BAC Information

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BAC

Clone NameB6Ng01-089C01
Chromosome16 (Build37)
Map Location 25,997,471 - 26,103,843
singlet/doubletdoublet
Overlap geneLeprel1
Upstream gene5430420C16Rik, Trp63, LOC100043571
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089C01.bB6Ng01-089C01.g
ACCDH901788DH901789
length9631,142
definitionDH901788|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C01, 5' end.DH901789|Mus musculus domesticus DNA, BAC clone: B6Ng01-089C01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(26,102,883 - 26,103,843)(25,997,471 - 25,998,649)
sequence
gaattcttctcttctctgtgcttcatggaaactctaaggtagacttgcct
tcttctcagggagacacacacacacactgacacacacacactgacacaca
cacaaacacatatgcaccattaccgccatctttggactgtggaatattca
ctagcagggtgaccagctcttgtgtatatgtgtatggtcatagtgccatg
tataagtgaatttatatagtccgaaagccacatgaaactgaattgctctt
gagatctgggacccagtttgcacttaggagtctatcgtagcctagatata
actcagtggaaacaggaggcttcgcagagttaaggaagaacaggcattct
caactagaggataaacacactgtgctcgctttcaggagtaatatccttcc
acacccaggataatgagctcctggaggcaactgatccctgatgctcatgt
gttggagattaagaagagatgagaactgtaaactctgacactttgcactt
cactttcttttttgagggatgaagatcgggatgtccagaagaaagggact
tgctccttgttacctgagtggtgttagtttggcatgttgatggagtgagc
caagggcttatccagagtcagtccgggttctctggctaatggactccagc
ctgtgctatggccagaggccatggtttggctctgggctctgtagaatgct
ggactagtggggattacactgaagccaggtttggacagctccaggggtga
gcaagtccttgttccctgaagtcacaggtatccattcctctctagtactg
ttgtatccaatctgcacagaagcctggagtgtgggagaactgaacagtta
tgtggtgttagccttacagaggcatagtttaccttggtatgcaaagactg
ggtaagaatcatccaacttaaaaaaggctctctctcttcttttctctctc
tctctcttctctc
gaattccaggtaaagcatatatttacatgtatgcccacacatgtgtgcac
gttcacaccatagatacacaaatgtttttactctattgtattcaaaatct
gcattttcagtgctgtaaataaactgttcacaaggttttgtgtggatatt
ttggtcctggtgaaaggaataagacaagactgttcccagtttactctttt
tgacatatccctgttttaaggaaagtcatctgtacccttgtatttagttt
atgggtatccaaaacaaacagcttggtaagatttctgccctctagtttac
atttcaacactggggtttatactttcctgataatgatgagaggccaaata
cagctgtggttttctgaatgactgaattgagtaaactcttcctccactct
gttggtgttttggctttagagagtaaggaataggacattgaaagatataa
actattccaattcagaaagaggttaactttgtaacttcagtttttcacta
atgcaaaatgttgggtttttagtaacatgcgaaattgaaggagtctgtga
tgtgagatcccctggagctagaattataggccaaggggcaagtctagcct
aggttttagaaactaaactcaggtcccctataaaagctgcccatgttatt
aaccatgaggccctctctccaacaatagaaaggacaactttgtaataatc
acagtgctgacgtgacaaaacatttttgtgctgtgtttcatgatgaaaat
aaagaggtgtttttactaagtggaattaaatccactccgtgtcaaaacat
gttggcataagcttaactcacggagaatccttacaaaagattcattttct
tcatattagaaaagtaagcacttattatagtaatctattttgtaggaaaa
cacaaatgtttgattatagtataagtatgaagaagaatcacactgttact
ggatacagaagtatgagtcatccaatatcataaaactatcactgagtatt
tctctaacaagtactattcagtattaaataacaaacaaaacaaatactga
gaaaacatgctccagttccgtggtggaatcagacaagagcaactttatca
gtaactataagccaagcctcattggtggcatccttttaccag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_26102883_26103843
seq2: B6Ng01-089C01.b_44_1006 (reverse)

seq1  GAGAG-AGAGAGAGAGAGAGAGAGAGAGAGAGAGACCTTTTTTTAAGTTG  49
      ||||| ||||||||||||||| |   ||||||||| | ||||||||||||
seq2  GAGAGAAGAGAGAGAGAGAGAAAAGAAGAGAGAGAGCCTTTTTTAAGTTG  50

seq1  GATGATTCTTACCCTGTCTTTGCATACCAAGGTAAACTATGCCTCTGTAG  99
      |||||||||||||| |||||||||||||||||||||||||||||||||| 
seq2  GATGATTCTTACCCAGTCTTTGCATACCAAGGTAAACTATGCCTCTGTAA  100

seq1  GGCTACCACCACATAACTGTTCAGTTCTCCCACACTCCAGGCTTCTGTGC  149
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACACCACATAACTGTTCAGTTCTCCCACACTCCAGGCTTCTGTGC  150

seq1  AGATTGGATACAACAGTACTAGAGAGGAATGGATACCTGTGACTTCAGGG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTGGATACAACAGTACTAGAGAGGAATGGATACCTGTGACTTCAGGG  200

seq1  AACAAGGACTTGCTCACCCCTGGAGCTGTCCAAACCTGGCTTCAGTGTAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGACTTGCTCACCCCTGGAGCTGTCCAAACCTGGCTTCAGTGTAA  250

seq1  TCCCCACTAGTCCAGCATTCTACAGAGCCCAGAGCC-AACCATGGCCTCT  298
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCCCCACTAGTCCAGCATTCTACAGAGCCCAGAGCCAAACCATGGCCTCT  300

seq1  GGCCATAGCACAGGCTGGAGTCCATTAGCCAGAGAACCCGGACTGACTCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCATAGCACAGGCTGGAGTCCATTAGCCAGAGAACCCGGACTGACTCT  350

seq1  GGATAAGCCCTTGGCTCACTCCATCAACATGCCAAACTAACACCACTCAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAAGCCCTTGGCTCACTCCATCAACATGCCAAACTAACACCACTCAG  400

seq1  GTAACAAGGAGCAAGTCCCTTTCTTCTGGACATCCCGATCTTCATCCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAGGAGCAAGTCCCTTTCTTCTGGACATCCCGATCTTCATCCCTC  450

seq1  AAAAAAGAAAGTGAAGTGCAAAGTGTCAGAGTTTACAGTTCTCATCTCTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGTGAAGTGCAAAGTGTCAGAGTTTACAGTTCTCATCTCTT  500

seq1  CTTAATCTCCAACACATGAGCATCAGGGATCAGTTGCCTCCAGGAGCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAATCTCCAACACATGAGCATCAGGGATCAGTTGCCTCCAGGAGCTCA  550

seq1  TTATCCTGGGTGTGGAAGGATATTACTCCTGAAAGCGAGCACAGTGTGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTGGGTGTGGAAGGATATTACTCCTGAAAGCGAGCACAGTGTGTT  600

seq1  TATCCTCTAGTTGAGAATGCCTGTTCTTCCTTAACTCTGCGAAGCCTCCT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTCTAGTTGAGAATGCCTGTTCTTCCTTAACTCTGCGAAGCCTCCT  650

seq1  GTTTCCACTGAGTTATATCTAGGCTACGATAGACTCCTAAGTGCAAACTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCACTGAGTTATATCTAGGCTACGATAGACTCCTAAGTGCAAACTG  700

seq1  GGTCCCAGATCTCAAGAGCAATTCAGTTTCATGTGGCTTTCGGACTATAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCAGATCTCAAGAGCAATTCAGTTTCATGTGGCTTTCGGACTATAT  750

seq1  AAATTCACTTATACATGGCACTATGACCATACACATATACACAAGAGCTG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCACTTATACATGGCACTATGACCATACACATATACACAAGAGCTG  800

seq1  GTCACCCTGCTAGTGAATATTCCACAGTCCAAAGATGGCGGTAATGGTGC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCCTGCTAGTGAATATTCCACAGTCCAAAGATGGCGGTAATGGTGC  850

seq1  ATATGTGTTTGTGTGTGTGTCAGTGTGTGTGTGTCAGTGTGTGTGTGTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTGTTTGTGTGTGTGTCAGTGTGTGTGTGTCAGTGTGTGTGTGTGT  900

seq1  CTCCCTGAGAAGAAGGCAAGTCTACCTTAGAGTTTCCATGAAGCACAGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTGAGAAGAAGGCAAGTCTACCTTAGAGTTTCCATGAAGCACAGAG  950

seq1  AAGAGAAGAATTC  961
      |||||||||||||
seq2  AAGAGAAGAATTC  963

seq1: chr16_25997471_25998649
seq2: B6Ng01-089C01.g_68_1209

seq1  GAATTCCAGGTAAAGCATATATTTACATGTATGCCCACACATGTGTGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGTAAAGCATATATTTACATGTATGCCCACACATGTGTGCAC  50

seq1  GTTCACACCATAGATACACAAATGTTTTTACTCTATTGTATTCAAAATCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACACCATAGATACACAAATGTTTTTACTCTATTGTATTCAAAATCT  100

seq1  GCATTTTCAGTGCTGTAAATAAACTGTTCACAAGGTTTTGTGTGGATATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTTCAGTGCTGTAAATAAACTGTTCACAAGGTTTTGTGTGGATATT  150

seq1  TTGGTCCTGGTGAAAGGAATAAGACAAGACTGTTCCCAGTTTACTCTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCCTGGTGAAAGGAATAAGACAAGACTGTTCCCAGTTTACTCTTTT  200

seq1  TGACATATCCCTGTTTTAAGGAAAGTCATCTGTACCCTTGTATTTAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCCCTGTTTTAAGGAAAGTCATCTGTACCCTTGTATTTAGTTT  250

seq1  ATGGGTATCCAAAACAAACAGCTTGGTAAGATTTCTGCCCTCTAGTTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTATCCAAAACAAACAGCTTGGTAAGATTTCTGCCCTCTAGTTTAC  300

seq1  ATTTCAACACTGGGGTTTATACTTTCCTGATAATGATGAGAGGCCAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAACACTGGGGTTTATACTTTCCTGATAATGATGAGAGGCCAAATA  350

seq1  CAGCTGTGGTTTTCTGAATGACTGAATTGAGTAAACTCTTCCTCCACTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTGGTTTTCTGAATGACTGAATTGAGTAAACTCTTCCTCCACTCT  400

seq1  GTTGGTGTTTTGGCTTTAGAGAGTAAGGAATAGGACATTGAAAGATATAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTGTTTTGGCTTTAGAGAGTAAGGAATAGGACATTGAAAGATATAA  450

seq1  ACTATTCCAATTCAGAAAGAGGTTAACTTTGTAACTTCAGTTTTTCACTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCCAATTCAGAAAGAGGTTAACTTTGTAACTTCAGTTTTTCACTA  500

seq1  ATGCAAAATGTTGGGTTTTTAGTAACATGCGAAATTGAAGGAGTCTGTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATGTTGGGTTTTTAGTAACATGCGAAATTGAAGGAGTCTGTGA  550

seq1  TGTGAGATCCCCTGGAGCTAGAATTATAGGCCAAGGGGCAAGTCTAGCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGATCCCCTGGAGCTAGAATTATAGGCCAAGGGGCAAGTCTAGCCT  600

seq1  AGGTTTTAGAAACTAAACTCAGGTCCCCTATAAAAGCTGCCCATGTTATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTTAGAAACTAAACTCAGGTCCCCTATAAAAGCTGCCCATGTTATT  650

seq1  AACCATGAGGCCCTCTCTCCAACAATAGAAAGGACAACTTTGTAATAATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATGAGGCCCTCTCTCCAACAATAGAAAGGACAACTTTGTAATAATC  700

seq1  ACAGTGCTGACGTGACAAAACATTTTTGTGCTGTGTTTCATGATGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCTGACGTGACAAAACATTTTTGTGCTGTGTTTCATGATGAAAAT  750

seq1  AAAGAGGTGTTTTTAACTAAGTGGAATTAAATCCACTCCGTGTCAAAACA  800
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGAGGTGTTTTT-ACTAAGTGGAATTAAATCCACTCCGTGTCAAAACA  799

seq1  TGTTGGCATAAGCTTAACTCACGGAGAATCCTTACAAAAGATTCATTTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGGCATAAGCTTAACTCACGGAGAATCCTTACAAAAGATTCATTTTC  849

seq1  TTCATATTAGAAAAGTAAGCACTTATATTAGTAATCTATTTTGTAGGAAA  900
      ||||||||||||||||||||||||||  ||||||||||||||||||||||
seq2  TTCATATTAGAAAAGTAAGCACTTATTATAGTAATCTATTTTGTAGGAAA  899

seq1  ACACAAAAATGTTTGA-TATAGTATAAAGTATGAAGAAAGAAATCACACT  949
      ||||  |||||||||| |||||||| ||||||||||||   |||||||||
seq2  ACAC--AAATGTTTGATTATAGTAT-AAGTATGAAGAA--GAATCACACT  944

seq1  GTTACTGGATACAGAAGTATGAAGTCATCCAATATCATAAAACTATTCAA  999
      ||||||||||||||||||||| ||||||||||||||||||||||||   |
seq2  GTTACTGGATACAGAAGTATG-AGTCATCCAATATCATAAAACTAT--CA  991

seq1  CTGAGTATTTCTCTAACAAAGTAACTATTCAGTAATTAAAAATAAAACAA  1049
      ||||||||||||||||| |||| ||||||||||| |   |||||| |   
seq2  CTGAGTATTTCTCTAAC-AAGT-ACTATTCAGTATT---AAATAACA---  1033

seq1  AACAAAAAAACAAATACTGAGGAAAAACATGCTCCCAGGTTCCCAGTGTG  1099
         || |||||||||||||||  ||||||||||||   |||||  ||| |
seq2  ---AACAAAACAAATACTGAG--AAAACATGCTCC--AGTTCC--GTG-G  1073

seq1  TGGAAACAGACAAAGAAGCAACTTTTATCACAGTAAACATAAGGCCAAAG  1149
      ||||| |||||||   |||||| |||||  ||||||  |||||  | |||
seq2  TGGAATCAGACAA--GAGCAAC-TTTAT--CAGTAACTATAAG--CCAAG  1116

seq1  CCTTTAATTGGTTTGCATCCTTTTCACCAG  1179
      ||  | ||||| | |||||||||| |||||
seq2  CC--TCATTGG-TGGCATCCTTTT-ACCAG  1142