BAC Information

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BAC

Clone NameB6Ng01-092A09
Chromosome14 (Build37)16 (Build37)
Map Location 65,794,168 - 65,795,40332,236,251 - 32,236,366
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneMsra, Kif13b, Hmbox1, LOC100043657, D14Ertd231e, Extl3
Downstream geneFzd3, LOC668286, Fbxo16, Zfp395, Pnoc, Elp3, Gm600, Scara5, Pbk, Esco2, Ccdc25, Scara3, Clu, Gulo, Adam2, LOC100043675, Ephx2, Chrna2, Ptk2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092A09.bB6Ng01-092A09.g
ACCDH903897DH903898
length1,192227
definitionDH903897|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A09, 5' end.DH903898|Mus musculus domesticus DNA, BAC clone: B6Ng01-092A09, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(65,794,168 - 65,795,403)(32,236,251 - 32,236,366)
sequence
gaattccaggctcagagtctgtacttagttgttgagttctctagtctcaa
actcaggtagactaagcaccttatcgagacattgccccgtttcaagctcc
caggctataaaatgtattcgtctgctttacaaaatgccccgtgaactcac
taagaaatgcagagcagatgctgatctctgaattagtccctgatgatgcg
ctaatggagaaggggagaaaagggcccttcttaagtagaaagaggcactt
tacccgcacctcttacattatagaaggactttaatgcattggtctctcga
atactgagaattttaatgaaataaattcccaaacttctaagccgccaaga
gcacaggccacgcacgcaccctgttttccacaccgatcttgctcatttaa
ccccatcttgttgcatccacactccttactacttggtcaccagcctttgt
tccctggagactgtagcacctggtcctccgttcttcagggtgtacactga
cagccttatcttcaatgtcagtctcctccgctctgctttgaactctctgt
ctcatatggatccgggagggacccaccatctctagaaagaatccaaatta
aaataaaacccaagagtgttcccttactgacctctgtccccgatccacac
cgcacactttacaaaaccattgcaaactctcccaaggacatcagcttgat
acagttaccagcccagggaaaccagagcctaaagactgtggtcatgacat
aagctaagatagtcccagcatcatcaaaagactaagggcagagtcagcag
catgggaactcttggggtgtcaggaaggaaggtgctccagtttgctgccc
cgttgtaacaagtgatcaaacgccacttaagggaacaaaggttttatttc
accatactctttatagcccatcatccagggaagccaggacatggtcttga
gataggactgacgcagagaccttgagatgctgctactggcttgctccctg
atctgctcagtagctttcaatagattgcagccacctgctcagggtgtaca
accacagtggctggccttcttatatcagtggtcatcatgccacgacttgc
caaagggcatctgatggaggatctcacttaggttcttcttcaggccagtc
aggggaactgaacccagtgagtttattgctcagttcaggtca
caggacatccagggctagatggagaaactctgtcttcaaaaaaagcagga
gggctgtcgagatggctcagcaggtaagagcactgactgctcttccaaag
gtcctgagttcaaatcccagcaatcacatggtggctcacaaccacccgta
atgatatctgatgccctcttctggtgagtctgaagtcagctacagtgtat
ttgtgtataataataaagaaatcttta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr14_65794168_65795403
seq2: B6Ng01-092A09.b_38_1229

seq1  GAATTCCAGGCTCAGAGTCTGTACTTAGTTG-AGAGTTCTCTAGTCTCAA  49
      |||||||||||||||||||||||||||||||  |||||||||||||||||
seq2  GAATTCCAGGCTCAGAGTCTGTACTTAGTTGTTGAGTTCTCTAGTCTCAA  50

seq1  ACTCAGGTAGACTAAGCACCTTATCGAGACATTGCCCCGTTTCAAGCTCC  99
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGGTAGACTAAGCACCTTATCGAGACATTGCCCCGTTTCAAGCTCC  100

seq1  CAGGCTATAAAATGTATTCGTCTGCTTTACAAAATGCCCCGTGAACTCAC  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTATAAAATGTATTCGTCTGCTTTACAAAATGCCCCGTGAACTCAC  150

seq1  TAAGAAATGCAGAGCAGATGCTGATCTCTGAATTAGTCCCTGATGATGCG  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAAATGCAGAGCAGATGCTGATCTCTGAATTAGTCCCTGATGATGCG  200

seq1  CTAATGGAGAAGGGGAGAAAAGGGCCCTTCTTAAGTAGAAAGAGGCACTT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGGAGAAGGGGAGAAAAGGGCCCTTCTTAAGTAGAAAGAGGCACTT  250

seq1  TACCCGCACCTCTTACATTATAGAAGGACTTTAATGCATTGGTCTCTCGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCGCACCTCTTACATTATAGAAGGACTTTAATGCATTGGTCTCTCGA  300

seq1  ATACTGAGAATTTTAATGAAATAAATTCCCAAACTTCTAAGCCGCCAAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTGAGAATTTTAATGAAATAAATTCCCAAACTTCTAAGCCGCCAAGA  350

seq1  GCACAGGCCACGCACGCACCCTGTTTTCCACACCGATCTTGCTCATTTAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAGGCCACGCACGCACCCTGTTTTCCACACCGATCTTGCTCATTTAA  400

seq1  CCCCATCTTGTTGCATCCACACTCCTTACTACTTGGTCACCAGCCTTTGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATCTTGTTGCATCCACACTCCTTACTACTTGGTCACCAGCCTTTGT  450

seq1  TCCCTGGAGACTGTAGCACCTGGTCCTCCGTTCTTCAGGGTGTACACTGA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGGAGACTGTAGCACCTGGTCCTCCGTTCTTCAGGGTGTACACTGA  500

seq1  CAGCCTTATCTTCAATGTCAGTCTCCTCCGCTCTGCTTTGAACTCTCTGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTATCTTCAATGTCAGTCTCCTCCGCTCTGCTTTGAACTCTCTGT  550

seq1  CTCATATGGATCCGGGAGGGACCCACCATCTCTAGAAAGAATCCAAATTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGGATCCGGGAGGGACCCACCATCTCTAGAAAGAATCCAAATTA  600

seq1  AAATAAAACCCAAGAGTGTTCCCTTACTGACCTCTGTCCCCGATCCACAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAACCCAAGAGTGTTCCCTTACTGACCTCTGTCCCCGATCCACAC  650

seq1  CGCACACTTTACAAAACCATTGCAAACTCTCCCAAGGACATCAGCTTGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCACACTTTACAAAACCATTGCAAACTCTCCCAAGGACATCAGCTTGAT  700

seq1  ACAGTTACCAGCCCAGGGAAACCAGAGCCTAAAGACTGTGGTCATGACAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTACCAGCCCAGGGAAACCAGAGCCTAAAGACTGTGGTCATGACAT  750

seq1  AAGCTAAGATAGTCCCAGCATCATCAAAAGACTAAGGGCAGAGTCAGCAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGATAGTCCCAGCATCATCAAAAGACTAAGGGCAGAGTCAGCAG  800

seq1  CATGGGAACTCTTGGGGTGTCAGGAAGGAAGGTGCTCCAGTTTGCTGCCC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGGAACTCTTGGGGTGTCAGGAAGGAAGGTGCTCCAGTTTGCTGCCC  850

seq1  CGTTGTAACAAGTGATCAAACGCCACTTAAGGGAACAAAGGTTTTATTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTGTAACAAGTGATCAAACGCCACTTAAGGGAACAAAGGTTTTATTTC  900

seq1  ACCATACTCTTTATAGCCCATCATCCAGGGAAGCCAGGACATGGTCTTGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATACTCTTTATAGCCCATCATCCAGGGAAGCCAGGACATGGTCTTGA  950

seq1  GATAGGAACTGACGCAGAGACCTTGGAAGAATGCTGCTTACTGGCTTGCT  999
      |||||| ||||||||||||||||||  || ||||||| ||||||||||||
seq2  GATAGG-ACTGACGCAGAGACCTTG--AG-ATGCTGC-TACTGGCTTGCT  995

seq1  CCCCTGATCCTGCTCAGTCAGCTTTCATATAGATTGCAGGCCCACCTGCT  1049
       ||||||| ||||||||| |||||||| |||||||||||  |||||||||
seq2  -CCCTGAT-CTGCTCAGT-AGCTTTCA-ATAGATTGCAG--CCACCTGCT  1039

seq1  CAGGGGTGGTACCAACCACAGTGGGCTGGGCCCTCTTATATCAGTGGTCA  1099
      |||||   ||| |||||||||| |||| |||| |||||||||||||||| 
seq2  CAGGG--TGTA-CAACCACAGT-GGCT-GGCCTTCTTATATCAGTGGTC-  1083

seq1  ATCATGCCCACAGACTTGCCCAAAGGGCCAATCTGATGGAGGAAATTCTT  1149
      |||||| |||| |||||| |||||||||  |||||||||||||   ||| 
seq2  ATCATG-CCAC-GACTTG-CCAAAGGGC--ATCTGATGGAGGA---TCT-  1124

seq1  CAACTCAGGTTCTATCTTTTCAGGCCAAGTTCACAGTGGAGACTGACCAC  1199
        ||| |||||||   | |||||||| |||   ||| ||| ||||| | |
seq2  -CACTTAGGTTCT---TCTTCAGGCC-AGT---CAGGGGA-ACTGAAC-C  1164

seq1  CACATGTGAGTTTATTTTGCCTCACCAGTTCAGGTCA  1236
      ||   |||||||||  ||||     ||||||||||||
seq2  CA---GTGAGTTTA--TTGC----TCAGTTCAGGTCA  1192

seq1: chr16_32236251_32236366
seq2: B6Ng01-092A09.g_125_301 (reverse)

seq1  TAAAGATTTCTTTATTATTATATCTAAGTACATTGTAG------------  38
      ||||||||||||||||||||||   || |||| |||||            
seq2  TAAAGATTTCTTTATTATTATACACAAATACACTGTAGCTGACTTCAGAC  50

seq1  -------------------------------------------------T  39
                                                       |
seq2  TCACCAGAAGAGGGCATCAGATATCATTACGGGTGGTTGTGAGCCACCAT  100

seq1  GTGGTTGCTGGGATTTGAACTCAGGACCTTCGGAAGAGCAGTCAGTGCTT  89
      ||| |||||||||||||||||||||||||| |||||||||||||||||| 
seq2  GTGATTGCTGGGATTTGAACTCAGGACCTTTGGAAGAGCAGTCAGTGCTC  150

seq1  TTAACCGCTGAGCCATCTCTCCAGCCC  116
      ||| | |||||||||||||  ||||||
seq2  TTACCTGCTGAGCCATCTCGACAGCCC  177