BAC Information

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BAC

Clone NameB6Ng01-088P07
Chromosome16 (Build37)
Map Location 89,689,618 - 89,880,233
singlet/doubletdoublet
Overlap geneTiam1
Upstream gene2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
Downstream geneLOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-088P07.bB6Ng01-088P07.g
ACCDH901667DH901668
length1,1481,165
definitionDH901667|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P07, 5' end.DH901668|Mus musculus domesticus DNA, BAC clone: B6Ng01-088P07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,878,877 - 89,880,233)(89,689,618 - 89,690,784)
sequence
gaattccagggatgatgaaggggggaaaaaaaaaggaattgagacaggag
agctgatagcgtatatttaaatttatgtaggtatattttgaatatgtaaa
tggtagctaatggcagagtcttgtcaaaaaattggcattttcaaataata
tatgacatagaaaatgcttaaggaattaagtataaagagtactttaaaat
tatatatagtaatccccccacttttttttttaactattgtgcatacattt
gtggcaatcagaggaaactttatgcagtccccttttttcttgcaccttta
tgtgcattctggggattgaacttagttcatatgtttgtgtagcccgtgag
taaaccctctgagtgacctgcctggcctccttaaggacttctgtgtttgt
gtgtgcacgtgcacgtgtatgtactcgcgcatggcagagggaggggaaat
tgccttttaaccagcgtgattttccatcgatctgctcctttctacatcac
gcacgagtggtttctctttatagattcctgttgtaaccaagagccttgtg
ctgtcaagggcttggcagttcctataatgtttggtcttctctgggattaa
ggagaggggtgaaatggacgcggagtagcttgagtggaagttgtggatca
gttctgtagtcgatcctgcccagaactgaggcctcgttgtgaccatgtgt
taggtaaatagggcttgctctcctagttgtgatcatgtgttagataacta
gggcttgctctcctagttgtgaccatgtgtttggtaactagggcttgctc
tcctagttgtgatcatgtgttaggtaactagggcttgctctcctagttgt
gatcacgtgttgggtaactagggcttgctctcctagttgtgaccatgtgt
taggtaactagggcttgctctcctagttgtgatcacgtgttgggtaacta
gggcttgctctcctagtggtgatcatgtgttaggtaactagggcttgctc
ttctagttgtgatcatgtgttaggtaactagggttgctctcttagtttgt
ggacatgttttaggtactagggctgcttctctagttggatcctgtgttgg
gtactaggcttgctctcctatttggacatgtgtaggaactagggcttg
gaattctcagctcctactgcaccatgcctgcctggatgctgccatgttcc
caccttgatggtaatggactgaacctctgaatctgtaagccagccccagt
taaatgttgttttttataagacttgccttggttgtggtgtctgttcacag
cagtaacaccctaactaatacaatatcccaagtcacatggaaaagaaggc
aacagagattccccaatccaactcaacattctaacactttgtcccgagta
agcccctcccatcatcctgatgcccaggaaatccagcccagcaccaactg
agacatacctatattccgagtcctgcctgaggtccagagtggtcaactta
catagggatccttctcaatgctcagcatcaatcaatcacgacatgttccc
catgggatggatctacagttcagtgaaaggaggacatgcaaatgtgtaag
gagtggctatcagtaaaacagcacttagcagatgagggaataaaactgag
actatctaagaatcaatgtaagccctaagtatattcctagagtcttcccc
tctccataattcaaataaaaaacaaattaaactcactgtgaagtttcata
tccactacggtggccatgttttaatttaaaaaaaacaaatcatcagcaca
tcaagggagccatgatgagaatggcatgcatagcttgttattattgacag
aaactaccttttcacaaaataattttcctagatcagttcagataggtagt
cgtatcttttgatatacatgttttatttcatggatcacacaagaaagtaa
ttcatctgtgttaggtacagcttttgctaccccacctaagctccaggaac
agaccaaactaccagctccctgcccagagaatattggatccacagatgaa
aaacacaaatacacacagtagttcaatttcagtttgccttattggcacaa
tggctgggtgcccccaatctactcagctagctagcatgcccttcccaaac
acctagctcagcactctaaactgcacgcaggctcagctgctcttgcacct
tcaccccagctcaacgtccccaaagccacaagttagaaacgtctgtggct
gctgcacctaagaactcacctagctagggtggcctttttctctccaaagc
ctgttgaaactttcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_89878877_89880233
seq2: B6Ng01-088P07.b_48_1195 (reverse)

seq1  CAAGCCCTAGTTTCCCAACACATGGTCACAACTAGGAGAGCAAGCCCTAG  50
                                                        
seq2  --------------------------------------------------  0

seq1  TTACCCAACACGTGATCACAACTAGGAGAGCAAGCCCTAGTTTCCCAACA  100
                                                        
seq2  --------------------------------------------------  0

seq1  CATGATCACAACTAGGAGAGCAAGCCCTAGTTACCCAACACATGATCACA  150
                                                        
seq2  --------------------------------------------------  0

seq1  ACTAGGAGAGCAAGCCCTAGTTACCTAACACATGGTCACAACTAGGAGAG  200
                                                        
seq2  --------------------------------------------------  0

seq1  CAAGCCCTAGTACCCTAACACATGGTCACAACTAGGAGAGCAAGCCCTAG  250
      ||||||||||| ||   |||||| ||| ||| |||||||||||| |||||
seq2  CAAGCCCTAGTTCC--TACACAT-GTC-CAAATAGGAGAGCAAG-CCTAG  45

seq1  TTACCCAACACGTGATCACAACTAGGAGAGCAAGCCCTAGTTACCTAACA  300
       ||||||||||  |||| |||||| ||||   |||||||| ||||||| |
seq2  -TACCCAACACAGGATC-CAACTA-GAGAAGCAGCCCTAG-TACCTAAAA  91

seq1  CATGGTCAC-AACTAGGAGAGCAAGCCCTAGTTACCCAACACATGATCAC  349
      ||||  ||| ||||| |||||||| ||||||||||| |||||||||||||
seq2  CATGTCCACAAACTAAGAGAGCAA-CCCTAGTTACCTAACACATGATCAC  140

seq1  AACTAGGAGAGCAAGCCCTAGTTACCTAACACATGATCACAACTAGGAGA  399
      |||||| ||||||||||||||||||||||||||||||||| |||||||||
seq2  AACTAGAAGAGCAAGCCCTAGTTACCTAACACATGATCACCACTAGGAGA  190

seq1  GCAAGCCCTAGTTACCCAACACGTGATCACAACTAGGAGAGCAAGCCCTA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCTAGTTACCCAACACGTGATCACAACTAGGAGAGCAAGCCCTA  240

seq1  GTTACCTAACACATGGTCACAACTAGGAGAGCAAGCCCTAGTTACCCAAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACCTAACACATGGTCACAACTAGGAGAGCAAGCCCTAGTTACCCAAC  290

seq1  ACGTGATCACAACTAGGAGAGCAAGCCCTAGTTACCTAACACATGATCAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGATCACAACTAGGAGAGCAAGCCCTAGTTACCTAACACATGATCAC  340

seq1  AACTAGGAGAGCAAGCCCTAGTTACCAAACACATGGTCACAACTAGGAGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAGAGCAAGCCCTAGTTACCAAACACATGGTCACAACTAGGAGA  390

seq1  GCAAGCCCTAGTTATCTAACACATGATCACAACTAGGAGAGCAAGCCCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGCCCTAGTTATCTAACACATGATCACAACTAGGAGAGCAAGCCCTA  440

seq1  TTTACCTAACACATGGTCACAACGAGGCCTCAGTTCTGGGCAGGATCGAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCTAACACATGGTCACAACGAGGCCTCAGTTCTGGGCAGGATCGAC  490

seq1  TACAGAACTGATCCACAACTTCCACTCAAGCTACTCCGCGTCCATTTCAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAACTGATCCACAACTTCCACTCAAGCTACTCCGCGTCCATTTCAC  540

seq1  CCCTCTCCTTAATCCCAGAGAAGACCAAACATTATAGGAACTGCCAAGCC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCCTTAATCCCAGAGAAGACCAAACATTATAGGAACTGCCAAGCC  590

seq1  CTTGACAGCACAAGGCTCTTGGTTACAACAGGAATCTATAAAGAGAAACC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACAGCACAAGGCTCTTGGTTACAACAGGAATCTATAAAGAGAAACC  640

seq1  ACTCGTGCGTGATGTAGAAAGGAGCAGATCGATGGAAAATCACGCTGGTT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGTGCGTGATGTAGAAAGGAGCAGATCGATGGAAAATCACGCTGGTT  690

seq1  AAAAGGCAATTTCCCCTCCCTCTGCCATGCGCGAGTACATACACGTGCAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGCAATTTCCCCTCCCTCTGCCATGCGCGAGTACATACACGTGCAC  740

seq1  GTGCACACACAAACACAGAAGTCCTTAAGGAGGCCAGGCAGGTCACTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACACACAAACACAGAAGTCCTTAAGGAGGCCAGGCAGGTCACTCAG  790

seq1  AGGGTTTACTCACGGGCTACACAAACATATGAACTAAGTTCAATCCCCAG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTACTCACGGGCTACACAAACATATGAACTAAGTTCAATCCCCAG  840

seq1  AATGCACATAAAGGTGCAAGAAAAAAGGGGACTGCATAAAGTTTCCTCTG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACATAAAGGTGCAAGAAAAAAGGGGACTGCATAAAGTTTCCTCTG  890

seq1  ATTGCCACAAATGTATGCACAATAGTTAAAAAAAAAAGTGGGGGGATTAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCACAAATGTATGCACAATAGTTAAAAAAAAAAGTGGGGGGATTAC  940

seq1  TATATATAATTTTAAAGTACTCTTTATACTTAATTCCTTAAGCATTTTCT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAATTTTAAAGTACTCTTTATACTTAATTCCTTAAGCATTTTCT  990

seq1  ATGTCATATATTATTTGAAAATGCCAATTTTTTGACAAGACTCTGCCATT  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATATATTATTTGAAAATGCCAATTTTTTGACAAGACTCTGCCATT  1040

seq1  AGCTACCATTTACATATTCAAAATATACCTACATAAATTTAAATATACGC  1299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTACCATTTACATATTCAAAATATACCTACATAAATTTAAATATACGC  1090

seq1  TATCAGCTCTCCTGTCTCAATTCCTTTTTTTTTCCCCCCTTCATCATCCC  1349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGCTCTCCTGTCTCAATTCCTTTTTTTTTCCCCCCTTCATCATCCC  1140

seq1  TGGAATTC  1357
      ||||||||
seq2  TGGAATTC  1148

seq1: chr16_89689618_89690784
seq2: B6Ng01-088P07.g_69_1233

seq1  GAATTCTCAGCTCCTACTGCACCATGCCTGCCTGGATGCTGCCATGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTCCTACTGCACCATGCCTGCCTGGATGCTGCCATGTTCC  50

seq1  CACCTTGATGGTAATGGACTGAACCTCTGAATCTGTAAGCCAGCCCCAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTGATGGTAATGGACTGAACCTCTGAATCTGTAAGCCAGCCCCAGT  100

seq1  TAAATGTTGTTTTTTATAAGACTTGCCTTGGTTGTGGTGTCTGTTCACAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTGTTTTTTATAAGACTTGCCTTGGTTGTGGTGTCTGTTCACAG  150

seq1  CAGTAACACCCTAACTAATACAATATCCCAAGTCACATGGAAAAGAAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAACACCCTAACTAATACAATATCCCAAGTCACATGGAAAAGAAGGC  200

seq1  AACAGAGATTCCCCAATCCAACTCAACATTCTAACACTTTGTCCCGAGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGATTCCCCAATCCAACTCAACATTCTAACACTTTGTCCCGAGTA  250

seq1  AGCCCCTCCCATCATCCTGATGCCCAGGAAATCCAGCCCAGCACCAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTCCCATCATCCTGATGCCCAGGAAATCCAGCCCAGCACCAACTG  300

seq1  AGACATACCTATATTCCGAGTCCTGCCTGAGGTCCAGAGTGGTCAACTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATACCTATATTCCGAGTCCTGCCTGAGGTCCAGAGTGGTCAACTTA  350

seq1  CATAGGGATCCTTCTCAATGCTCAGCATCAATCAATCACGACATGTTCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGGGATCCTTCTCAATGCTCAGCATCAATCAATCACGACATGTTCCC  400

seq1  CATGGGATGGATCTACAGTTCAGTGAAAGGAGGACATGCAAATGTGTAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGATGGATCTACAGTTCAGTGAAAGGAGGACATGCAAATGTGTAAG  450

seq1  GAGTGGCTATCAGTAAAACAGCACTTAGCAGATGAGGGAATAAAACTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGGCTATCAGTAAAACAGCACTTAGCAGATGAGGGAATAAAACTGAG  500

seq1  ACTATCTAAGAATCAATGTAAGCCCTAAGTATATTCCTAGAGTCTTCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATCTAAGAATCAATGTAAGCCCTAAGTATATTCCTAGAGTCTTCCCC  550

seq1  TCTCCATAATTCAAATAAAAAACAAATTAAACTCACTGTGAAGTTTCATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCATAATTCAAATAAAAAACAAATTAAACTCACTGTGAAGTTTCATA  600

seq1  TCCACTACGGTGGCCATGTTTTAATTTAAAAAAAACAAATCATCAGCACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTACGGTGGCCATGTTTTAATTTAAAAAAAACAAATCATCAGCACA  650

seq1  TCAAGGGAGCCATGATGAGAATGGCATGCATAGCTTGTTATTATTGACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGCCATGATGAGAATGGCATGCATAGCTTGTTATTATTGACAG  700

seq1  AAACTACCTTTTCACAAAATAATTTTCCTAGATCAGTTCAGATAGGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTACCTTTTCACAAAATAATTTTCCTAGATCAGTTCAGATAGGTAGT  750

seq1  CGTATCTTTTGATATACATGTTTTATTTCATGGATCACACAAGAAAGTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATCTTTTGATATACATGTTTTATTTCATGGATCACACAAGAAAGTAA  800

seq1  TTCATCTGTGTTAGGTACAGCTTTTGCTACCCCACCTAAGCTCCAGGAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTGTGTTAGGTACAGCTTTTGCTACCCCACCTAAGCTCCAGGAAC  850

seq1  AGACCAAACTACCAGCTCCCTGCCCAGAGAATATTGGATCCACAGATGAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAAACTACCAGCTCCCTGCCCAGAGAATATTGGATCCACAGATGAA  900

seq1  AAACACAAATACACACAGTAGTTCAATTTCAGTTTGCCTTATTGGCACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAATACACACAGTAGTTCAATTTCAGTTTGCCTTATTGGCACAA  950

seq1  TGGCTGGGTGCCCCCAATCTACTCAGCTAGCTAGCATGCCCTTCCCCAAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TGGCTGGGTGCCCCCAATCTACTCAGCTAGCTAGCATGCCCTT-CCCAAA  999

seq1  CACCTAGCTCAGCACCCTAAACCTGCACGCAGCCTCAGCTGCTCTGCCAC  1050
      ||||||||||||||| ||||| |||||||||| ||||||||||||  |||
seq2  CACCTAGCTCAGCACTCTAAA-CTGCACGCAGGCTCAGCTGCTCTTGCAC  1048

seq1  CTTCACCCACAGCTCAACGTCCCCAACAGCCCACAGGTAGAAGCGGTCTG  1100
      |||||||| ||||||||||||||||| ||||   || ||||| | |||||
seq2  CTTCACCC-CAGCTCAACGTCCCCAA-AGCCACAAGTTAGAAAC-GTCTG  1095

seq1  TGGCTGCTGCACCCAAGAACTCACCTAGCTA--GTGGGCTTTTTCTCTCC  1148
      ||||||||||||| |||||||||||||||||  |||| ||||||||||||
seq2  TGGCTGCTGCACCTAAGAACTCACCTAGCTAGGGTGGCCTTTTTCTCTCC  1145

seq1  AAAGCCTGTCG-AACTTTCC  1167
      ||||||||| | ||||||||
seq2  AAAGCCTGTTGAAACTTTCC  1165