTGGCTCCATCCCTCAACCAGGAGCCATGTCTAACCTCTGGATATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGGCTCCATCCCTCAACCAGGAGCCATGTCTAACCTCTGGATATGG  750

seq1  TCTCTATAGGTTATCTCTCCCATTTGTTGGGTATTTGCTTTTCCAAAATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTATAGGTTATCTCTCCCATTTGTTGGGTATTTGCTTTTCCAAAATA  800

seq1  TACAAATAACTTAAGAAATTAGACTCAAGAGAAACAAATTAACCTCTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAATAACTTAAGAAATTAGACTCAAGAGAAACAAATTAACCTCTTTC  850

seq1  GGAGAAGAAACTAGGAAAGAGGTTAGCATTTAAATTGTATATGAAGAAAA  900
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GGAGAAGAAACTAGGAAAGAGGTTAGCATTTAAATTGTATATGAAG-AAA  899

seq1  TATCTAATAAAAAATTAAAAACAAAAAAAGAAGTTTACTGCTCCAAAAGT  950
      |||||||||||||  | |||||||||||   ||||||||||||| |||||
seq2  TATCTAATAAAAA--TTAAAACAAAAAA--GAGTTTACTGCTCC-AAAGT  944

seq1  CCCTCTATGCAAACAAGCAAGAGATAATTTGGATAAAAAAGAAGAGGCTC  1000
      ||||||||||||   |||||||||| |||||||||||||   ||||  ||
seq2  CCCTCTATGCAA--CAGCAAGAGAT-ATTTGGATAAAAA--GAGAGCTTC  989

seq1  TAGCAATTAGTTATTTACTTAATTCCCTGCTGTTAGGCTACAGGTGTTAA  1050
      |||| ||||||||||||||| |||||||||||||| |||||||||| |||
seq2  TAGC-ATTAGTTATTTACTT-ATTCCCTGCTGTTAAGCTACAGGTG-TAA  1036

seq1  TTGCCTAAGCCAGAAGCTTTTAACT-CTCAGAAAGAACAAGAAAGTTTTT  1099
      ||||   |||||| ||| ||||||| |||||||||||  |||||||||||
seq2  TTGC--TAGCCAG-AGC-TTTAACTCCTCAGAAAGAAACAGAAAGTTTTT  1082

seq1  AGAACTTTTTAGAATTTATTATCAGCATTCAGCAGAGTTAGAGAGCTAGA  1149
      |||||||||  | |||  ||||||||| || || ||| | ||||||| ||
seq2  AGAACTTTT--GGATTATTTATCAGCA-TCCGC-GAG-TGGAGAGCTGGA  1127

seq1  ACATCCAGAGACCACCAGCATTTAGAGCCACATCT-GAGTCTGACTCAGT  1198
          |  || |||||||||  ||| |||  ||||| || |||||||||| 
seq2  ----CTCGAAACCACCAGCCATTA-AGC--CATCTGGATTCTGACTCAG-  1169

seq1  GTCTAGTTTCAACTTGCTCCAAGCTAGAGGCTGTTGGCAGCCAACAACAA  1248
      ||| || ||  |||   | ||||||  | || ||||| | |||||  | |
seq2  GTCCAGGTT--ACT--GTTCAAGCT-TAAGCCGTTGG-ACCCAAC--CCA  1211

seq1  ACACATTCTTGGTGTTGGGATTTTT  1273
      ||    |||| ||||||||||||||
seq2  AC---CTCTT-GTGTTGGGATTTTT  1232

seq1: chr16_79432446_79433546
seq2: B6Ng01-088N03.g_67_1162 (reverse)

seq1  AGCATTGATTTAATTGTGACATAGTAAATCATAATGAAATGAACAGGCTT  50
      |||| |||||| | ||||||||||||||||||||||||||||||||||||
seq2  AGCA-TGATTT-ACTGTGACATAGTAAATCATAATGAAATGAACAGGCTT  48

seq1  TTAAAACAAACATTAGTCTACGTATTTTTGGAGGGGCAACTGAACACTTT  100
      || ||||||||| ||||||||||| ||||||||| |||||||||||||||
seq2  TT-AAACAAACA-TAGTCTACGTA-TTTTGGAGGAGCAACTGAACACTTT  95

seq1  TATGTTCTTTATGATGTTAACATATTCAAAAGTACCTTTGACCAATCAT-  149
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TATGTTCTTTATGATGTTAACATATTCAAAAGTACCTTTGACCAATCATA  145

seq1  AAAATATAGATATATTTTAAAATCAATAACAAGAGTCGAGTTTGTATTTC  199
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAATATAGATATATTTTAAAATCAAT-ACAAGAGTCGAGTTTGTATTTC  194

seq1  ATGTCTTGAAATAGCTAGCCAATGAATTTCTAAGCAAATATATAAGTTAT  249
      ||||||  ||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCTGAAAATAGCTAGCCAATGAATTTCTAAGCAAATATATAAGTTAT  244

seq1  GATTTACAAAATGAATAATTATGTATAATTGGCACTTTCAAAATATACTA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTACAAAATGAATAATTATGTATAATTGGCACTTTCAAAATATACTA  294

seq1  ACCAGGTAAGAGCTAGTTGGTCTTAAATTCATGTTTAAGTAGTATAAAAT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTAAGAGCTAGTTGGTCTTAAATTCATGTTTAAGTAGTATAAAAT  344

seq1  TCATTTTGGGGAGGGCAGTTTTTATTGATGATATACACCAAGATTCCTCC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTGGGGAGGGCAGTTTTTATTGATGATATACACCAAGATTCCTCC  394

seq1  AAGAGAATTTAGTGGAGTTCAAGCAAGTACATTGAATACTTTGTGTGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATTTAGTGGAGTTCAAGCAAGTACATTGAATACTTTGTGTGGAA  444

seq1  ATATGGATGCTAGAGCCAGGAGTTTGTAATGTTTGTTTCTTTGTGTTAAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGCTAGAGCCAGGAGTTTGTAATGTTTGTTTCTTTGTGTTAAT  494

seq1  GCTGATGTGAGTTCTTTGGTTTATTCCACCTTTATATGTCCTTTCTCTAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTGAGTTCTTTGGTTTATTCCACCTTTATATGTCCTTTCTCTAA  544

seq1  GAGTTTGCTGTATCTTCACAAGTATCCACTTAGGGGGGTTTTGACACCTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTTGCTGTATCTTCACAAGTATCCACTTAGGGGGGTTTTGACACCTT  594

seq1  ATAACCTGAAGATTTAATCTTTTTGGAAGAAAAAGCAAAGAATGATTTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGAAGATTTAATCTTTTTGGAAGAAAAAGCAAAGAATGATTTGT  644

seq1  TTTGAATTTCGATCAATTGAATCTTATTAGACTCCCACAGCGACCTATGT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAATTTCGATCAATTGAATCTTATTAGACTCCCACAGCGACCTATGT  694

seq1  GGAATAAGAGAATATGTTCATCTGCACACCTTCATAGAACCTGAGTTTAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATAAGAGAATATGTTCATCTGCACACCTTCATAGAACCTGAGTTTAT  744

seq1  GAAAGAAAACAAAAATAGTGGAACCAATGAGGTGACCACAAAAGACAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGAAAACAAAAATAGTGGAACCAATGAGGTGACCACAAAAGACAGCA  794

seq1  GAAGGGAAGGTGAAAAGAGGAGATTTTTCTACTCTGGAAAACTGTAGGCT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAAGGTGAAAAGAGGAGATTTTTCTACTCTGGAAAACTGTAGGCT  844

seq1  ACAAATCACACTTCAGAGATGTGCAGCCTGTCTCTAGAAAGGAGTTTCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCACACTTCAGAGATGTGCAGCCTGTCTCTAGAAAGGAGTTTCAG  894

seq1  TATGGATTATGTGGGTGGGCCTTAAACCATTGAAATGCCTATGGCTTTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGATTATGTGGGTGGGCCTTAAACCATTGAAATGCCTATGGCTTTAA  944

seq1  GTTTAGAGGTAAATCTCTTCTACAGTCAGAAACTGCAAATGGTTTTAACA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGAGGTAAATCTCTTCTACAGTCAGAAACTGCAAATGGTTTTAACA  994

seq1  CAAGTCAAATCTGTATACCTCTCGAGAGGCTTGCACACATGCAGGGATAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCAAATCTGTATACCTCTCGAGAGGCTTGCACACATGCAGGGATAC  1044

seq1  TGACTTGGTTAAACTTCTTGAAGTGTCTGATTTTAACTATAAGTAGGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTTGGTTAAACTTCTTGAAGTGTCTGATTTTAACTATAAGTAGGAAT  1094

seq1  TC  1101
      ||
seq2  TC  1096