BAC Information

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BAC

Clone NameB6Ng01-089J08
Chromosome16 (Build37)
Map Location 97,357,230 - 97,486,274
singlet/doubletdoublet
Overlap geneDscam
Upstream geneWrb, 4921526F01Rik, Sh3bgr, B3galt5, Jam4, Itgb2l, Pcp4
Downstream geneBace2, Mx1, ORF9, EG668559, LOC100041436, Mx2, Tmprss2, Ripk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089J08.bB6Ng01-089J08.g
ACCDH902124DH902125
length8751,055
definitionDH902124|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J08, 5' end.DH902125|Mus musculus domesticus DNA, BAC clone: B6Ng01-089J08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,357,230 - 97,358,109)(97,485,212 - 97,486,274)
sequence
gaattcattatcagtgtttctgagtgccgccaccagaagcatttgcacgg
gattgcttttatgcaattgcttggaacacgagcagagaaagagcagaatg
tggaaattccagaatcccaggactttctcaggtttgagttttctcctatc
ttgtcagaaagaaatctcgtgtatgcttttttttttctccagagtcttca
aattttaatatagtaaccatcttattttatttgtttaataatcaggtaag
ttatttactattggtgcatgactaacgggtaaaggatgcaaaccatatat
gaagggtttggtcaataccatttggggaaaaatcaatcattagatgcaag
cactggcatgcatagattcacacaagactgtctacaaatgttgtttagac
tcaccttaaatctgcaagtctatgtaagagtgaggttacccagtgaacta
tcaaccaggaggatatacaggggaaactatgttcagtagaaatcagttct
taaaatagactaatttaagtgatggttagaggattagaagcagctctgtg
cacagagaaagataggcatttcatctaatgagaaggtgctttaaatctaa
tggcatgccattggtgtgaaagaaatgaatctttaaagaatagagaatta
aaaatggccacaggaatacccccaaacaaaaagccaaacagttcagaata
tgtaaatctagtgaaatttgcatatcaaaactcaccccaatccaaattca
aaggcagaggatagctgtcaaactttgaacatttgtgctcaagaaaataa
ctctgataagtaacaaaaggagaaggagaagaagagaatgaggagaagaa
tgggagggaatggaggaataaagaa
gaattcataattatgtactctatagccattgggccagtatcttccaggag
ccatgtgaggtcccctttgtcagaggtccttagagagagaccctagggaa
gcctaggactagatgtcctctttttgtgagacggtcagtaacatgtattt
taaactgagagttcaggaatggggaggtgttcactgggcaaagaacttgc
agaagcacaaagaccttatttctcttcccagaatcatgtacaaactgcac
atgacagcaccagtctctaacccaagtgctctttcagcaggcagggagac
agaggcaggagaatcccaggaacttgaggaccagctagtctagagtacta
gcaataaataacaagaggcttgtctcgtgcaaggtggaaggagaggttca
gtgccttaggtttcctctacccatgaacccctgcatgcccaactccccca
gactgaagaaataaaaagcaaaagttaaaaaagaagcttatgtgccctac
ttttcttgctaaattttattcagctgttgtgacccctctccccatcaaat
cctcctgaaatacaacaaaagaaagatgagatgttctgttctcacatatt
taagctgaaaaacaaacaaacaaactcaaaaaggcttccatgtccaccag
atctctgttgccaaagctgaattttaagccaggagtcagcatctcaatgc
tcactcagaggatccaagtggagtcattaaatcttattacaactccaagt
gcagaaagtaattgcacacttttgtaagtagcttaggattgattaaaatg
cataaaggaaagctgcaaaactctccacaggctgggggatgctgctcccc
agggggaaacgctgcagctgctgttcattctcttagaacctctccagtct
tctggccggcagaagtgagggcgtgcacttccctagtagagcaaggggag
tctggagattgttgtctggctccacagcccagaccctggagattcatttc
atcatgctgatctcatcattggctgcggcatgtccttcccctcgaagctg
cattc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97357230_97358109
seq2: B6Ng01-089J08.b_43_917

seq1  GAATTCATTATCAGTGTTTCTGAGTGCAGCCACCAGAAGCATTTGCACGG  50
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATTCATTATCAGTGTTTCTGAGTGCCGCCACCAGAAGCATTTGCACGG  50

seq1  GATTGCTTTTATGCAATTGCTTGGAACACGAGCAGAGAAAGAGCAGAATG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGCTTTTATGCAATTGCTTGGAACACGAGCAGAGAAAGAGCAGAATG  100

seq1  TGGAAATTCCAGAATCCCAGGACTTTCTCAGGTTTGAGTTTTCTCCTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAATTCCAGAATCCCAGGACTTTCTCAGGTTTGAGTTTTCTCCTATC  150

seq1  TTGTCAGAAAGAAATCTCGTGTATGCTTTTTTTTTTCTCCAGAGTCTTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGAAAGAAATCTCGTGTATGCTTTTTTTTTTCTCCAGAGTCTTCA  200

seq1  AATTTTAATATAGTAACCATCTTATTTTATTTGTTTAATAATCAGGTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTAATATAGTAACCATCTTATTTTATTTGTTTAATAATCAGGTAAG  250

seq1  TTATTTACTATTGGTGCATGACTAACGGGTAAAGGATGCAAACCATATAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTACTATTGGTGCATGACTAACGGGTAAAGGATGCAAACCATATAT  300

seq1  GAAGGGTTTGGTCAATACCATTTGGGGAAAAATCAATCATTAGATGCAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTTTGGTCAATACCATTTGGGGAAAAATCAATCATTAGATGCAAG  350

seq1  CACTGGCATGCATAGATTCACACAAGACTGTCTACAAATGTTGTTTAGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCATGCATAGATTCACACAAGACTGTCTACAAATGTTGTTTAGAC  400

seq1  TCACCTTAAATCTGCAAGTCTATGTAAGAGTGAGGTTACCCAGTGAACTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTTAAATCTGCAAGTCTATGTAAGAGTGAGGTTACCCAGTGAACTA  450

seq1  TCAACCAGGAGGATATACAGGGGAAACTATGTTCAGTAGAAATCAGTTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCAGGAGGATATACAGGGGAAACTATGTTCAGTAGAAATCAGTTCT  500

seq1  TAAAATAGACTAATTTAAGTGATGGTTAGAGGATTAGAAGCAGCTCTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGACTAATTTAAGTGATGGTTAGAGGATTAGAAGCAGCTCTGTG  550

seq1  CACAGAGAAAGATAGGCATTTCATCTAATGAGAAGGTGCTTTAAATCTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAAGATAGGCATTTCATCTAATGAGAAGGTGCTTTAAATCTAA  600

seq1  TGGCATGCCATTGGTGTGAAAGAAATGAATCTTTAAAGAATAGAGAATTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATGCCATTGGTGTGAAAGAAATGAATCTTTAAAGAATAGAGAATTA  650

seq1  AAAATGGCCACAGGAATACCCCCAAACAAAAAGCCAAACAGTTCAGAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGGCCACAGGAATACCCCCAAACAAAAAGCCAAACAGTTCAGAATA  700

seq1  TGTAAATCTAGTGAAATTTGCATATCAAAACTCACCCCAATCCAAATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATCTAGTGAAATTTGCATATCAAAACTCACCCCAATCCAAATTCA  750

seq1  AAGGCAGAGGATAGCTGTCAAACTTTGAACATTTGTGCTCAAGAAAATAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGAGGATAGCTGTCAAACTTTGAACATTTGTGCTCAAGAAAATAA  800

seq1  CTCTGATAAAGTAACAAAAAGGAGAAAGGAGAAGAAGAGAAGGAGGAGAA  850
      ||||||| ||||||| |||||||| |||||||||||||||| ||||||||
seq2  CTCTGAT-AAGTAAC-AAAAGGAG-AAGGAGAAGAAGAGAATGAGGAGAA  847

seq1  GAAATGGGAGGGGAATGGAGGAAGAAAGAA  880
      | ||||||| ||||||||||||| ||||||
seq2  G-AATGGGA-GGGAATGGAGGAATAAAGAA  875

seq1: chr16_97485212_97486274
seq2: B6Ng01-089J08.g_70_1124 (reverse)

seq1  GAATGCAGCCTCTGAGGGGAGGGCCATGCCGCAGCACGATGTGATGAGCT  50
      ||||||||| || ||||||| || ||||||||||| | |  ||||||| |
seq2  GAATGCAGCTTC-GAGGGGAAGGACATGCCGCAGC-CAA--TGATGAGAT  46

seq1  CAGCATGATGAAATGAATTCTCCTGTGTCTGGGCTTGTGGAGCCAGACAA  100
      ||||||||||||||||| ||||| | |||||||| |||||||||||||||
seq2  CAGCATGATGAAATGAA-TCTCCAGGGTCTGGGC-TGTGGAGCCAGACAA  94

seq1  C-ATCTCCAGGCTCCCC-TGCTCTCCTAGGG-AGTGCACGCCCTCACCTT  147
      | |||||||| |||||| |||||| |||||| |||||||||||||||  |
seq2  CAATCTCCAGACTCCCCTTGCTCTACTAGGGAAGTGCACGCCCTCAC--T  142

seq1  CCTGCCCGGCCAGAAGACTGGAGAGGTTTCTAAGAGAATGAACAGCAGCT  197
       ||| ||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTG-CCGGCCAGAAGACTGGAGAGG-TTCTAAGAGAATGAACAGCAGCT  190

seq1  GCAGCGTTTCCCCCTGGGGAGCAGCAT-CCCCAGCCTGTGGAGAGTTTTT  246
      ||||||||||||||||||||||||||| ||||||||||||||||| ||||
seq2  GCAGCGTTTCCCCCTGGGGAGCAGCATCCCCCAGCCTGTGGAGAG-TTTT  239

seq1  GCAGCTTTCCTTTATGCATTTTTAATCAATCCTAAGCTACTTACAAAAGT  296
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCAGCTTTCCTTTATGCA-TTTTAATCAATCCTAAGCTACTTACAAAAGT  288

seq1  GTGCAATTACTTTCTGCACTTGGAGTTGTAATAAGATTTAATGACTCCAC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAATTACTTTCTGCACTTGGAGTTGTAATAAGATTTAATGACTCCAC  338

seq1  TTGGATCCTCTGAGTGAGCATTGAGATGCTGACTCCTGGCTTAAAATTCA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGATCCTCTGAGTGAGCATTGAGATGCTGACTCCTGGCTTAAAATTCA  388

seq1  GCTTTGGCAACAGAGATCTGGTGGACATGGAAGCCTTTTTGAGTTTGTTT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGCAACAGAGATCTGGTGGACATGGAAGCCTTTTTGAGTTTGTTT  438

seq1  GTTTGTTTTTCAGCTTAAATATGTGAGAACAGAACATCTCATCTTTCTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTTTCAGCTTAAATATGTGAGAACAGAACATCTCATCTTTCTTT  488

seq1  TGTTGTATTTCAGGAGGATTTGATGGGGAGAGGGGTCACAACAGCTGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATTTCAGGAGGATTTGATGGGGAGAGGGGTCACAACAGCTGAAT  538

seq1  AAAATTTAGCAAGAAAAGTAGGGCACATAAGCTTCTTTTTTAACTTTTGC  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTTAGCAAGAAAAGTAGGGCACATAAGCTTCTTTTTTAACTTTTGC  588

seq1  TTTTTATTTCTTCAGTCTGGGGGAGTTGGGCATGCAGGGGTTCATGGGTA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATTTCTTCAGTCTGGGGGAGTTGGGCATGCAGGGGTTCATGGGTA  638

seq1  GAGGAAACCTAAGGCACTGAACCTCTCCTTCCACCTTGCACGAGACAAGC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAACCTAAGGCACTGAACCTCTCCTTCCACCTTGCACGAGACAAGC  688

seq1  CTCTTGTTATTTATTGCTAGTACTCTAGACTAGCTGGTCCTCAAGTTCCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTATTTATTGCTAGTACTCTAGACTAGCTGGTCCTCAAGTTCCT  738

seq1  GGGATTCTCCTGCCTCTGTCTCCCTGCCTGCTGAAAGAGCACTTGGGTTA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTCTCCTGCCTCTGTCTCCCTGCCTGCTGAAAGAGCACTTGGGTTA  788

seq1  GAGACTGGTGCTGTCATGTGCAGTTTGTACATGATTCTGGGAAGAGAAAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACTGGTGCTGTCATGTGCAGTTTGTACATGATTCTGGGAAGAGAAAT  838

seq1  AAGGTCTTTGTGCTTCTGCAAGTTCTTTGCCCAGTGAACACCTCCCCATT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTCTTTGTGCTTCTGCAAGTTCTTTGCCCAGTGAACACCTCCCCATT  888

seq1  CCTGAACTCTCAGTTTAAAATACATGTTACTGACCGTCTCACAAAAAGAG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAACTCTCAGTTTAAAATACATGTTACTGACCGTCTCACAAAAAGAG  938

seq1  GACATCTAGTCCTAGGCTTCCCTAGGGTCTCTCTCTAAGGACCTCTGACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATCTAGTCCTAGGCTTCCCTAGGGTCTCTCTCTAAGGACCTCTGACA  988

seq1  AAGGGGACCTCACATGGCTCCTGGAAGATACTGGCCCAATGGCTATAGAG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGACCTCACATGGCTCCTGGAAGATACTGGCCCAATGGCTATAGAG  1038

seq1  TACATAATTATGAATTC  1063
      |||||||||||||||||
seq2  TACATAATTATGAATTC  1055