BAC Information

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BAC

Clone NameB6Ng01-090P05
Chromosome16 (Build37)
Map Location 35,422,376 - 35,543,213
singlet/doubletdoublet
Overlap genePdia5, Sema5b
Upstream geneKalrn, Ropn1, Ccdc14, Mylk, Ptplb, Adcy5, Sec22a
Downstream geneEG546663, Dirc2, Hspbap1, Parp14, LOC667133, LOC100043217, Dtx3l, Parp9, Kpna1, Wdr5b, 2310056P07Rik, Ccdc58, Csta, Stfa2l1, EG433016, EG627962, EG408196, 2010005H15Rik, Stfa1, EG209324, LOC100038854, BC100530, LOC639105, Stfa2, Stfa3, Casr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-090P05.bB6Ng01-090P05.g
ACCDH903115DH903116
length1,143137
definitionDH903115|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P05, 5' end.DH903116|Mus musculus domesticus DNA, BAC clone: B6Ng01-090P05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,422,376 - 35,423,522)(35,543,077 - 35,543,213)
sequence
gaattctctatgatcatctcagtctgggcatatggaccagcagggggcac
tctagatatcagcctcactgcctgctcagctaccaggcaagggcagaccc
tctctgcaccttggacccacgtgaggtaaatggagggccagttatcttgg
gacatacccggtctgactcctcagcccttgctggcttcagggaggacact
caagcttattggggatggagcttctctgagttctgccaagggacacttgt
gattatatatatagcattcagcctgcatgtacacctgcaggccagaaaag
ggcactagatgtcattatagatgattgtgagccaccatgtggttgctggg
aattgaactcaggacctctggaggaaccgccagtgctcttaacctctgag
ctatctctccagtccctgatcaggatgtttgtgccgttctgatggagata
caggccaggggcatgagctgaggagagacaccatgtcagctcccactgca
ttgcctatctaacaagtcccaaggcagtgtcctactctggggaagggggt
ggtaggggcagcagcgttccactcacatggggcgtggaacatgacgagga
cagaggagtgctccttcacaaactggtcaaagtcttcatcggtcaggtga
taaacggagccgtcctcatctgcccagggagtctcggggacctggggctg
tggtggcagtggactggaagaccaaagaaacaggcagagctcagagcaag
ccctggggtctgaacagcccttatcaatcaaatccagccccctggacaca
tagctcccacaccaagatcttttatacactggaaactggatccagagatg
ggatggagagggactgccctgcccatctctgcctccttccccaagcagaa
aggtacttagctgatacccattgcgcatggccacatggctgttggttgct
aatacttttgaaacagctcagggaatcttttttttcccggaagtgttttg
ctagcttcttcaaggtagaagcaaacttccagcaggttgcaaagagcaaa
cagctacgtgcccagtaagcactgtgagctggaatgtcctgctcgagcca
cccattgaaggacacaggaggataaagaatgtgagctaaggac
tcctctgccccttcctcaaggtcgtgggctccagaaagacaagaagccac
ttgtaaatgccaagaaaaaaaaacaagggggggtaaggaagactggaaag
gggtggactaaaagatgggggtgggtaggtagggagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_35422376_35423522
seq2: B6Ng01-090P05.b_49_1191

seq1  GAATTCTCTATGATCATCTCAGTCTGGGCATATGGACCAGCAGGGGGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTATGATCATCTCAGTCTGGGCATATGGACCAGCAGGGGGCAC  50

seq1  TCTAGATATCAGCCTCACTGCCTGCTCAGCTACCAGGCAAGGGCAGACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGATATCAGCCTCACTGCCTGCTCAGCTACCAGGCAAGGGCAGACCC  100

seq1  TCTCTGCACCTTGGACCCACCCTAGGTAAATGGAGGGCCAGTTATCTTGG  150
      ||||||||||||||||||||   |||||||||||||||||||||||||||
seq2  TCTCTGCACCTTGGACCCACGTGAGGTAAATGGAGGGCCAGTTATCTTGG  150

seq1  GACATACCCGGTCTGACTCCTCAGCCCTTGCTGGCTTCAGGGAGGACACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATACCCGGTCTGACTCCTCAGCCCTTGCTGGCTTCAGGGAGGACACT  200

seq1  CAAGCTTATTGGGGATGGAGCTTCTCTGAGTTCTGCCAAGGGACACTTGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTTATTGGGGATGGAGCTTCTCTGAGTTCTGCCAAGGGACACTTGT  250

seq1  GATTATATATATAGCATTCAGCCTGCATGTACACCTGCAGGCCAGAAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATATATATAGCATTCAGCCTGCATGTACACCTGCAGGCCAGAAAAG  300

seq1  GGCACTAGATGTCATTATAGATGATTGTGAGCCACCATGTGGTTGCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTAGATGTCATTATAGATGATTGTGAGCCACCATGTGGTTGCTGGG  350

seq1  AATTGAACTCAGGACCTCTGGAGGAACCGCCAGTGCTCTTAACCTCTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTCAGGACCTCTGGAGGAACCGCCAGTGCTCTTAACCTCTGAG  400

seq1  CTATCTCTCCAGTCCCTGATCAGGATGTTTGTGCCGTTCTGATGGAGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTCTCCAGTCCCTGATCAGGATGTTTGTGCCGTTCTGATGGAGATA  450

seq1  CAGGCCAGGGGCATGAGCTGAGGAGAGACACCATGTCAGCTCCCACTGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGGGGCATGAGCTGAGGAGAGACACCATGTCAGCTCCCACTGCA  500

seq1  TTGCCTATCTAACAAGTCCCAAGGCAGTGTCCTACTCTGGGGAAGGGGGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTATCTAACAAGTCCCAAGGCAGTGTCCTACTCTGGGGAAGGGGGT  550

seq1  GGTAGGGGCAGCAGCGTTCCACTCACATGGGGCGTGGAACATGACGAGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGGGGCAGCAGCGTTCCACTCACATGGGGCGTGGAACATGACGAGGA  600

seq1  CAGAGGAGTGCTCCTTCACAAACTGGTCAAAGTCTTCATCGGTCAGGTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGAGTGCTCCTTCACAAACTGGTCAAAGTCTTCATCGGTCAGGTGA  650

seq1  TAAACGGAGCCGCCCTCATCTGCCCAGGGAGTCTCGGGGACCTGGGGCTG  700
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TAAACGGAGCCGTCCTCATCTGCCCAGGGAGTCTCGGGGACCTGGGGCTG  700

seq1  TGGTGGCAGTGGACTGGAAGACCAAAGAAACAGGCAGAGCTCAGAGCAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGCAGTGGACTGGAAGACCAAAGAAACAGGCAGAGCTCAGAGCAAG  750

seq1  CCCTGGGGTCTGAACAGCCCTTATCAATCAAATCCAGCCCCCTGGACACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGGGTCTGAACAGCCCTTATCAATCAAATCCAGCCCCCTGGACACA  800

seq1  TAGCTCCCACACCAAGATCTTTTATACACTGGAAACTGGATCCAGAGAT-  849
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAGCTCCCACACCAAGATCTTTTATACACTGGAAACTGGATCCAGAGATG  850

seq1  GGATGGAGAGGGACTGCCCTGCCCATCTCTGCCTCC-TCCCCAAGCAGAA  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GGATGGAGAGGGACTGCCCTGCCCATCTCTGCCTCCTTCCCCAAGCAGAA  900

seq1  AGGTACTTAGCTGATACCCATTGCGCATGGCCACATGGCTGTTGTTTGCT  948
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGTACTTAGCTGATACCCATTGCGCATGGCCACATGGCTGTTGGTTGCT  950

seq1  ATAGCTTTCTGAGACAGCTCAGGGAATCTTTTTTTTCCCCGGGAGTG-TT  997
      |   |||| ||| ||||||||||||||||||||||| ||||| |||| ||
seq2  AATACTTT-TGAAACAGCTCAGGGAATCTTTTTTTT-CCCGGAAGTGTTT  998

seq1  TGCTAGCATCTTCAAGGTAG-AGCAAACTTCCAGCAAGTTGGCAAGAGCA  1046
      ||||||| |||||||||||| ||||||||||||||| ||||  |||||||
seq2  TGCTAGCTTCTTCAAGGTAGAAGCAAACTTCCAGCAGGTTGCAAAGAGCA  1048

seq1  AACAGCTACGGTGCCCAGTAAGCACTGTGGAAGCTGG-ATGTCCTGCTCT  1095
      ||||||||| |||||||||||||||||||  |||||| ||||||||||| 
seq2  AACAGCTAC-GTGCCCAGTAAGCACTGTG--AGCTGGAATGTCCTGCTC-  1094

seq1  GAGCCACCCACTGGTAGGACACAGGAGGAAGAAAGAA-GTGAGGCTAAAG  1144
      |||||||||| | | ||||||||||||| | |||||| |||| ||| |||
seq2  GAGCCACCCA-TTGAAGGACACAGGAGG-ATAAAGAATGTGA-GCT-AAG  1140

seq1  GAC  1147
      |||
seq2  GAC  1143

seq1: chr16_35543077_35543213
seq2: B6Ng01-090P05.g_77_213 (reverse)

seq1  CCTCCCTACCTACCCACCCCCATCTTTTAGTCCACCCCTTTCCAGTCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCTACCTACCCACCCCCATCTTTTAGTCCACCCCTTTCCAGTCTTC  50

seq1  CTTACCCCCCCTTGTTTTTTTTTCTTGGCATTTACAAGTGGCTTCTTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCCCCCCTTGTTTTTTTTTCTTGGCATTTACAAGTGGCTTCTTGTC  100

seq1  TTTCTGGAGCCCACGACCTTGAGGAAGGGGCAGAGGA  137
      |||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGAGCCCACGACCTTGAGGAAGGGGCAGAGGA  137