BAC Information

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BAC

Clone NameB6Ng01-088O17
ChromosomeX (Build37)16 (Build37)
Map Location 105,554,551 - 105,555,09024,942,701 - 24,942,817
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneItm2a, 4933401B06Rik, Tbx22, 2610002M06Rik, Gm732
Downstream geneGm378, LOC668516, Gm379, Brwd3, 5730416F02Rik, Nsbp1, Sh3bgrl, EG622976, LOC100042831
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088O17.bB6Ng01-088O17.g
ACCDH901639DH901640
length786935
definitionDH901639|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O17, 5' end.DH901640|Mus musculus domesticus DNA, BAC clone: B6Ng01-088O17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(105,554,551 - 105,555,090)(24,942,701 - 24,942,817)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggattttg
tcaaatgctttctcagcgtctaacaagatgatcatgtggtttttgtcttt
gagtttgtttatatactggattatgttgatggatttctgtatattgaacc
atccctgcatccctgggatgaaacctacttggtcaggatggatgattgtt
ttgatgtgttcttggattcggttagcaagaactttattgaggatttttgc
atcgatattcataagggaaattggtctgaagttctctatctttgttgggt
ctttttgtggtttaagtatcagagtaatagtggcttcatagaatgagttg
ggtagagtaccattcgtttctattttgtggaatagtttgtgaagaactag
aattaggtcttctttgaaggtctgatagaactctgcactaaacccatctg
gtcctgggctctttttggttgggagactattaatgactgcttctattgct
ttaggggatataggactgtttagatcattaacctgatcttttcttgatta
aaaaaacagtccgcatatgggtacttgtggagagttcttataacatgtac
atcaccattgataaagaatgaggtagatagatagtagatacatagataga
tataacatgaagtttcaggaaaaggagaatgaattgaactgtatttgatc
atgtcatatgatatatatatatatatatatatatatatatatatatatat
atgtgtagacaaatatgcacacagcgggcgataaat
gaattctttgtttagctctgtaccctattttttaatacggttatttgatt
ttctgaagtccatcttcttgagttctttatatatattggatattaatccc
ctatatgatttaggataggtaaagatccttttccaatctgttggtcgcct
ttttgtcttattgacagtgtcttttaccttacagaagctttgcaatttta
tgaggtcccatttgtcgattctcaatcttacaacacaagccattgctgtt
ctgttcacgaatttttaccctgtgcccatatagtactaccagaagaccca
gcaattcctctccagggcatatacccagaagatgttccaactggtaatag
gacatgctccactatgttcatagcagccttatttctaatagccagaagtt
caaaagaacccagatgtccttcaacagagcaatggatacagaaaatgtgg
tacatttacacaatggagtactactcagcaattaaaaacaatgaattcat
gaaattcttaggcaaatggatggatctggaggatatcaacctgagttagg
taacccaatcacaaaagaacacacatggtatgccctcactgataagcgga
tattagtccagaaacttagaatatctgagatgcaatttgcaaaacacatg
aaactcacaaaggaagaccaaagtgtgaatactttgctccttcttagaat
ggggaacaaaatacccatggaaggagttacagagacaaagtttggagcta
agatggaaggaaaaaccatctagagactgttccaccctggcatccatccc
atatacaactaccaaacccagacactattgcatatgccagaaagattttg
ctgacaggaccctgatatagctctctcttgtgagtctatgccaatgacag
caagtacagaagtggatgcttcacagtcatttatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chrX_105554551_105555090
seq2: B6Ng01-088O17.b_47_586 (reverse)

seq1  AAGATCAGGTTAATGATCTAAGACGTCTTATATCCCCTAAAGAAATAGAA  50
      |||||||||||||||||||||   ||| |||||||||||||| |||||||
seq2  AAGATCAGGTTAATGATCTAAACAGTCCTATATCCCCTAAAGCAATAGAA  50

seq1  GCAGTCATTAATAGTCTCCCAACCAAAAAAAGCCCAGGACCAGATGGGTT  100
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  GCAGTCATTAATAGTCTCCCAACCAAAAAGAGCCCAGGACCAGATGGGTT  100

seq1  TAGTGCAGAGTTCTGTCAGACCTTCAAAGAAGACCTAATTCCAGTTCTTC  150
      |||||||||||||| |||||||||||||||||||||||||| ||||||||
seq2  TAGTGCAGAGTTCTATCAGACCTTCAAAGAAGACCTAATTCTAGTTCTTC  150

seq1  ACAAACTATTCCACAAAATAGAAACGGAAGGTACTCTACCCAACTCATTC  200
      |||||||||||||||||||||||||| | |||||||||||||||||||||
seq2  ACAAACTATTCCACAAAATAGAAACGAATGGTACTCTACCCAACTCATTC  200

seq1  TATGAAGCCACAATTACTCTGATACCTAAACCACAAAAAGACCCCACAAA  250
      ||||||||||| ||||||||||||| |||||||||||||||||| |||||
seq2  TATGAAGCCACTATTACTCTGATACTTAAACCACAAAAAGACCCAACAAA  250

seq1  GATAGAGAACATCAGACCAATTTCAATTATGAATATCGATGCAAAAATCC  300
      |||||||||| |||||||||||||  ||||||||||||||||||||||||
seq2  GATAGAGAACTTCAGACCAATTTCCCTTATGAATATCGATGCAAAAATCC  300

seq1  TCAATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAAAGTTCTTGCTAACCGAATCCAAGAACACATCAAAACAATCATC  350

seq1  CATCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCTGACCAAGTAGGTTTCATCCCAGGGATGCAGGGATGGTTCAATAT  400

seq1  ACGGAAATCCATCAACGTAATCCAGTATATAAACAAACTCAAAGACAAAA  450
      || ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  ACAGAAATCCATCAACATAATCCAGTATATAAACAAACTCAAAGACAAAA  450

seq1  ACCACATGATCATCTCCTTAGATGCTGAGAAAGCATTTGACAAAATCCAA  500
      |||||||||||||||  ||||| |||||||||||||||||||||||||||
seq2  ACCACATGATCATCTTGTTAGACGCTGAGAAAGCATTTGACAAAATCCAA  500

seq1  AACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  540
       |||||||||||||||||||||||||||||||||||||||
seq2  CACCCATTCATGATAAAAGTCTTGGAAAGATCAGGAATTC  540

seq1: chr16_24942701_24942817
seq2: B6Ng01-088O17.g_696_810 (reverse)

seq1  AACTTTGTCTCTGTAACTCCTTCCATGGGT-GATTGTTTCCAATTCTAAG  49
      ||||||||||||||||||||||||||||||   ||||| || ||||||||
seq2  AACTTTGTCTCTGTAACTCCTTCCATGGGTATTTTGTTCCCCATTCTAAG  50

seq1  AAGGGGCAAAGTGTCCACACTTTGGTCTTCGTTCTTCTTCAGTTTCATGT  99
      |||| ||||||| | |||||||||||||||   |||  | ||||||||||
seq2  AAGGAGCAAAGTATTCACACTTTGGTCTTC---CTTTGTGAGTTTCATGT  97

seq1  GTTTTGCAAATTGTATCT  117
      ||||||||||||| ||||
seq2  GTTTTGCAAATTGCATCT  115