BAC Information

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BAC

Clone NameB6Ng01-090H06
Chromosome16 (Build37)
Map Location 73,652,539 - 73,861,362
singlet/doubletdoublet
Overlap genenone
Upstream geneRobo1, LOC100039310, LOC100039318, LOC100039326
Downstream geneRobo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090H06.bB6Ng01-090H06.g
ACCDH902748DH902749
length1,111938
definitionDH902748|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H06, 5' end.DH902749|Mus musculus domesticus DNA, BAC clone: B6Ng01-090H06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,860,246 - 73,861,362)(73,652,539 - 73,653,477)
sequence
gaattcaggctctgcaatggaattcagatgagtttttgtccagtgcagtt
tggagaaaaaacagttgagtttggttgtgttcaattctgagacaggtttt
accaagacggttttacagagacagattgtagagagagcaagccagacaca
ggtgaagatagaatgagccagagaaagaggagacagaagattaggacaaa
ttagaaacagatgttagtttgaagctaagcatattctgtgagaggagtag
agagaagtcagtttgaatcagtcatctttgagaggagttttgagccagaa
ctgctgagttgaaccagctagccagagctcagaaagagctagaaaggcaa
catttacacatatttatcatttgtgggcttgagttgtcataaaacctact
ttaaaaccattataatccaacatgagataaattaaatacatacatacata
catacatacatacataaatactattcattaggaataacccttgttattca
tgcaatgggtacactagttctggagaaaggagatgtattacagagactgg
aaacaggctaacaagagggacaagactggaagagggaaaggatgaccaag
gcagaagaagcatgtttgtcgatctgtttatccattatattacagaatca
tctttgataaataaaacaggtaatggataagagatcaaaggatgagaggt
gtggcgatccatggcttttggtaggttttgtacgaatacttcatcgatga
aatgagccacacttcacctggatatagaaggaggataaaggagcccacaa
atcaacactctcttttcatcctaataacttagttcttatttttatgagaa
tattgactatgtcttcccccaaatataagagactgttaaatcacaagtaa
ttagaaaacaattgataataaaaagctacctgttctctagttgtagcagg
tatgtgtttacaaagacaaacatatctgagagagagcaacatagccacta
aaagcactctacatgacatatgaacatactgaccataattgagaatctaa
tatgcaaattttacttaaatatctttatttatctcccacagaattgtttt
tcgaccattca
gaattccaagaccaaggtcttgctaaggacgaactaggactgttggaaca
ctggtggaaggcttaagccatgtcagaattcaattttaaaaagcacttat
aataggaaaatactgaaagagagcacatggatccatacactagactaacg
cgggattggaacgcgggaatgaaaaattactgtatgggtagggaacgcta
gactccaggaggagagcttccttgaaactcttttgcctcatgagtgactt
ttaagcctttcggcttgtccagttgactcaaccggagagcatagcaatgc
cccaatacaggggaacgccagggccaaaaagtgggagagggtgggtaggg
gagcagggcatggggagggtacagggaactttcaggatagcatttgaaat
ttgaaatgtatataaagaaaatatctaataaaattgtgcaaaaaaaagca
caataaaatcaacatacaaacacaatggcaaagaaaaaaaatattatgtt
agataaaagaaagaaaactaagatgagcctttgagaggaggtattacaac
atcccatacctcagctcttcacaaatgagaaaaaaaaaagtggaaaaaaa
cattgattttggcacacagtcacaagtagcttttcctgggagctgtgttg
taaggtttccgatattaaggtggccagggaggaaactcttcacatttgaa
gtttaaatggtgagtgcagacttgtctgtttttagaaagaccctggttac
attttttattttatttttttaccctgagaggaaaaaaaaatgggtctttc
cttttggagcagtataacttggaagctaattgcagaatgtgaaaaaaggc
caaatgaactgaaaggctgtgagttgagaggtactgccagctgtgcttct
gtgtggcgtccagaataacattcatagtgtattctttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_73860246_73861362
seq2: B6Ng01-090H06.b_48_1149 (reverse)

seq1  GAAAAACAAATCTGTGGGGAGATAAATAAAGATATTTTAGTAAAATTTGC  50
      ||||||||| ||||| ||||||||||||||||||||| ||||||||||||
seq2  GAAAAACAATTCTGT-GGGAGATAAATAAAGATATTTAAGTAAAATTTGC  49

seq1  CAATATAGATTTCTCAATTATTGTTCAGTATTGTTCATTATTTGTCATGT  100
        || |||| |||||||||| || |||||| |||||   || ||||||||
seq2  ATAT-TAGA-TTCTCAATTA-TGGTCAGTA-TGTTC---ATATGTCATGT  92

seq1  AGAGTTGCTTTTAGTGGCTATGTTTGCTCTCTCTTCAAGATATGTTTTGT  150
      |||| ||||||||||||||||| |||||||||||   ||||||| |||||
seq2  AGAG-TGCTTTTAGTGGCTATG-TTGCTCTCTCT--CAGATATG-TTTGT  137

seq1  CTTTGTAAACACATACCCTGCTACAACCTAGAGAACAGGTAGCTTTTTAT  200
      ||||||||||||||| |||||||||| |||||||||||||||||||||||
seq2  CTTTGTAAACACATA-CCTGCTACAA-CTAGAGAACAGGTAGCTTTTTAT  185

seq1  TATCAATTGTTTTCTAATTACTTGTGATTTAACAGTCTCTTATATTTGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAATTGTTTTCTAATTACTTGTGATTTAACAGTCTCTTATATTTGGG  235

seq1  GGAAGACATAGTCAATATTCTCATAAAAATAAGAACTAAGTTATTAGGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACATAGTCAATATTCTCATAAAAATAAGAACTAAGTTATTAGGAT  285

seq1  GAAAAGAGAGTGTTGATTTGTGGGCTCCTTTATCCTCCTTCTATATCCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGAGAGTGTTGATTTGTGGGCTCCTTTATCCTCCTTCTATATCCAG  335

seq1  GTGAAGTGTGGCTCATTTCATCGATGAAGTATTCGTACAAAACCTACCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAGTGTGGCTCATTTCATCGATGAAGTATTCGTACAAAACCTACCAA  385

seq1  AAGCCATGGATCGCCACACCTCTCATCCTTTGATCTCTTATCCATTACCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCATGGATCGCCACACCTCTCATCCTTTGATCTCTTATCCATTACCT  435

seq1  GTTTTATTTATCAAAGATGATTCTGTAATATAATGGATAAACAGATCGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTATTTATCAAAGATGATTCTGTAATATAATGGATAAACAGATCGAC  485

seq1  AAACATGCTTCTTCTGCCTTGGTCATCCTTTCCCTCTTCCAGTCTTGTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATGCTTCTTCTGCCTTGGTCATCCTTTCCCTCTTCCAGTCTTGTCC  535

seq1  CTCTTGTTAGCCTGTTTCCAGTCTCTGTAATACATCTCCTTTCTCCAGAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTGTTAGCCTGTTTCCAGTCTCTGTAATACATCTCCTTTCTCCAGAA  585

seq1  CTAGTGTACCCATTGCATGAATAACAAGGGTTATTCCTAATGAATAGTAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGTACCCATTGCATGAATAACAAGGGTTATTCCTAATGAATAGTAT  635

seq1  TTATGTATGTATGTATGTATGTATGTATGTATTTAATTTATCTCATGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTATGTATGTATGTATGTATGTATGTATTTAATTTATCTCATGTTG  685

seq1  GATTATAATGGTTTTAAAGTAGGTTTTATGACAACTCAAGCCCACAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATAATGGTTTTAAAGTAGGTTTTATGACAACTCAAGCCCACAAATG  735

seq1  ATAAATATGTGTAAATGTTGCCTTTCTAGCTCTTTCTGAGCTCTGGCTAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATATGTGTAAATGTTGCCTTTCTAGCTCTTTCTGAGCTCTGGCTAG  785

seq1  CTGGTTCAACTCAGCAGTTCTGGCTCAAAACTCCTCTCAAAGATGACTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCAACTCAGCAGTTCTGGCTCAAAACTCCTCTCAAAGATGACTGA  835

seq1  TTCAAACTGACTTCTCTCTACTCCTCTCACAGAATATGCTTAGCTTCAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTGACTTCTCTCTACTCCTCTCACAGAATATGCTTAGCTTCAAA  885

seq1  CTAACATCTGTTTCTAATTTGTCCTAATCTTCTGTCTCCTCTTTCTCTGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACATCTGTTTCTAATTTGTCCTAATCTTCTGTCTCCTCTTTCTCTGG  935

seq1  CTCATTCTATCTTCACCTGTGTCTGGCTTGCTCTCTCTACAATCTGTCTC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTCTATCTTCACCTGTGTCTGGCTTGCTCTCTCTACAATCTGTCTC  985

seq1  TGTAAAACCGTCTTGGTAAAACCTGTCTCAGAATTGAACACAACCAAACT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAAACCGTCTTGGTAAAACCTGTCTCAGAATTGAACACAACCAAACT  1035

seq1  CAACTGTTTTTTCTCCAAACTGCACTGGACAAAAACTCATCTGAATTCCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTGTTTTTTCTCCAAACTGCACTGGACAAAAACTCATCTGAATTCCA  1085

seq1  TTGCAGAGCCTGAATTC  1117
      |||||||||||||||||
seq2  TTGCAGAGCCTGAATTC  1102

seq1: chr16_73652539_73653477
seq2: B6Ng01-090H06.g_67_1004

seq1  GAATTCCAAGACCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGACCAAGGTCTTGCTAAGGACGAACTAGGACTGTTGGAACA  50

seq1  CTGGTGGAAGGCTTAAGCCATGTCAGAATTCAATTTTAAAAAGCACTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGAAGGCTTAAGCCATGTCAGAATTCAATTTTAAAAAGCACTTAT  100

seq1  AATAGGAAAATACTGAAAGAGAGCACATGGATCCATACACTAGACTAACG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAAATACTGAAAGAGAGCACATGGATCCATACACTAGACTAACG  150

seq1  CGGGATTGGAACGCGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGATTGGAACGCGGGAATGAAAAATTACTGTATGGGTAGGGAACGCTA  200

seq1  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCAGGAGGAGAGCTTCCTTGAAACTCTTTTGCCTCATGAGTGACTT  250

seq1  TTAAGCCTTTCGGCTTGTCCAGTTGACTCAACCGGAGAGCATAGCAATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGCCTTTCGGCTTGTCCAGTTGACTCAACCGGAGAGCATAGCAATGC  300

seq1  CCCAATACAGGGGAACGCCAGGGCCAAAAAGTGGGAGAGGGTGGGTAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAATACAGGGGAACGCCAGGGCCAAAAAGTGGGAGAGGGTGGGTAGGG  350

seq1  GAGCAGGGCATGGGGAGGGTACAGGGAACTTTCAGGATAGCATTTGAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAGGGCATGGGGAGGGTACAGGGAACTTTCAGGATAGCATTTGAAAT  400

seq1  TTGAAATGTATATAAAGAAAATATCTAATAAAATTGTGCAAAAAAAAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATGTATATAAAGAAAATATCTAATAAAATTGTGCAAAAAAAAGCA  450

seq1  CAATAAAATCAACATACAAACACAATGGCAAAGAAAAAAAATATTATGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAATCAACATACAAACACAATGGCAAAGAAAAAAAATATTATGTT  500

seq1  AGATAAAAGAAAGAAAACTAAGATGAGCCTTTGAGAGGAGGTATTACAAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAAAGAAAGAAAACTAAGATGAGCCTTTGAGAGGAGGTATTACAAC  550

seq1  ATCCCATACCTCAGCTCTTCACAAATGAGAAAAAAAAAAGTGGAAAAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATACCTCAGCTCTTCACAAATGAGAAAAAAAAAAGTGGAAAAAAA  600

seq1  CATTGATTTTGGCACACAGTCACAAGTAGC-TTTCCTGGGAGCTGTGTTG  649
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATTGATTTTGGCACACAGTCACAAGTAGCTTTTCCTGGGAGCTGTGTTG  650

seq1  TAAGGTTTCCGATATTAAGGTGGCCAGGGAGGAAGC-CTTCACATTTGAA  698
      |||||||||||||||||||||||||||||||||| | |||||||||||||
seq2  TAAGGTTTCCGATATTAAGGTGGCCAGGGAGGAAACTCTTCACATTTGAA  700

seq1  GTTTAAATGGTGAGTGCAGACTTGTCTGTTTTTAGAAAGACCCTGGTAAC  748
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTTTAAATGGTGAGTGCAGACTTGTCTGTTTTTAGAAAGACCCTGGTTAC  750

seq1  AATTTTTATTTTA-TTTTTTACCCTGAGAGGAAAAAAAAAT-GGTCTTTC  796
      | ||||||||||| ||||||||||||||||||||||||||| ||||||||
seq2  ATTTTTTATTTTATTTTTTTACCCTGAGAGGAAAAAAAAATGGGTCTTTC  800

seq1  CTTTTGGAGCAAGAAAAACTTAGGAAGCTAATAGAAGAATGTGAAAAAAT  846
      |||||||||| || | ||||| |||||||||| | |||||||||||||| 
seq2  CTTTTGGAGC-AGTATAACTT-GGAAGCTAATTGCAGAATGTGAAAAAAG  848

seq1  GCCAAATGAACTGAAAAGGCATGAGGAGTGAGAAGGTACATGCCAGCTGT  896
      |||||||||||||||| |   ||||   |||| |||||| ||||||||||
seq2  GCCAAATGAACTGAAAGGCTGTGAG--TTGAG-AGGTAC-TGCCAGCTGT  894

seq1  GC-TCTGTGTGGTGTCCAGGATAACACTCAAATGTTATTCTTTT  939
      || ||||||||| |||||| |||||| ||| |   |||||||||
seq2  GCTTCTGTGTGGCGTCCAGAATAACATTCATAGTGTATTCTTTT  938