BAC Information

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BAC

Clone NameB6Ng01-089P04
Chromosome16 (Build37)
Map Location 80,367,178 - 80,500,082
singlet/doubletdoublet
Overlap genenone
Upstream geneEG383172, 1700066C05Rik
Downstream geneLOC621365, LOC100039724, Ncam2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-089P04.bB6Ng01-089P04.g
ACCDH902388DH902389
length1,2521,171
definitionDH902388|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P04, 5' end.DH902389|Mus musculus domesticus DNA, BAC clone: B6Ng01-089P04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,367,178 - 80,368,421)(80,498,930 - 80,500,082)
sequence
gaattccaaaactttcacattagtttaacatattcctcctttcccagcga
taaacctataatttccccagaatctcactagaaagtccctttatagtaaa
aagatacatccccacctgcttgtgtaacaccagtgattgctcgttttatt
tttaccaggttgtaatttgctccaaggcacctctgtaaatgtcttataat
cttacctatagaacaaagtggaaaagagaggagtggaaatgggtcttaag
gatacttatgcctctcaacgagcctgtatgtatacctgagtatttattat
tctttctctgtgtgcctcttttgctcttaatacatatattgaataatatc
ctggagcggcgatataactcagtagttgagttagagtgctttctaatcta
tgaagagaaccagagttctgatctaagtaaaacgcccagaattgcacaga
aattgcagctccacctacaaactatctgaccctctcttttggcctctgca
ggtacctacacagacaaaatgatatactcattcacacagacacaaacaca
cacacacacacactcacacaagtgtgtgcacacatacaaataaaaataaa
tggctgtcaaactttgccatttaataatctataactctccatcgagaagc
cctcactcctgatctgccaggtatctcatttttttgccttaaatgccccc
cccccccctttatggttaacacgccttattttgcttcttccttatgtatt
ttcaatattttattgcattaaaaccaaatatcaggcttatcggaattgac
ttgagttagattgcagagctgggtttctgtccctgctgaactcaacaagc
ttcccatgagcagaaacaggttttcgcaaaatagctcatccttccttgtc
ccgaatgacaaaaagagcagagtagaaaagatgaggcaacaaaactacag
atgtcacattaagcctcggaaaggataataggtcagggtaactgtaaatt
agaaaacttattcacagcatttaggcactttctcagttcacgtaagactt
taacatttctttaaattcttgtagggtttcacagtaggaatttcttggat
tcctttgggcctctgctataaaggactccctactgaaatttgaatggaaa
atctatatgaagtcatctctttctgccctttcctcagtcaggaaagagtt
gtggctcttgtgcacgcctagggagaaattgactcatgtctacttgtgcc
ct
gaattcaaatgatgacgtaagtcaaagaaaactagaaactgccacaattt
gcaacagaaaaaggatggttatttccattgaatatttacaaagatctctt
tacagaaagttcagagaatgtgatgtgtgtatacacactccacaatcaca
gaaatgaatgtcacttatttgaaaaattaaatcctatattaaaccacaaa
ttaataatttgacacagaacttagaagaaaatagtagatgggctctgaaa
tactatggtaagagattggtgggtagatgaggaggaaaagagagtaaaca
caaagaacattgtatattactaaaatattaaatacaaactactttcaagt
atgtgtacaaagtgcattctacctaattaataatacaattaatagaacta
taataggattaaaacataatcataaaatataaggaaaccaaatgattaca
cataaaataatatccattatgtttttcatttttgaattggagattttgat
tcttacttgtcaaattgtctaaggaaagattttatagctgtatttgttat
cattgagattaaacatccatgaccttcagcatttagagatcatgaattta
taacactatcatagtgtcaatacagtaattgtgtttctagtggataatgg
tactggaaagtatatgttttatctagataagataattcactacctatatc
tccctcaattaagttaagctgaatgagttgagaatagagataaatacatt
gtacatatgtttatattatgttttcagagtcaaattagcagtccattatg
tgtttgttcaaaataattaatgaagtagtacttaattatgatctataatc
cagccaataaatatgttgattctagtagtgatttgttaattatttttatt
gtactctgaattaggaagatatatatatatacacatacaccatgtatatt
tataatgtatatataccatggcattatgggtaactttgattcatcaaaaa
ccaccaaacctagttatagggcctcaagaatagttgtcacagaaaattgt
gttcctctgctctttacgcaccttttttcttggggttagtacaactacct
aggccttatccaaacctttcttttacacggatgtgaaaaatataaacgga
aaaatcacaaaaggtacacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_80367178_80368421
seq2: B6Ng01-089P04.b_45_1296

seq1  GAATTCCAAAACTTTCACATTAGTTTAACATATTCCTCCTTTCCCAGCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAAACTTTCACATTAGTTTAACATATTCCTCCTTTCCCAGCGA  50

seq1  TAAACCTATAATTTCCCCAGAATCTCACTAGAAAGTCCCTTTATAGTAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACCTATAATTTCCCCAGAATCTCACTAGAAAGTCCCTTTATAGTAAA  100

seq1  AAGATACATCCCCACCTGCTTGTGTAACACCAGTGATTGCTCGTTTTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATACATCCCCACCTGCTTGTGTAACACCAGTGATTGCTCGTTTTATT  150

seq1  TTTACCAGGTTGTAATTTGCTCCAAGGCACCTCTGTAAATGTCTTATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACCAGGTTGTAATTTGCTCCAAGGCACCTCTGTAAATGTCTTATAAT  200

seq1  CTTACCTATAGAACAAAGTGGAAAAGAGAGGAGTGGAAATGGGTCTTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTATAGAACAAAGTGGAAAAGAGAGGAGTGGAAATGGGTCTTAAG  250

seq1  GATACTTATGCCTCTCAACGAGCCTGTATGTATACCTGAGTATTTATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACTTATGCCTCTCAACGAGCCTGTATGTATACCTGAGTATTTATTAT  300

seq1  TCTTTCTCTGTGTGCCTCTTTTGCTCTTAATACATATATTGAATAATATC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTGTGTGCCTCTTTTGCTCTTAATACATATATTGAATAATATC  350

seq1  CTGGAGCGGCGATATAACTCAGTAGTTGAGTTAGAGTGCTTTCTAATCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAGCGGCGATATAACTCAGTAGTTGAGTTAGAGTGCTTTCTAATCTA  400

seq1  TGAAGAGAACCAGAGTTCTGATCTAAGTAAAACGCCCAGAATTGCACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGAGAACCAGAGTTCTGATCTAAGTAAAACGCCCAGAATTGCACAGA  450

seq1  AATTGCAGCTCCACCTACAAACTATCTGACCCTCTCTTTTGGCCTCTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCAGCTCCACCTACAAACTATCTGACCCTCTCTTTTGGCCTCTGCA  500

seq1  GGTACCTACACAGACAAAATGATATACTCATTCACACAGACACAAACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTACACAGACAAAATGATATACTCATTCACACAGACACAAACACA  550

seq1  CACACACACACACTCACACAAGTGTGTGCACACATACAAATAAAAATAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACTCACACAAGTGTGTGCACACATACAAATAAAAATAAA  600

seq1  TGGCTGTCAAACTTTGCCATTTAATAATCTATAACTCTCCATCGAGAAGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTCAAACTTTGCCATTTAATAATCTATAACTCTCCATCGAGAAGC  650

seq1  CCTCACTCCTGATCTGCCAGGTATCTCATTTTTTTGCCTTAAATGCCCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACTCCTGATCTGCCAGGTATCTCATTTTTTTGCCTTAAATGCCCCC  700

seq1  CCCCCCCCTTTATGGTTAACACGCCTTATTTTGCTTCTTCCTTATGTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCCCCTTTATGGTTAACACGCCTTATTTTGCTTCTTCCTTATGTATT  750

seq1  TTCAATATTTTATTGCATTAAAACCAAATATCAGGCTTATCGGAATTGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATATTTTATTGCATTAAAACCAAATATCAGGCTTATCGGAATTGAC  800

seq1  TTGAGTTAGATTGCAGAGCTGGGTTTCTGTCCCTGCTGAACTCAACAAGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTTAGATTGCAGAGCTGGGTTTCTGTCCCTGCTGAACTCAACAAGC  850

seq1  TTCCCATGAGCAGAAACAGGTTTTCGCAAAATAGCTCATCCTTCCTTGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCATGAGCAGAAACAGGTTTTCGCAAAATAGCTCATCCTTCCTTGTC  900

seq1  ACGAATGACAAAAAAGAGCAGAGTAGAAAAGATGAAGCAACAAAACTACA  950
       |||||||| ||||||||||||||||||||||||| ||||||||||||||
seq2  CCGAATGAC-AAAAAGAGCAGAGTAGAAAAGATGAGGCAACAAAACTACA  949

seq1  GATGTCACATTAAGCCTCGGAAAGGATAATAGGTCAGTGATACTGTAAAT  1000
      ||||||||||||||||||||||||||||||||||||| |  |||||||||
seq2  GATGTCACATTAAGCCTCGGAAAGGATAATAGGTCAGGGTAACTGTAAAT  999

seq1  TCAGAGACTTTATCACAGCATTTA-GCAC-TTCTCAGTCCACGT-AGAC-  1046
      |   | ||||  |||||||||||| |||| |||||||| ||||| |||| 
seq2  TAGAAAACTTATTCACAGCATTTAGGCACTTTCTCAGTTCACGTAAGACT  1049

seq1  TTAACA-TTCTTT-AATTC-TGTA-GGTTTCACAGGTAGGAAATATCTTG  1092
      |||||| |||||| ||||| |||| ||||||||| ||||| ||| |||||
seq2  TTAACATTTCTTTAAATTCTTGTAGGGTTTCACA-GTAGG-AATTTCTTG  1097

seq1  GATTCCTTTTGG-CTCTGCTATAGAGGCACCCCTACCTGATTTTTGATTG  1141
      ||||||||| || |||||||||| |||   ||||| ||||  ||||| ||
seq2  GATTCCTTTGGGCCTCTGCTATAAAGGACTCCCTA-CTGAAATTTGAATG  1146

seq1  GAAAATCTATATGAAGTCCATCTCTTCCTGCC--TTCCTCAGTCAGGAAA  1189
      ||||||||||||||||| |||||||| |||||  ||||||||||||||||
seq2  GAAAATCTATATGAAGT-CATCTCTTTCTGCCCTTTCCTCAGTCAGGAAA  1195

seq1  GAAGTTTGCTGCTCTTG-CAACGTC-AGGGAGAAATAGTCATATG-CTAC  1236
      ||   |||  |||||||   ||| | |||||||||| | |  ||| ||||
seq2  GA--GTTGTGGCTCTTGTGCACGCCTAGGGAGAAATTGACTCATGTCTAC  1243

seq1  TTGT-CCCT  1244
      |||| ||||
seq2  TTGTGCCCT  1252

seq1: chr16_80498930_80500082
seq2: B6Ng01-089P04.g_70_1240 (reverse)

seq1  TAGTGTACCTATTGTGA-TTTTCTGTTATTATTTTTCACATCC-TGTAAA  48
      |||||||||| |||||| ||||| |||  |||||||||||||| ||||||
seq2  TAGTGTACCTTTTGTGATTTTTCCGTTTATATTTTTCACATCCGTGTAAA  50

seq1  GAGAAGATTTTGATAAGG-CTAGGTAGTTGTACTTA-CCCAAG--AAAAG  94
         ||| ||| ||||||| ||||||||||||||| | ||||||  |||||
seq2  AGAAAGGTTTGGATAAGGCCTAGGTAGTTGTACTAACCCCAAGAAAAAAG  100

seq1  GTGCGTAAGGAGCAG-GGGACAC-ATTTTCTGTGAC-ACTATTCTT--GG  139
      |||||||| |||||| || |||| |||||||||||| |||||||||  ||
seq2  GTGCGTAAAGAGCAGAGGAACACAATTTTCTGTGACAACTATTCTTGAGG  150

seq1  GCCTATAACTAGGTTT-GTGG-TTTTGATGAATCAAAGTTACCCAT-ATG  186
       ||||||||||||||| |||| |||||||||||||||||||||||| |||
seq2  CCCTATAACTAGGTTTGGTGGTTTTTGATGAATCAAAGTTACCCATAATG  200

seq1  -CAT-GTATATATACATATAAAATATACAT-GTGTATGTGTATATATATA  233
       ||| ||||||||||||   |||||||||| |||||||||||||||||||
seq2  CCATGGTATATATACATTATAAATATACATGGTGTATGTGTATATATATA  250

seq1  TATCTTCCTAATTCAGAGTACAATAAAAATAATTAACAATTCACTACTAG  283
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  TATCTTCCTAATTCAGAGTACAATAAAAATAATTAACAAATCACTACTAG  300

seq1  AATCAACATATTTATTGGCTGGATTATAGATCATAATTAAGTACTACTTC  333
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACATATTTATTGGCTGGATTATAGATCATAATTAAGTACTACTTC  350

seq1  ATTAATTATTTTGAACAAACACATAATGGACTGCTAATTTGACTCTGAAA  383
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAATTATTTTGAACAAACACATAATGGACTGCTAATTTGACTCTGAAA  400

seq1  ACATAATATAAACATATGTACAATGTATTTATCTCTATTCTCAACTCATT  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAATATAAACATATGTACAATGTATTTATCTCTATTCTCAACTCATT  450

seq1  CAGCTTAACTTAATTGAGGGAGATATAGGTAGTGAATTATCTTATCTAGA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTAACTTAATTGAGGGAGATATAGGTAGTGAATTATCTTATCTAGA  500

seq1  T-AAACATATACTTTCCAGTACCATTATCCACTAGAAACACAATTACTGT  532
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACATATACTTTCCAGTACCATTATCCACTAGAAACACAATTACTGT  550

seq1  ATTGACACTATGATAGTGTTATAAATTCATGATCTCTAAATGCTGAAGGT  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGACACTATGATAGTGTTATAAATTCATGATCTCTAAATGCTGAAGGT  600

seq1  CATGGATGTTTAATCTCAATGATAACAAATACAGCTATAAAATCTTTCCT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGATGTTTAATCTCAATGATAACAAATACAGCTATAAAATCTTTCCT  650

seq1  TAGACAATTTGACAAGTAAGAATCAAAATCTCCAATTCAAAAATGAAAAA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAATTTGACAAGTAAGAATCAAAATCTCCAATTCAAAAATGAAAAA  700

seq1  CATAATGGATATTATTTTATGTGTAATCATTTGGTTTCCTTATATTTTAT  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGGATATTATTTTATGTGTAATCATTTGGTTTCCTTATATTTTAT  750

seq1  GATTATGTTTTAATCCTATTATAGTTCTATTAATTGTATTATTAATTAGG  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATGTTTTAATCCTATTATAGTTCTATTAATTGTATTATTAATTAGG  800

seq1  TAGAATGCACTTTGTACACATACTTGAAAGTAGTTTGTATTTAATATTTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGCACTTTGTACACATACTTGAAAGTAGTTTGTATTTAATATTTT  850

seq1  AGTAATATACAATGTTCTTTGTGTTTACTCTCTTTTCCTCCTCATCTACC  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATATACAATGTTCTTTGTGTTTACTCTCTTTTCCTCCTCATCTACC  900

seq1  CACCAATCTCTTACCATAGTATTTCAGAGCCCATCTACTATTTTCTTCTA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCAATCTCTTACCATAGTATTTCAGAGCCCATCTACTATTTTCTTCTA  950

seq1  AGTTCTGTGTCAAATTATTAATTTGTGGTTTAATATAGGATTTAATTTTT  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTGTGTCAAATTATTAATTTGTGGTTTAATATAGGATTTAATTTTT  1000

seq1  CAAATAAGTGACATTCATTTCTGTGATTGTGGAGTGTGTATACACACATC  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAGTGACATTCATTTCTGTGATTGTGGAGTGTGTATACACACATC  1050

seq1  ACATTCTCTGAACTTTCTGTAAAGAGATCTTTGTAAATATTCAATGGAAA  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTCTCTGAACTTTCTGTAAAGAGATCTTTGTAAATATTCAATGGAAA  1100

seq1  TAACCATCCTTTTTCTGTTGCAAATTGTGGCAGTTTCTAGTTTTCTTTGA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACCATCCTTTTTCTGTTGCAAATTGTGGCAGTTTCTAGTTTTCTTTGA  1150

seq1  CTTACGTCATCATTTGAATTC  1153
      |||||||||||||||||||||
seq2  CTTACGTCATCATTTGAATTC  1171