BAC Information

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BAC

Clone NameB6Ng01-089F05
Chromosome16 (Build37)
Map Location 33,034,210 - 33,229,617
singlet/doubletdoublet
Overlap geneIqcg, Rpl35a, Lmln, LOC638791, Osbpl11
Upstream genePak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1, Lrch3, EG625660
Downstream geneSnx4, Zfp148, Slc12a8, 4632417D23Rik, Heg1, Muc13, Itgb5, Umps, Kalrn, LOC100043670
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089F05.bB6Ng01-089F05.g
ACCDH901933DH901934
length926826
definitionDH901933|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F05, 5' end.DH901934|Mus musculus domesticus DNA, BAC clone: B6Ng01-089F05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,034,210 - 33,035,133)(33,228,800 - 33,229,617)
sequence
gaattcccagcaaccacaagatggctcacaaccatctgtaatgagatctg
atgctctcttctggtgtgtctgaagacagctacagtacactcatataaaa
tgaataaatctttagaaaaaaaagccaaagacatctgagtttaactctat
tgccttaggcttctgaatagtttaatttccttcctgctggctgtcacatt
tagtgatggtgtgagacacagagtaagatataaaatcctagctggcttta
gatgctaaaaatcatgactggagcataccagcaaataaactgagtccatt
tccgttatcttcacagcaagccatacagcccgcaaggcatggcacaagcc
agccagcgattcatccttactgcagcctgacttcctgattgtccacggag
ccaggcacttccccgtgacccaggtcctcagactgacacagggcatttgt
gggttctcgtggcagactaaactttctacccaaagccgcctctgcctctg
ctgtcagacatggtctgaacacatcatcggatccagaggtgatccagcga
cataagaatcggccagctcatgaggccctgtagctgccgtaagaagtgag
ccaaagcaatggtagcaggagctctcacaaccggacctggcttggggagc
ccgagcttcgagatttagaattagaagcaaggaaacactcctctggcgtg
tcgggttgccactttggttggatggcaagaggaaaacaggaaaagcagtg
gcctgaagtaatggaagtcacactttacggcaaacagtcctgacgtgggg
tgtgagggcgcacgcccctgatgccccgtctccagctcgtaggatgtggg
tgcaggagagggtcattctttggtacttaattatttcagccaggcttgag
ctataggagaccaagctatttatgct
gaattctccgttagtattctggtctccagacaggcctggaacgcatgatc
ctccttgttcagcctccctcgtgctgagattagagatgtgtgtgtacacc
acagctggcttctaacaacaggcccattctgccctcttctttctctagag
cacagagatatgacacataattgattgactgcttgctcatggttctagag
actggacccagggtctcaaacattctaagtgagcactcaccacacaccaa
aactcaatccctgaagtctattttttggttattggttttgtttttgagat
aggtaagacaaaacagaaaaagagtcaaagagttatactatcaaagagca
gaaccagaggcagacatcattaaagcgctcttaccggtgcagtttgccac
catagaacggcttagtatgaaaggtgatgctggctgagtatcccgtcttt
gcacagttgacgctgactttgccccctagttctacccacgggacagtgag
aatggaacgggcatatgcacaaggcagagaaaatgtgtactcctctccgt
gctccaacagacaaaggacacctgagtgtgaaggcaggagggtggttaca
gctcttcaaagacacaatttaaaaaatctccttttcctattttagcacta
gcattatgacttttatattcattaaatctcttgatagcgtgacttttttg
agagcaatttccttgatcacactgaatcggagctactttcactgtgacct
tccctgctcctctgggggctcctgagccctgggggctgaggtggttgctt
ggtgtggagcaccatgctaaggcctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_33034210_33035133
seq2: B6Ng01-089F05.b_45_969

seq1  GAATTCCCAGCAACCACAAGATGGCTCACAACCATCTGTAATGAGATCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCAACCACAAGATGGCTCACAACCATCTGTAATGAGATCTG  50

seq1  ATGCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGTACACTCATATAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTCTTCTGGTGTGTCTGAAGACAGCTACAGTACACTCATATAAAA  100

seq1  TGAATAAATCTTTAGAAAAAAAAGCCAAAGACATCTGAGTTTAACTCTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATCTTTAGAAAAAAAAGCCAAAGACATCTGAGTTTAACTCTAT  150

seq1  TGCCTTAGGCTTCTGAATAGTTTAATTTCCTTCCTGCTGGCTGTCACATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTAGGCTTCTGAATAGTTTAATTTCCTTCCTGCTGGCTGTCACATT  200

seq1  TAGTGATGGTGTGAGACACAGAGTAAGATATAAAATCCTAGCTGGCTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGATGGTGTGAGACACAGAGTAAGATATAAAATCCTAGCTGGCTTTA  250

seq1  GATGCTAAAAATCATGACTGGAGCATACCAGCAAATAAACTGAGTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTAAAAATCATGACTGGAGCATACCAGCAAATAAACTGAGTCCATT  300

seq1  TCCGTTATCTTCACAGCAAGCCATACAGCCCGCAAGGCATGGCACAAGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTTATCTTCACAGCAAGCCATACAGCCCGCAAGGCATGGCACAAGCC  350

seq1  AGCCAGCGATTCATCCTTACTGCAGCCTGACTTCCTGATTGTCCACGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAGCGATTCATCCTTACTGCAGCCTGACTTCCTGATTGTCCACGGAG  400

seq1  CCAGGCACTTCCCCGTGACCCAGGTCCTCAGACTGACACAGGGCATTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCACTTCCCCGTGACCCAGGTCCTCAGACTGACACAGGGCATTTGT  450

seq1  GGGTTCTCGTGGCAGACTAAACTTTCTACCCAAAGCCGCCTCTGCCTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTCTCGTGGCAGACTAAACTTTCTACCCAAAGCCGCCTCTGCCTCTG  500

seq1  CTGTCAGACATGGTCTGAACACATCATCGGATCCAGAGGTGATCCAGCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAGACATGGTCTGAACACATCATCGGATCCAGAGGTGATCCAGCGA  550

seq1  CATAAGAATCGGCCAGCTCATGAGGCCCTGTAGCTGCCGTAAGAAGTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAATCGGCCAGCTCATGAGGCCCTGTAGCTGCCGTAAGAAGTGAG  600

seq1  CCAAAGCAATGGTAGCAGGAGCTCTCACAACCGGACCTGGCTTGGGGAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCAATGGTAGCAGGAGCTCTCACAACCGGACCTGGCTTGGGGAGC  650

seq1  CCGAGCTTCGAGATTTAGAATTAGAAGCAAGGAAACACTCCTCTGGCGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGCTTCGAGATTTAGAATTAGAAGCAAGGAAACACTCCTCTGGCGTG  700

seq1  TCGGGTTGCCACTTTGGTTGGATGGCAAGAGGAAAACAGG-AAAGCAGTG  749
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TCGGGTTGCCACTTTGGTTGGATGGCAAGAGGAAAACAGGAAAAGCAGTG  750

seq1  GCCTGAAGTAATGGAAGTCACAC-TTACGGCAAACAGTCCTGACGTGGGG  798
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GCCTGAAGTAATGGAAGTCACACTTTACGGCAAACAGTCCTGACGTGGGG  800

seq1  TGTGAGGGCGCACGCCCCTGATGCCCCGTCTCCAGCTCGTAGGATGTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGGCGCACGCCCCTGATGCCCCGTCTCCAGCTCGTAGGATGTGGG  850

seq1  TGCAGGAGAGGGTCATCCTTGGCTACTTAGTCAGTTCAAGCCA-GCCTGA  897
      |||||||||||||||| ||| | |||||| | | ||| ||||| || |||
seq2  TGCAGGAGAGGGTCATTCTTTGGTACTTAATTATTTC-AGCCAGGCTTGA  899

seq1  GCTACAGGAGACCAAGCATATTTATGC  924
      |||| |||||||||||| |||||||||
seq2  GCTATAGGAGACCAAGC-TATTTATGC  925

seq1: chr16_33228800_33229617
seq2: B6Ng01-089F05.g_73_898 (reverse)

seq1  CAGGCCTTAGCATGGTGCTCCACACCAGGCAGCCACCTCAG-CCCCAGGG  49
      ||||||||||||||||||||||||||| ||| ||||||||| ||||||||
seq2  CAGGCCTTAGCATGGTGCTCCACACCAAGCAACCACCTCAGCCCCCAGGG  50

seq1  CTCAGGAG-CCCCAGAGGAGCA-GGAAGGTCACAGTGAAAGTAGCTCCGA  97
      |||||||| ||||||||||||| |||||||||||||||||||||||||||
seq2  CTCAGGAGCCCCCAGAGGAGCAGGGAAGGTCACAGTGAAAGTAGCTCCGA  100

seq1  TTCAGTGTGATCA--GGAATTGCTCTCAAATGAAGTCACGCTATCAAGAG  145
      |||||||||||||  | |||||||||||||  ||||||||||||||||||
seq2  TTCAGTGTGATCAAGGAAATTGCTCTCAAA-AAAGTCACGCTATCAAGAG  149

seq1  A-TTAATGAATAT-AAAGTCATAATGCTTAGTGCT-AGATAGGAAAAGGA  192
      | ||||||||||| ||||||||||||| ||||||| | ||||||||||||
seq2  ATTTAATGAATATAAAAGTCATAATGC-TAGTGCTAAAATAGGAAAAGGA  198

seq1  GA-TTTTTAAATTGTGTCTTTGAAGAGCTGTAACCACCCTCCTGCCTTCA  241
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTTAAATTGTGTCTTTGAAGAGCTGTAACCACCCTCCTGCCTTCA  248

seq1  CACTCAGGTGTCCTTTGTCTGTTGGAGCACGGAGAGGAGTACACATTTTC  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAGGTGTCCTTTGTCTGTTGGAGCACGGAGAGGAGTACACATTTTC  298

seq1  TCTGCCTTGTGCATATGCCCGTTCCATTCTCACTGTCCCGTGGGTAGAAC  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTTGTGCATATGCCCGTTCCATTCTCACTGTCCCGTGGGTAGAAC  348

seq1  TAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGC  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGGCAAAGTCAGCGTCAACTGTGCAAAGACGGGATACTCAGCCAGC  398

seq1  ATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCACCGGTAAGA  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCTTTCATACTAAGCCGTTCTATGGTGGCAAACTGCACCGGTAAGA  448

seq1  GCGCTTTAATGATGTCTGCCTCTGGTTCTGCTCTTTGATAGTATAACTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCTTTAATGATGTCTGCCTCTGGTTCTGCTCTTTGATAGTATAACTCT  498

seq1  TTGACTCTTTTTCTGTTTTGTCTTACCTATCTCAAAAACAAAACCAATAA  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTCTTTTTCTGTTTTGTCTTACCTATCTCAAAAACAAAACCAATAA  548

seq1  CCAAAAAATAGACTTCAGGGATTGAGTTTTGGTGTGTGGTGAGTGCTCAC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAAATAGACTTCAGGGATTGAGTTTTGGTGTGTGGTGAGTGCTCAC  598

seq1  TTAGAATGTTTGAGACCCTGGGTCCAGTCTCTAGAACCATGAGCAAGCAG  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATGTTTGAGACCCTGGGTCCAGTCTCTAGAACCATGAGCAAGCAG  648

seq1  TCAATCAATTATGTGTCATATCTCTGTGCTCTAGAGAAAGAAGAGGGCAG  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAATTATGTGTCATATCTCTGTGCTCTAGAGAAAGAAGAGGGCAG  698

seq1  AATGGGCCTGTTGTTAGAAGCCAGCTGTGGTGTACACACACATCTCTAAT  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGCCTGTTGTTAGAAGCCAGCTGTGGTGTACACACACATCTCTAAT  748

seq1  CTCAGCACGAGGGAGGCTGAACAAGGAGGATCATGCGTTCCAGGCCTGTC  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGCACGAGGGAGGCTGAACAAGGAGGATCATGCGTTCCAGGCCTGTC  798

seq1  TGGAGACCAGAATACT-CCGGAGAATTC  818
      ||||||||||||||||  ||||||||||
seq2  TGGAGACCAGAATACTAACGGAGAATTC  826