BAC Information

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BAC

Clone NameB6Ng01-089M20
Chromosome16 (Build37)
Map Location 31,743,661 - 31,884,406
singlet/doubletdoublet
Overlap geneDlg1, Mfi2
Upstream geneLOC100043122, AI480653, Centb2, Ppp1r2, Apod, 1700007E05Rik, Bdh1, Gm536
Downstream geneLOC677155, Pigz, 0610012G03Rik, Ncbp2, Senp5, Pak2, Pigx, 1500031L02Rik, Lrrc33, Bex6, Fbxo45, Wdr53, 2310010M20Rik, Rnf168, LOC666966, Ubxd7, Tm4sf19, 0610012D17Rik, Pcyt1a, Osta, Zdhhc19, LOC385820, Tfrc, Tnk2, ENSMUSG00000075265, LOC672302, Muc4, Muc20, 1700021K19Rik, Fyttd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089M20.bB6Ng01-089M20.g
ACCDH902286DH902287
length1,043334
definitionDH902286|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M20, 5' end.DH902287|Mus musculus domesticus DNA, BAC clone: B6Ng01-089M20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(31,743,661 - 31,744,708)(31,884,076 - 31,884,406)
sequence
gaattcttttgtgtattttgaactttaatttgtagttttgtgcaacatta
tattcctacaatttattatttgatttcacaatctagatttttctgtttta
taagccttcataatttttctctctcttaattggcattgaattattttcag
gttattgctagatcaaaaaaacaggaaagaccatctagacacttgccctc
ttgataaatagtgccaaactacttcacaatatttgtatgattttcacttt
caaaagcaaaatttgaggctttaattggtcataaatacatggtgttgtta
attttctcttgattttgaaatgacatttcattatgacttgaatatacatg
ttcctttttattagtgagctaggctatgcatactcatcaggtaggcttca
tgttttgtgagttacccaggtaggatttttgcttgtttttatatggagta
tgatttggaccagtttgtaagcagatgggttttgtttgtttattctaagt
atttgtttaagggccatttattttctttttttctggaactcaaactgact
tgggatcttgagtccccctttcctggccttctgagtgctgctgggattac
agcccttcttccttcagtttgtttatgtgatgtttacactgactggtttt
cctatgttgaaccatccctccctccatctcgaggatgagggcttcttgtc
atggtgatgatcgttttgatgtgttcttgaattcagcttgtgagtatttt
attatttattgcatccctgttcataagggaacttggttatttttctctcc
atcttttttttttttattttttggttgttgaaatcctgtgtagtttgggg
tattggtgtgattgtgggcctcgttaaaatttgtttggctatatccttct
gttttattttggggatttaatttgaggatattggtgttagcctttccttg
aagtctgatagaattatttgctgaaatcttcttggcctgagaatttttgg
ctagaagaactttaatgactgcttcttatttccttaggggtta
agtagctgtctgggccctgaaaatgtagtttctcattctggagcattcgg
gacacatgcctagacagagaccaccctcagcagcccacaccaggctgatc
tcttattggtcctcttcctactactgtggttgggtcctgcaccacctggc
tgtgttgtctgggacatgggaatgagcaagcctggggtcctgctcggtag
tagccaaccagcagagtagagggagtggcttcgctggctgcagtcaggga
ggctcctgaaggaggtggggctttgcaggttcccaggggcacgggatggg
gcgggggagaggggaaaggagaagggaggggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_31743661_31744708
seq2: B6Ng01-089M20.b_45_1087

seq1  GAATTCTTTTGTGTATTTTGAACTTTAATTTGCAGTTTTGTGCAACATTA  50
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GAATTCTTTTGTGTATTTTGAACTTTAATTTGTAGTTTTGTGCAACATTA  50

seq1  TATTCCTACAATTTATTATTTGATTTCACAATCTAGATTTTTCTGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCTACAATTTATTATTTGATTTCACAATCTAGATTTTTCTGTTTTA  100

seq1  TAAGCCTTCATAATTTTTCTCTCTCTTAATTGGCATTGAATTATTTTCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCTTCATAATTTTTCTCTCTCTTAATTGGCATTGAATTATTTTCAG  150

seq1  GTTATTGCTAGATCAAAAAAACAGGAAAGACCATCTAGACACTTGCCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGCTAGATCAAAAAAACAGGAAAGACCATCTAGACACTTGCCCTC  200

seq1  TTGATAAATAGTGCCAAACTACTTCACAATATTTGTATGATTTTCACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAAATAGTGCCAAACTACTTCACAATATTTGTATGATTTTCACTTT  250

seq1  CAAAAGCAAAATTTGAGGCTTTAATTGGTCATAAATACATGGTGTTGTTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGCAAAATTTGAGGCTTTAATTGGTCATAAATACATGGTGTTGTTA  300

seq1  ATTTTCTCTTGATTTTGAAATGACATTTCATTATGACTTGAATATACATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTCTTGATTTTGAAATGACATTTCATTATGACTTGAATATACATG  350

seq1  TTCCTTTTTATTAGTGAGCTAGGCTATGCATACTCATCAGGTAGGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTATTAGTGAGCTAGGCTATGCATACTCATCAGGTAGGCTTCA  400

seq1  TGTTTTGTGAGTTACCCAGGTAGGATTTTTGCTTGTTTTTATATGGAGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTGAGTTACCCAGGTAGGATTTTTGCTTGTTTTTATATGGAGTA  450

seq1  TGATTTGGACCAGTTTGTAAGCAGATGGGTTTTGTTTGTTTATTCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTGGACCAGTTTGTAAGCAGATGGGTTTTGTTTGTTTATTCTAAGT  500

seq1  ATTTGTTTAAGGGCCATTTATTTTCTTTTTTTCTGGAACTCAAACTGACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTTTAAGGGCCATTTATTTTCTTTTTTTCTGGAACTCAAACTGACT  550

seq1  TGGGATCTTGAGTCCCCCTTTCCTGGCCTTCTGAGTGCTGCTGGGATTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTTGAGTCCCCCTTTCCTGGCCTTCTGAGTGCTGCTGGGATTAC  600

seq1  AGCCCTTCTTCCTTCAGTTTGTTTATGTGATGTTTACACTGACTGGTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCTTCTTCCTTCAGTTTGTTTATGTGATGTTTACACTGACTGGTTTT  650

seq1  CCTATGTTGAACCATCCCTCCCTCCATCTCGAGGATGAGGGCTTCTTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGTTGAACCATCCCTCCCTCCATCTCGAGGATGAGGGCTTCTTGTC  700

seq1  ATGGTGATGATCGTTTTGATGTGTTCTTGAATTCAGCTTGTGAGTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGATGATCGTTTTGATGTGTTCTTGAATTCAGCTTGTGAGTATTTT  750

seq1  ATTATTTATTGCATCCCTGTTCATAAGGGAACTTGGTTATTTTTCTCTCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTGCATCCCTGTTCATAAGGGAACTTGGTTATTTTTCTCTCC  800

seq1  ATCTTTTTTTTTTTTTTTTTTTTTTTGGTTGTTGAATCCTTGTGTAGTTT  850
      |||    |||||||||||| ||||||||||||||||  | ||||||||||
seq2  ATC----TTTTTTTTTTTTATTTTTTGGTTGTTGAAATCCTGTGTAGTTT  846

seq1  -GGGTATTGGTGTGATTGT-GGCCTCG-TAAAATTTGTTTGGCTATATTC  897
       |||||||||||||||||| ||||||| ||||||||||||||||||| ||
seq2  GGGGTATTGGTGTGATTGTGGGCCTCGTTAAAATTTGTTTGGCTATA-TC  895

seq1  CTTCTGTTTCTATTTTGTGGAATTAATTTGAGGAGTATTGGTGTTAGCCC  947
      ||||||||| ||||||| ||| |||||||||||| |||||||||||||| 
seq2  CTTCTGTTT-TATTTTGGGGATTTAATTTGAGGA-TATTGGTGTTAGCCT  943

seq1  TTCCTTGAAAGTCTGATAGAATTATTTGCTGAAATCTTCTGGCCCTGAGA  997
      ||||||| |||||||||||||||||||||||||||||||| | |||||||
seq2  TTCCTTG-AAGTCTGATAGAATTATTTGCTGAAATCTTCTTGGCCTGAGA  992

seq1  TTTTTTTGGCTAGAAGACTTTTAATGACTGCTTC-TATTTCCTTAGGGGT  1046
        |||||||||||||||  ||||||||||||||| |||||||||||||||
seq2  -ATTTTTGGCTAGAAGAACTTTAATGACTGCTTCTTATTTCCTTAGGGGT  1041

seq1  TA  1048
      ||
seq2  TA  1043

seq1: chr16_31884076_31884406
seq2: B6Ng01-089M20.g_78_408 (reverse)

seq1  CCTCCCCTCCCTTCTCCTTTCCCCTCTCCCCCGCCCCATCCCGTGCCCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCTCCCTTCTCCTTTCCCCTCTCCCCCGCCCCATCCCGTGCCCCT  50

seq1  GGGAACCTGCAAAGCCCCACCTCCTTCAGGAGCCTCCCTGACTGCAGCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAACCTGCAAAGCCCCACCTCCTTCAGGAGCCTCCCTGACTGCAGCCA  100

seq1  GCGAAGCCACTCCCTCTACTCTGCTGGTTGGCTACTACCGAGCAGGACCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAAGCCACTCCCTCTACTCTGCTGGTTGGCTACTACCGAGCAGGACCC  150

seq1  CAGGCTTGCTCATTCCCATGTCCCAGACAACACAGCCAGGTGGTGCAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTTGCTCATTCCCATGTCCCAGACAACACAGCCAGGTGGTGCAGGA  200

seq1  CCCAACCACAGTAGTAGGAAGAGGACCAATAAGAGATCAGCCTGGTGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACCACAGTAGTAGGAAGAGGACCAATAAGAGATCAGCCTGGTGTGG  250

seq1  GCTGCTGAGGGTGGTCTCTGTCTAGGCATGTGTCCCGAATGCTCCAGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCTGAGGGTGGTCTCTGTCTAGGCATGTGTCCCGAATGCTCCAGAAT  300

seq1  GAGAAACTACATTTTCAGGGCCCAGACAGCT  331
      |||||||||||||||||||||||||||||||
seq2  GAGAAACTACATTTTCAGGGCCCAGACAGCT  331