BAC Information

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BAC

Clone NameB6Ng01-091H06
Chromosome16 (Build37)
Map Location 16,708,832 - 16,709,838
singlet/doubletsinglet
Overlap gene4933404G15Rik
Upstream genePrkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743, Fgd4, Olfr19
Downstream geneSpag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091H06.bB6Ng01-091H06.g
ACCDH903473DH903474
length9971,250
definitionDH903473|Mus musculus domesticus DNA, BAC clone: B6Ng01-091H06, 5' end.DH903474|Mus musculus domesticus DNA, BAC clone: B6Ng01-091H06, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctgtggagacctgtggtaccacacagcagctctatgctaaatcct
tcagtgtcaatgtcattaatagagttctttctctgtgtcttctttcaagg
attgatcattgggcccaggcccgtggttcctaaaccacaggcctgtgttc
ggcctggtacagcagaactgctgcagggggaaccaggccagaagaggcag
tgtatacaaccttttgttacctgtcagacacctccaccaaccaggactcc
atctctgtaaccccatctcctacagagtgtgagtaattagctctctactc
tttgacatcattgttccctatgcactagtgcatggacaaagaagtcatac
acataaacttcctgctatgaagagacagccatcctgactctgcagtccag
gtgagagaattacatttcccacctgattcatcatctttccatgctgtagc
ccctgtggtacctggttcaaacaggtgggacttgcagtgtcagtgtttct
cagcactaaatattcaagacatactatgacattgtaagtagaagtcatgg
cccagtgtggagtaccatcgtatttagggagtatcctttctatgagcttc
ttggattggaaaattcttctaagcaagcaatgaaagattttcatggcctt
tcttatgaggtcttggaaatggtagaaatggcaaggctctgaaatttgtt
acctcattatatatttcctgtcattgtgaaatattatttggtactacaat
atttagactgtggattctggaagcaatgaacctgaggcatatgtctgccc
atctcccctcaaggcaactgctccataccttaagacaatgtgaatgaaat
gtgtttctgagaggcaaaataacagaatcctttatgtacatcaaacacga
gccaaactagttccttcaaaaatcctaaaatacaggctctctgctaggag
actagactcatcaagaacatgtcacttgtgtgcctttgagtcagcaa
gaattcagcacctaaacctataataaccacaaaacctagatgtccagagg
ccaccataagaacataatcaacaacagccagagtaatatggcaccaccag
agcccagctatcctactacatcaaaccctgtgtatcctgacacaactgaa
acacaagaaaattaccttaaaactagtcttaaaagatgatagaggcatct
accattcaccttttcttccttaaggaagaaagaaataaaccccttgaaga
aatacagggaaatacaatcaaacaggtgaaggaaatgaataaaattgttc
agaatctgaaaatggaaatagaagcaataaagaaaacacaaactgaagga
attctaaaaatgcaaaacataggaagctgaacgggaactgcagaggcaag
cttcaccgacagaatacaagaaatgggggagaatctcaggtattgaagct
atagcagaagaaatgggtacatcagtgaaagaaaatgttaaatctaaaac
tttactgacataaaacatctactaaatctgggcactatgaaaagaccaaa
actaagaataataggaatacaaggaagacaagattcccagctcaaaggtt
cagaaaatattttcaataatgtcatagaagaaaaattccttaacctaaaa
aaagaaaacaccaaatagagtggatcagaaaagaaaactgttctgccact
taataatcaaagcactaaatgaacagagcaagtagatattaaaagctaaa
aggggaaaagaccaagtaacatacaaaggcagaactatcaaaattacact
catcaacagaaactctaaaagccagaagggcttgggcagatgccttacag
tccctaagaaatcacaatgccagtccagacttctaaacccagaaaaactt
tcaatcaccatagaaagaaaaatcaagatactccatgacaaaaacaattt
aaacaatatcttatctgcaaatctagcagcgctacagaggatattaaaag
ggaaactactactcaggagttaaacacccagaaacacaggaaataaataa
ttccaccaggtgaacacaagagattcccataggaagcatcaaatacagaa
ttaacaattgtctttaacatctctcaacatcaacggactaattccataaa
aagactagggtacgaatggagtgaagcagatcttcatcggtcgcttacaa
gagatatacctgtcaactctgttccttcatctcagggcctgctgtcacga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16708832_16709838
seq2: B6Ng01-091H06.b_43_1039 (reverse)

seq1  TTGCTGACTCAAAGGGCAACACAAGTGACCATGTTCTTTGATGAGTCTAG  50
      |||||||||||||||   |||||||||| ||||||| |||||||||||||
seq2  TTGCTGACTCAAAGG--CACACAAGTGA-CATGTTC-TTGATGAGTCTAG  46

seq1  TCTCCTAGGCAGAGGAGCCCTGGTATTTTAGGATTTTTGAAAGGAACTAG  100
      ||||||| ||||| |||||   ||||||||||||||||| ||||||||||
seq2  TCTCCTA-GCAGA-GAGCC--TGTATTTTAGGATTTTTG-AAGGAACTAG  91

seq1  TTTGGCCTCGTGTTTGATGTACCTAAAGGATTCTGTTATTTTGCCTCTCA  150
      ||||| |||||||||||||||| |||||||||||||||||||||||||||
seq2  TTTGG-CTCGTGTTTGATGTACATAAAGGATTCTGTTATTTTGCCTCTCA  140

seq1  GAAACACATTTCATTCACATTGTCTTAAGGTATGGAGCAGTTGCCTTGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACATTTCATTCACATTGTCTTAAGGTATGGAGCAGTTGCCTTGAG  190

seq1  GGGAGATGGGCAGACATATGCCTCAGGTTCATTGCTTCCAGAATCCACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGATGGGCAGACATATGCCTCAGGTTCATTGCTTCCAGAATCCACAG  240

seq1  TCTAAATATTGTAGTACCAAATAATATTTCACAATGACAGGAAATATATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAATATTGTAGTACCAAATAATATTTCACAATGACAGGAAATATATA  290

seq1  ATGAGGTAACAAATTTCAGAGCCTTGCCATTTCTACCATTTCCAAGACCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGGTAACAAATTTCAGAGCCTTGCCATTTCTACCATTTCCAAGACCT  340

seq1  CATAAGAAAGGCCATGAAAATCTTTCATTGCTTGCTTAGAAGAATTTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAGAAAGGCCATGAAAATCTTTCATTGCTTGCTTAGAAGAATTTTCC  390

seq1  AATCCAAGAAGCTCATAGAAAGGATACTCCCTAAATACGATGGTACTCCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCAAGAAGCTCATAGAAAGGATACTCCCTAAATACGATGGTACTCCA  440

seq1  CACTGGGCCATGACTTCTACTTACAATGTCATAGTATGTCTTGAATATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGGCCATGACTTCTACTTACAATGTCATAGTATGTCTTGAATATTT  490

seq1  AGTGCTGAGAAACACTGACACTGCAAGTCCCACCTGTTTGAACCAGGTAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGAGAAACACTGACACTGCAAGTCCCACCTGTTTGAACCAGGTAC  540

seq1  CACAGGGGCTACAGCATGGAAAGATGATGAATCAGGTGGGAAATGTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGGCTACAGCATGGAAAGATGATGAATCAGGTGGGAAATGTAATT  590

seq1  CTCTCACCTGGACTGCAGAGTCAGGATGGCTGTCTCTTCATAGCAGGAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACCTGGACTGCAGAGTCAGGATGGCTGTCTCTTCATAGCAGGAAG  640

seq1  TTTATGTGTATGACTTCTTTGTCCATGCACTAGTGCATAGGGAACAATGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGTGTATGACTTCTTTGTCCATGCACTAGTGCATAGGGAACAATGA  690

seq1  TGTCAAAGAGTAGAGAGCTAATTACTCACACTCTGTAGGAGATGGGGTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCAAAGAGTAGAGAGCTAATTACTCACACTCTGTAGGAGATGGGGTTA  740

seq1  CAGAGATGGAGTCCTGGTTGGTGGAGGTGTCTGACAGGTAACAAAAGGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGATGGAGTCCTGGTTGGTGGAGGTGTCTGACAGGTAACAAAAGGTT  790

seq1  GTATACACTGCCTCTTCTGGCCTGGTTCCCCCTGCAGCAGTTCTGCTGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACACTGCCTCTTCTGGCCTGGTTCCCCCTGCAGCAGTTCTGCTGTA  840

seq1  CCAGGCCGAACACAGGCCTGTGGTTTAGGAACCACGGGCCTGGGCCCAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCGAACACAGGCCTGTGGTTTAGGAACCACGGGCCTGGGCCCAAT  890

seq1  GATCAATCCTTGAAAGAAGACACAGAGAAAGAACTCTATTAATGACATTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAATCCTTGAAAGAAGACACAGAGAAAGAACTCTATTAATGACATTG  940

seq1  ACACTGAAGGATTTAGCATAGAGCTGCTGTGTGGTACCACAGGTCTCCAC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGAAGGATTTAGCATAGAGCTGCTGTGTGGTACCACAGGTCTCCAC  990

seq1  AGAATTC  1007
      |||||||
seq2  AGAATTC  997