BAC Information

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BAC

Clone NameB6Ng01-091J01
Chromosome16 (Build37)4 (Build37)
Map Location 16,420,100 - 16,421,24486,240,961 - 86,241,127
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC547302, EG632352, Ube2v2, LOC665682, Mcm4, Prkdc, 2410018G20Rik, Cebpd, 2310008H04Rik, LOC100043266, LOC224010, D16Ertd727e, Pkp2, EG433003, Yars2, Dnm1l, LOC665743
Downstream geneFgd4, Olfr19, 4933404G15Rik, Spag6, EG665562, EG436405, Vpreb1, Top3b, Ppm1f, LOC100042783, EG623519, Mapk1, Ypel1, Ppil2, 2610318N02Rik, Sdf2l1, LOC623568, Ccdc116, 1810015A11Rik, Ube2l3, Gm603, Hic2, D16Bwg1494e, Pik4ca, Serpind1, Snap29
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-091J01.bB6Ng01-091J01.g
ACCDH903554DH903555
length1,129927
definitionDH903554|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J01, 5' end.DH903555|Mus musculus domesticus DNA, BAC clone: B6Ng01-091J01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(16,420,100 - 16,421,244)(86,240,961 - 86,241,127)
sequence
gaattctccctttttatcccatggactctcagatgaactatggctgtcta
ttaggttgtgcttgtgactaaaatcttatgttgagtttactgtttaagtt
aatacttttctcatattagacttttttcctttcttttccattctccaaac
attaccacttttactgtactgtttactaggaatccatagaatgtcttcac
tacacacaatctttaagggctacacttgagatgtagagtacaatttatca
gaaattgagaccaccatacatttatacacctcatgttgcacaagaaacgt
ctcattttttttctactccaaaggagcaagggaaccaattaggttgcttt
cctccatgaaataccagacatgaacattaacattaaaccatctatttaga
atcactaatgggcaaaacacaaagctatctccttattccctactaaatga
gagtcatatagaaagaaattgtacattgtttctcttttctagttgtcagc
attgatgctgtgtttgagtgggaggaaagaaaccaggtgtgaagggtacc
tattgataaaattaaacaataactatacatcttactttatttttcatatt
tcaagaaaagaaaagcagtaaatatgtagaatgactatcagaataaggat
gacttctgtaaatataagcagaataatgagtgaactgtctcacttagaag
atttatgtcagataatatttaaaaaaaaaactatttgatcagcaagaaga
gtacatgtttgcctaccagcaaattcttgaatagaaggaatatgattaga
tattcagtgtagttcaacttagattattgaaaggatactcataaaaagaa
tgttagcatgcttctagtgttcattcagtaaggagtgtgagtgccagaag
aggatcttctctggttctcacctttacttctccccacactgagccaagca
caaaccactttcccatctctctcaaataaccacaaatacttttagtagag
aaaagtaatagataatattagttactattaagactcactctgggctagag
aattctatgcaggatgagaaaacagttcagaaagtcttcggagaccacat
aaagcaagcaagccaggcaacataggtgg
gaattcttctctaataccatttggccctggggttttgggagttttggttt
ttggtttttgatttgtttgcttttagttaagagacttttttttttttttt
tcccgagactgggtttctctgtagccctggctgtcctggaactcactttg
tagaccaggctggcctcgaactcagaaatctgcctgcctctgcctcctga
gtgctggaattaaaggtgtgcgccaccactccagctttctctccaacttt
ttaatgtaggcacttagtgcacttacaaccgccctcattgtgtccataag
cttgggtatgttatgtatttattttaatttaattctaaacagtttttgat
ttcttccttaatttcagtctctaatctttctgttgttattgtggatattg
ttgtctggctttaatctgcacaggtcagatttgatgcagggtgttatttc
aattttcttattgtttgtatttgttctgtgtatgggtatgtgttcaattt
tggagaaagttctatgaggtgcaaagaaggtatattcttttgtgtttggg
gaaatgttctgtaaatttctgttaggttcatttgatttaatatcagtcaa
ctccagcatttctctgtttatgttttgcctggatggcctgtctacaagtg
agagttggatattgaactctcccattatcaacgtgtgagagtcaatatgt
gatttaagctttagtaatgtttcttttgtgaacttggatactcttgtgtt
tggtgcatacatgttaagaattgtaatgccctgttggttcacttttcttt
ctttgatgactatgaagtatccttctctatctcttctgactagctttggt
ttgaagttatttttttagttattaaatggctgcacagcttgctgtccatt
tgctggatatcttttccatccttgtac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_16420100_16421244
seq2: B6Ng01-091J01.b_46_1174 (reverse)

seq1  CCACCTCTGTTGCCCTTGCTTGCCTGGCCTTTATGTGGTCTCCGGAGACC  50
      |||||| ||||| ||| |||||| ||  |||||||||||||||| ||| |
seq2  CCACCTATGTTG-CCTGGCTTGCTTG--CTTTATGTGGTCTCCGAAGA-C  46

seq1  TGTCTGAACTG-TTTCTCATCCTTGCATAGAATTCTCCTTAGCCCCAGAG  99
      | ||||||||| |||||||||| ||||||||||||||  ||| |||||||
seq2  TTTCTGAACTGTTTTCTCATCC-TGCATAGAATTCTC--TAG-CCCAGAG  92

seq1  TTGAGTTCTTAATAAGTAACTAATATTATTCTATTACTTTTTTCTCCTAC  149
       |||| ||||||| |||||||||||||| |||||||||||| |   ||||
seq2  -TGAG-TCTTAAT-AGTAACTAATATTA-TCTATTACTTTTCT---CTAC  135

seq1  TAAAAGTATTTGTGGTTATTTTGAGAGAGATGGGGAAAGTGGTTTGTGCT  199
      |||||||||||||||||| |||||||||||| ||||||||||||||||||
seq2  TAAAAGTATTTGTGGTTA-TTTGAGAGAGAT-GGGAAAGTGGTTTGTGCT  183

seq1  TGGCTCAGTGTGGGGAGAAGTAAAGGTGAGAACCAGAGAAGATCCTCTTC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCAGTGTGGGGAGAAGTAAAGGTGAGAACCAGAGAAGATCCTCTTC  233

seq1  TGGCACTCACACTCCTTACTGAATGAACACTAGAAGCATGCTAACATTCT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTCACACTCCTTACTGAATGAACACTAGAAGCATGCTAACATTCT  283

seq1  TTTTATGAGTATCCTTTCAATAATCTAAGTTGAACTACACTGAATATCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATGAGTATCCTTTCAATAATCTAAGTTGAACTACACTGAATATCTA  333

seq1  ATCATATTCCTTCTATTCAAGAATTTGCTGGTAGGCAAACATGTACTCTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATATTCCTTCTATTCAAGAATTTGCTGGTAGGCAAACATGTACTCTT  383

seq1  CTTGCTGATCAAATAGTTTTTTTTTTAAATATTATCTGACATAAATCTTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCTGATCAAATAGTTTTTTTTTTAAATATTATCTGACATAAATCTTC  433

seq1  TAAGTGAGACAGTTCACTCATTATTCTGCTTATATTTACAGAAGTCATCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGAGACAGTTCACTCATTATTCTGCTTATATTTACAGAAGTCATCC  483

seq1  TTATTCTGATAGTCATTCTACATATTTACTGCTTTTCTTTTCTTGAAATA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCTGATAGTCATTCTACATATTTACTGCTTTTCTTTTCTTGAAATA  533

seq1  TGAAAAATAAAGTAAGATGTATAGTTATTGTTTAATTTTATCAATAGGTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAATAAAGTAAGATGTATAGTTATTGTTTAATTTTATCAATAGGTA  583

seq1  CCCTTCACACCTGGTTTCTTTCCTCCCACTCAAACACAGCATCAATGCTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTCACACCTGGTTTCTTTCCTCCCACTCAAACACAGCATCAATGCTG  633

seq1  ACAACTAGAAAAGAGAAACAATGTACAATTTCTTTCTATATGACTCTCAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTAGAAAAGAGAAACAATGTACAATTTCTTTCTATATGACTCTCAT  683

seq1  TTAGTAGGGAATAAGGAGATAGCTTTGTGTTTTGCCCATTAGTGATTCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAGGGAATAAGGAGATAGCTTTGTGTTTTGCCCATTAGTGATTCTA  733

seq1  AATAGATGGTTTAATGTTAATGTTCATGTCTGGTATTTCATGGAGGAAAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGATGGTTTAATGTTAATGTTCATGTCTGGTATTTCATGGAGGAAAG  783

seq1  CAACCTAATTGGTTCCCTTGCTCCTTTGGAGTAGAAAAAAAATGAGACGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTAATTGGTTCCCTTGCTCCTTTGGAGTAGAAAAAAAATGAGACGT  833

seq1  TTCTTGTGCAACATGAGGTGTATAAATGTATGGTGGTCTCAATTTCTGAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGTGCAACATGAGGTGTATAAATGTATGGTGGTCTCAATTTCTGAT  883

seq1  AAATTGTACTCTACATCTCAAGTGTAGCCCTTAAAGATTGTGTGTAGTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGTACTCTACATCTCAAGTGTAGCCCTTAAAGATTGTGTGTAGTGA  933

seq1  AGACATTCTATGGATTCCTAGTAAACAGTACAGTAAAAGTGGTAATGTTT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATTCTATGGATTCCTAGTAAACAGTACAGTAAAAGTGGTAATGTTT  983

seq1  GGAGAATGGAAAAGAAAGGAAAAAAGTCTAATATGAGAAAAGTATTAACT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAATGGAAAAGAAAGGAAAAAAGTCTAATATGAGAAAAGTATTAACT  1033

seq1  TAAACAGTAAACTCAACATAAGATTTTAGTCACAAGCACAACCTAATAGA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGTAAACTCAACATAAGATTTTAGTCACAAGCACAACCTAATAGA  1083

seq1  CAGCCATAGTTCATCTGAGAGTCCATGGGATAAAAAGGGAGAATTC  1145
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATAGTTCATCTGAGAGTCCATGGGATAAAAAGGGAGAATTC  1129

seq1: chr4_86240961_86241127
seq2: B6Ng01-091J01.g_108_294 (reverse)

seq1  TGGTGGCACATGCCTTTAATCCCAGCACTCGGGAGGCAGGGGCAGGTGGA  50
      ||||||| ||  |||||||| ||||||||| |||||||| ||||||  ||
seq2  TGGTGGCGCACACCTTTAATTCCAGCACTCAGGAGGCAGAGGCAGGCAGA  50

seq1  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCC  100

seq1  AGGGCTACACAGAGAAACCCTGTCTCG-----AAAAAAACAAAAA-----  140
      ||||||  |||||||||||| ||||||     ||||||| |||||     
seq2  AGGGCT--ACAGAGAAACCCAGTCTCGGGAAAAAAAAAAAAAAAAGTCTC  148

seq1  -----------CAAACAAA-CAAAAACCAAAAACCAAAA  167
                 |||||||| |||||||||||||||||||
seq2  TTAACTAAAAGCAAACAAATCAAAAACCAAAAACCAAAA  187