BAC Information

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BAC

Clone NameB6Ng01-089N18
Chromosome16 (Build37)
Map Location 88,548,927 - 88,731,902
singlet/doubletdoublet
Overlap geneCldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1
Upstream geneLOC435486, ORF63, Bach1, LOC100039901, Grik1, EG622373, Cldn17
Downstream geneKrtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089N18.bB6Ng01-089N18.g
ACCDH902325DH902326
length1,167784
definitionDH902325|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N18, 5' end.DH902326|Mus musculus domesticus DNA, BAC clone: B6Ng01-089N18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,548,927 - 88,550,098)(88,731,117 - 88,731,902)
sequence
gaattccacattggttttctctctgctcttgactggggaggccatgtttg
gagttcctggttttcctttcctacaataacagaaggtaacatagaatgtg
aaatgcaataaacccttcctcttttaagctgctctttgtcagcttattct
atcacagcaaacaaagttaagagaagagacagatacatccaaaaaccctt
cattaaaataccagctcaaaattaatgtcaaactgggttagtctctcatg
attcattttggtcaaaatgtcgcaaagtaactaactgtcttccagctgga
gttggtctggtgctgctatatattcaaacgtcaaattccataccccaaaa
tgtggttgcctcaagatgagacagcaaattgtcttgaataccagattttg
tttcacaaaccttactccccaaattaactggacaatcaaaggctgaagcc
tcagactgggcagtagagataggtgggacttctaaggagggcgaaaggaa
cccttgaaaaaggaaagggggtggcttttctacaggagacaagaaaggag
atggacaggactatgggcctggaaggtacagcttgccacatggctggatg
gagctaggcagttggattaacttcgatgagctagttgaaagtctactact
cagctaaggtcaaacctttgacatattaaaaagtctctgtgtggttattt
gaggtactagttggttaaggattaactaccatggagttaatttccagcat
taaataatatataaaaatattaataatcatttttatatcttccaatcaca
tattttcattccatatctgaaaaaatatgttttaatgcttttttccttat
cttagttcatttgatttaaagacgttgctttctaatgtcatcatattgtc
cataattgtattgtcttcctcgggagttcagttgtttccattacacatgg
tcctgcttggatttccagcgtaagtcatttgcattctatatactattgtc
tttaagatatagacatacattcattttctgtatttatgtttttgcatata
gaatattttgttagtaaataaagagaatagaaatatttggaatccaattt
ttatttttattgacccattttctttaaccaggccttcaatgtgttggtga
aaatataaatgtcaatt
gaattccctcctaatgaacagaattaatttaaacccaagaataaatgtat
aatatacaagcatatgtgtatacatacagaaataatttaaatgaagttgt
agtaatagtgttctttcccagagccatctgccaacaaactctccagtcca
agcatggtaaatcttcttttgagttgttaaagaagtacacgagaacactc
ctgaaaaataggctactatcattacttttgtgtgccctcctacattttgt
agggtcctcctaaatttcatagggtgaccttgtgttttcaattgttttgg
ggagccctcagttcctggctagatgaatatgtaaatgccacttcttcacc
tgcctttaagagaaaagaaacaggtcctgaagacaaagaccttccccagc
ttgctagctgagtaatgaacgctgcttttgtgcatagcagttaaaagcac
caactgctcttccaaaggtcctgagttcaattcccagcaaccaaatggtg
gctcacaaccatctgcaattggggtctgatgccctcttctggtgagtctc
aagagagcaatggtgaatacataagataaataaaataaaataaaataaaa
taaaataggaaaaagaaagaaaaaagaaaaaaaggaaaggaaaggaaaga
gagagggggagagagagagagagagagagagagagagagagagagagaga
ctagggagggagctgggacagaactttagggaagttgagatgcagcagaa
ggagggagacactggaggcagctatgagagactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88548927_88550098
seq2: B6Ng01-089N18.b_50_1216

seq1  GAATTCCACATTGGTTTTCTCTCTGCTCTTGACTGGGGAGGCCATGTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACATTGGTTTTCTCTCTGCTCTTGACTGGGGAGGCCATGTTTG  50

seq1  GAGTTCCTGGTTTTCCTTTCCTACAATAACAGAAGGTAACATAGAATGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCCTGGTTTTCCTTTCCTACAATAACAGAAGGTAACATAGAATGTG  100

seq1  AAATGCAATAAACCCTTCCTCTTTTAAGCTGCTCTTTGTCAGCTTATTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAATAAACCCTTCCTCTTTTAAGCTGCTCTTTGTCAGCTTATTCT  150

seq1  ATCACAGCAAACAAAGTTAAGAGAAGAGACAGATACATCCAAAAACCCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGCAAACAAAGTTAAGAGAAGAGACAGATACATCCAAAAACCCTT  200

seq1  CATTAAAATACCAGCTCAAAATTAATGTCAAACTGGGTTAGTCTCTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAAATACCAGCTCAAAATTAATGTCAAACTGGGTTAGTCTCTCATG  250

seq1  ATTCATTTTGGTCAAAATGTCGCAAAGTAACTAACTGTCTTCCAGCTGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATTTTGGTCAAAATGTCGCAAAGTAACTAACTGTCTTCCAGCTGGA  300

seq1  GTTGGTCTGGTGCTGCTATATATTCAAACGTCAAATTCCATACCCCAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGTCTGGTGCTGCTATATATTCAAACGTCAAATTCCATACCCCAAAA  350

seq1  TGTGGTTGCCTCAAGATGAGACAGCAAATTGTCTTGAATACCAGATTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTTGCCTCAAGATGAGACAGCAAATTGTCTTGAATACCAGATTTTG  400

seq1  TTTCACAAACCTTACTCCCCAAATTAACTGGACAATCAAAGGCTGAAGCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACAAACCTTACTCCCCAAATTAACTGGACAATCAAAGGCTGAAGCC  450

seq1  TCAGACTGGGCAGTAGAGATAGGTGGGACTTCTAAGGAGGGCGAAAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACTGGGCAGTAGAGATAGGTGGGACTTCTAAGGAGGGCGAAAGGAA  500

seq1  CCCTTGAAAAAGGAAAGGGGGTGGCTTTTCTACAGGAGACAAGAAAGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAAAAGGAAAGGGGGTGGCTTTTCTACAGGAGACAAGAAAGGAG  550

seq1  ATGGACAGGACTATGGGCCTGGAAGGTACAGCTTGCCACATGGCTGGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACAGGACTATGGGCCTGGAAGGTACAGCTTGCCACATGGCTGGATG  600

seq1  GAGCTAGGCAGTTGGATTAACTTCGATGAGCTAGTTGAAAGTCTACTACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTAGGCAGTTGGATTAACTTCGATGAGCTAGTTGAAAGTCTACTACT  650

seq1  CAGCTAAGGTCAAACCTTTGACATATTAAAAAGTCTCTGTGTGGTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTAAGGTCAAACCTTTGACATATTAAAAAGTCTCTGTGTGGTTATTT  700

seq1  GAGGTACTAGTTGGTTAAGGATTAACTACCATGGAGTTAATTTCCAGCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTACTAGTTGGTTAAGGATTAACTACCATGGAGTTAATTTCCAGCAT  750

seq1  TAAATAATATATAAAAATATTAATAATCATTTTTATATCTTCCAATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATATATAAAAATATTAATAATCATTTTTATATCTTCCAATCACA  800

seq1  TATTTTCATTCCATATCTGAAAAAATATGTTTTAATGCTTTTTTCCTTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCATTCCATATCTGAAAAAATATGTTTTAATGCTTTTTTCCTTAT  850

seq1  CTTAGTTCATTTGATTTAAAGACGTTGCTTTCTAATGTCATCATATTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGTTCATTTGATTTAAAGACGTTGCTTTCTAATGTCATCATATTGTC  900

seq1  CATAATTGTATTGTCTTCCTCGGGAGTTCAGTTGTTTCCATTACCACATG  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CATAATTGTATTGTCTTCCTCGGGAGTTCAGTTGTTTCCATTA-CACATG  949

seq1  GTCCTGCTTGGAATTTCCAGCGTAAGTCATTTGCATTCTATATACTATTG  1000
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGCTTGG-ATTTCCAGCGTAAGTCATTTGCATTCTATATACTATTG  998

seq1  TCTTTAAGATATAGACATACATTCA-TGTCTGTA-TTATGTTTTGGCAAT  1048
      ||||||||||||||||||||||||| | |||||| ||||||||| || ||
seq2  TCTTTAAGATATAGACATACATTCATTTTCTGTATTTATGTTTTTGC-AT  1047

seq1  ATAGAATATTTGTTTAGTAAAATATAAGAATAGAAATAATTTGAAAATCA  1098
      |||||||||||  ||||||||  |  ||||||||||| ||||| ||  ||
seq2  ATAGAATATTTTGTTAGTAAATAAAGAGAATAGAAAT-ATTTGGAATCCA  1096

seq1  CATTTTATATTTA-TGACCCATTTTCTTTAACACAGGCTTTTAAATGTGT  1147
        |||||| |||| |||||||||||||||||| |||||  || |||||||
seq2  ATTTTTATTTTTATTGACCCATTTTCTTTAAC-CAGGC-CTTCAATGTGT  1144

seq1  GTGAGAGATATAAAAATGGTCAATT  1172
        | || | ||| |||| |||||||
seq2  TGGTGA-AAATATAAAT-GTCAATT  1167

seq1: chr16_88731117_88731902
seq2: B6Ng01-089N18.g_68_851 (reverse)

seq1  CAGTCTCTCTTCTGCTGCCTCCAGTGTCTCCCTCCCTCTGCCTGCATCTC  50
      ||||||||| |  |||||||||||||||||||||| |||| |||||||||
seq2  CAGTCTCTCAT-AGCTGCCTCCAGTGTCTCCCTCCTTCTG-CTGCATCTC  48

seq1  AACTTCCCTAAAGTTCTGTCCCAGCT-CCTCCCTAGTTCTCTCTCTCTCT  99
      |||||||||||||||||||||||||| ||||||||| |||||||||||||
seq2  AACTTCCCTAAAGTTCTGTCCCAGCTCCCTCCCTAG-TCTCTCTCTCTCT  97

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTTTCCTTTCCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTCTCTCTTTCCTTTCCT  147

seq1  TTCCTTTTTTTCTTTTTTCTTTCTTTTTCCTATTTTATTTTATTTTATTT  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTTTTCTTTTTTCTTTCTTTTTCCTATTTTATTTTATTTTATTT  197

seq1  TATTTTATTTATCTTATGTATTCACCATTGCTCTCTTGAGACTCACCAGA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATTTATCTTATGTATTCACCATTGCTCTCTTGAGACTCACCAGA  247

seq1  AGAGGGCATCAGACCCCAATTGCAGATGGTTGTGAGCCACCATTTGGTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGGCATCAGACCCCAATTGCAGATGGTTGTGAGCCACCATTTGGTTG  297

seq1  CTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGTTGGTGCTTTTAACTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAATTGAACTCAGGACCTTTGGAAGAGCAGTTGGTGCTTTTAACTG  347

seq1  CTATGCACAAAAGCAGCGTTCATTACTCAGCTAGCAAGCTGGGGAAGGTC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGCACAAAAGCAGCGTTCATTACTCAGCTAGCAAGCTGGGGAAGGTC  397

seq1  TTTGTCTTCAGGACCTGTTTCTTTTCTCTTAAAGGCAGGTGAAGAAGTGG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTTCAGGACCTGTTTCTTTTCTCTTAAAGGCAGGTGAAGAAGTGG  447

seq1  CATTTACATATTCATCTAGCCAGGAACTGAGGGCTCCCCAAAACAATTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACATATTCATCTAGCCAGGAACTGAGGGCTCCCCAAAACAATTGA  497

seq1  AAACACAAGGTCACCCTATGAAATTTAGGAGGACCCTACAAAATGTAGGA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACACAAGGTCACCCTATGAAATTTAGGAGGACCCTACAAAATGTAGGA  547

seq1  GGGCACACAAAAGTAATGATAGTAGCCTATTTTTCAGGAGTGTTCTCGTG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACACAAAAGTAATGATAGTAGCCTATTTTTCAGGAGTGTTCTCGTG  597

seq1  TACTTCTTTAACAACTCAAAAGAAGATTTACCATGCTTGGACTGGAGAGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTTTAACAACTCAAAAGAAGATTTACCATGCTTGGACTGGAGAGT  647

seq1  TTGTTGGCAGATGGCTCTGGGAAAGAACACTATTACTACAACTTCATTTA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGCAGATGGCTCTGGGAAAGAACACTATTACTACAACTTCATTTA  697

seq1  AATTATTTCTGTATGTATACACATATGCTTGTATATTATACATTTATTCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATTTCTGTATGTATACACATATGCTTGTATATTATACATTTATTCT  747

seq1  TGGGTTTAAATTAATTCTGTTCATTAGGAGGGAATTC  786
      |||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTAAATTAATTCTGTTCATTAGGAGGGAATTC  784