BAC Information

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BAC

Clone NameB6Ng01-092F12
Chromosome16 (Build37)
Map Location 90,909,009 - 91,143,211
singlet/doubletdoublet
Overlap geneLOC665863, 1110004E09Rik, 4930534H18Rik, Synj1, 1810007M14Rik, 4932438H23Rik, H3f3a-ps2
Upstream geneTiam1, LOC100040496, LOC640694, LOC100040440, Sod1, Sfrs15, LOC545175, Hunk, 2610039C10Rik, Mrap, 4921511H13Rik, 4931408A02Rik
Downstream geneOlig2, Olig1, Ifnar2, Il10rb, Ifnar1, LOC665939, LOC665947, Ifngr2, Tmem50b, ORF28, Gart, Son, Donson, Cryzl1, LOC100040653, Itsn1, Atp5o, Mrps6, Slc5a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092F12.bB6Ng01-092F12.g
ACCDH904130DH904131
length1,0391,042
definitionDH904130|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F12, 5' end.DH904131|Mus musculus domesticus DNA, BAC clone: B6Ng01-092F12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,142,180 - 91,143,211)(90,909,009 - 90,910,054)
sequence
gaattcctgtcccgactttctttgatgatgcggaagtgtaagtcaaataa
acactctccttcccaagttgcttcggtcgtggtgttttagcacaacaata
tgaaaacctgaccaaggcaatgggcagtggtcaatgggcttgtccagttt
gccatgcaggcccacactactctccgttgcctctgcccttttgggtggca
tctcctctagctttgccacattcctcccaatgcccttcagttttaggacc
cctgccttgtctccatggggggtgtgtgaccactgacacctcacctcttc
cacacgcacccctgcacatacgtattccttgactacccttccctgtgttt
gttagacacctttttccttctcattcccagctggggccaagactcaccca
atatggtcacttgggatgcagaagaagatgttggaactttaattttctaa
cctcactgtttgcagttgtcttggtcttccctgtattttaaagtactggg
aacagttgatctggtagaatggcttctttgtacccttaaggagtacccta
acttatttttgtttgttggggtgtgtggttaacataggcatcctgggggc
tcctcccacccacacatcctactcatattcccagggttagaggatgcccc
gcccagcagatgccccgcccagcagatgtcctgccttgtcaccctttcat
ctactccaggcagctgatgttcaagacattgtttttttcacacaggccca
cgctaggccagagctctatttaaccaaagattgtcaccctgattctgagt
ctcttgcttttacctctgcagtgttggtaccccaggcttatttttattat
ttatttactcattcattcattcattcattcgcggtgctggacctcagagc
cagggccttgcacatataatccagctctctatcattgatctatgctctaa
cacgattttaaatctactgtgtttctaataataatcccgaactttttaat
cttgattcttgccggggttttttgtattgttttggtttt
gaattctcctccatcaccgttccacctaattcatcaaggcagggtctctt
aatcaaacccagagctcaccgattaaggctagtcttactagccaacttgc
tgtgcagactgctcagtgtatccttccaaggctggaatgacaggtggccc
caagttcaccaacatttgctgtgggttctggggacccacattctgtcctc
atgtttgcatggcaagccctccagctgtggagccttctctcagcccccag
aacccaaattcttcataatgatgttgtatagtctttcatttccctgactc
ccaaggggatggattctgctgttgttcttgctctcagagtaaccccttcc
ttagtctgtttctgcatccaacaggcctcttctccagctctaggaacaga
cactgtcaatctaacgtctctctctgtggaaccaaggagagaacgacagc
agaaggtagccctttatcactctttgtggccaatgtcactgtgagcaaag
ccacaaagagttccacaatggtatcccctgagtctctgcctccccatcac
ctacctacgacaggcatgcttacattctttctcttagctatcatttatct
ctttcacacacacacacacacacacacacacacacacacacacagagaga
gagagagagagagagagacagagacagagacagagacagagacagagaca
gagagacagagacacagagagagacagagacacagagacagagaggcaga
gacagaggcagacgcatggcgcatgcgcacactcttccctgtcccttcaa
gaatggctccacaccaggcagctgaggcatggatcagtctctagcccagc
aagtgcaataagctgttgcatctctgacctccagcagagactgcccctgt
cttctctgggcctcatgggtctgctgagctcaagaggaaatgtgaccgaa
gctcacttggatgagggctgctgctggaccaagcctgggggcatggggca
aacgcctacgtggtgcgcctagggagctctggagcctctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_91142180_91143211
seq2: B6Ng01-092F12.b_59_1085 (reverse)

seq1  -AAAACAAAA-AACAAAAAAAACACTGCAAAGAATCAAGGATTAAAAAAG  48
       ||| ||||| || | ||||||| | |  ||||||||| |||| ||||||
seq2  AAAACCAAAACAATACAAAAAACCCCGGCAAGAATCAA-GATT-AAAAAG  48

seq1  TTCGGGA-TATTATTTAGAAACACAGTTAGAATTTAAAATCGATGTTAGG  97
      ||||||| ||||| |||||||||||| ||| ||||||||||| ||||| |
seq2  TTCGGGATTATTA-TTAGAAACACAG-TAG-ATTTAAAATCG-TGTTA-G  93

seq1  AGCATAGATCAATGATAGAGAGCTTGCCTTATATGTGCAAGGCCCTGGCT  147
      ||||||||||||||||||||||| ||  ||||||||||||||||||||||
seq2  AGCATAGATCAATGATAGAGAGC-TGGATTATATGTGCAAGGCCCTGGCT  142

seq1  CTGAGGTCCAGCACCGCGAATGAATGAATGAATGAATGAGTAAATAAATA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGTCCAGCACCGCGAATGAATGAATGAATGAATGAGTAAATAAATA  192

seq1  ATAAAAATAAGCCTGGGGTACCAACACTGCAGAGGTAAAAGCAAGAGACT  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAATAAGCCTGGGGTACCAACACTGCAGAGGTAAAAGCAAGAGACT  242

seq1  CAGAATCAGGGTGACAATCTTTGGTTAAATAGAGCTCTGGCCTAGCGTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATCAGGGTGACAATCTTTGGTTAAATAGAGCTCTGGCCTAGCGTGG  292

seq1  GCCTGTGTGAAAAAAACAATGTCTTGAACATCAGCTGCCTGGAGTAGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGAAAAAAACAATGTCTTGAACATCAGCTGCCTGGAGTAGATG  342

seq1  AAAGGGTGACAAGGCAGGACATCTGCTGGGCGGGGCATCTGCTGGGCGGG  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTGACAAGGCAGGACATCTGCTGGGCGGGGCATCTGCTGGGCGGG  392

seq1  GCATCCTCTAACCCTGGGAATATGAGTAGGATGTGTGGGTGGGAGGAGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCCTCTAACCCTGGGAATATGAGTAGGATGTGTGGGTGGGAGGAGCC  442

seq1  CCCAGGATGCCTATGTTAACCACACACCCCAACAAACAAAAATAAGTTAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATGCCTATGTTAACCACACACCCCAACAAACAAAAATAAGTTAG  492

seq1  GGTACTCCTTAAGGGTACAAAGAAGCCATTCTACCAGATCAACTGTTCCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTCCTTAAGGGTACAAAGAAGCCATTCTACCAGATCAACTGTTCCC  542

seq1  AGTACTTTAAAATACAGGGAAGACCAAGACAACTGCAAACAGTGAGGTTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACTTTAAAATACAGGGAAGACCAAGACAACTGCAAACAGTGAGGTTA  592

seq1  GAAAATTAAAGTTCCAACATCTTCTTCTGCATCCCAAGTGACCATATTGG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATTAAAGTTCCAACATCTTCTTCTGCATCCCAAGTGACCATATTGG  642

seq1  GTGAGTCTTGGCCCCAGCTGGGAATGAGAAGGAAAAAGGTGTCTAACAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTCTTGGCCCCAGCTGGGAATGAGAAGGAAAAAGGTGTCTAACAAA  692

seq1  CACAGGGAAGGGTAGTCAAGGAATACGTATGTGCAGGGGTGCGTGTGGAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGGAAGGGTAGTCAAGGAATACGTATGTGCAGGGGTGCGTGTGGAA  742

seq1  GAGGTGAGGTGTCAGTGGTCACACACCCCCCATGGAGACAAGGCAGGGGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGGTGTCAGTGGTCACACACCCCCCATGGAGACAAGGCAGGGGT  792

seq1  CCTAAAACTGAAGGGCATTGGGAGGAATGTGGCAAAGCTAGAGGAGATGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACTGAAGGGCATTGGGAGGAATGTGGCAAAGCTAGAGGAGATGC  842

seq1  CACCCAAAAGGGCAGAGGCAACGGAGAGTAGTGTGGGCCTGCATGGCAAA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCAAAAGGGCAGAGGCAACGGAGAGTAGTGTGGGCCTGCATGGCAAA  892

seq1  CTGGACAAGCCCATTGACCACTGCCCATTGCCTTGGTCAGGTTTTCATAT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGACAAGCCCATTGACCACTGCCCATTGCCTTGGTCAGGTTTTCATAT  942

seq1  TGTTGTGCTAAAACACCACGACCGAAGCAACTTGGGAAGGAGAGTGTTTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTGCTAAAACACCACGACCGAAGCAACTTGGGAAGGAGAGTGTTTA  992

seq1  TTTGACTTACACTTCCGCATCATCAAAGAAAGTCG  1032
      |||||||||||||||||||||||||||||||||||
seq2  TTTGACTTACACTTCCGCATCATCAAAGAAAGTCG  1027

seq1: chr16_90909009_90910054
seq2: B6Ng01-092F12.g_68_1109

seq1  GAATTCTCCTCCATCACCGTTCCACCTAATTCATCAAGGCAGGGTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTCCATCACCGTTCCACCTAATTCATCAAGGCAGGGTCTCTT  50

seq1  AATCAAACCCAGAGCTCACCGATTAAGGCTAGTCTTACTAGCCAACTTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAAACCCAGAGCTCACCGATTAAGGCTAGTCTTACTAGCCAACTTGC  100

seq1  TGTGCAGACTGCTCAGTGTATCCTTCCAAGGCTGGAATGACAGGTGGCCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCAGACTGCTCAGTGTATCCTTCCAAGGCTGGAATGACAGGTGGCCC  150

seq1  CAAGTTCACCAACATTTGCTGTGGGTTCTGGGGACCCACATTCTGTCCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTCACCAACATTTGCTGTGGGTTCTGGGGACCCACATTCTGTCCTC  200

seq1  ATGTTTGCATGGCAAGCCCTCCAGCTGTGGAGCCTTCTCTCAGCCCCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGCATGGCAAGCCCTCCAGCTGTGGAGCCTTCTCTCAGCCCCCAG  250

seq1  AACCCAAATTCTTCATAATGATGTTGTATAGTCTTTCATTTCCCTGACTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAATTCTTCATAATGATGTTGTATAGTCTTTCATTTCCCTGACTC  300

seq1  CCAAGGGGATGGATTCTGCTGTTGTTCTTGCTCTCAGAGTAACCCCTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGGGGATGGATTCTGCTGTTGTTCTTGCTCTCAGAGTAACCCCTTCC  350

seq1  TTAGTCTGTTTCTGCATCCAACAGGCCTCTTCTCCAGCTCTAGGAACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTGTTTCTGCATCCAACAGGCCTCTTCTCCAGCTCTAGGAACAGA  400

seq1  CACTGTCAATCTAACGTCTCTCTCTGTGGAACCAAGGAGAGAACGACAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGTCAATCTAACGTCTCTCTCTGTGGAACCAAGGAGAGAACGACAGC  450

seq1  AGAAGGTAGCCCTTTATCACTCTTTGTGGCCAATGTCACTGTGAGCAAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGTAGCCCTTTATCACTCTTTGTGGCCAATGTCACTGTGAGCAAAG  500

seq1  CCACAAAGAGTTCCACAATGGTATCCCCTGAGTCTCTGCCTCCCCATCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAAGAGTTCCACAATGGTATCCCCTGAGTCTCTGCCTCCCCATCAC  550

seq1  CTACCTACGACAGGCATGCTTACATTCTTTCTCTTAGCTATCATTTATCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACCTACGACAGGCATGCTTACATTCTTTCTCTTAGCTATCATTTATCT  600

seq1  CTTTCACACACACACACACACACACACACACACACACACACACAGAGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCACACACACACACACACACACACACACACACACACACACAGAGAGA  650

seq1  GAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGAGACAGAGACAGAGACAGAGACAGAGACAGAGACA  700

seq1  GAGAGACAGAGACACAGAGAGAGACAGAGACACAGAGACAGAGAGGCAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACAGAGACACAGAGAGAGACAGAGACACAGAGACAGAGAGGCAGA  750

seq1  GACAGAGGCAGACGCATGGCGCATGCGCACACTCTTCCCTGTCCCTTCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  GACAGAGGCAGACGCATGGCGCATGCGCACACTCTTCCCTGTCCCTTCAA  800

seq1  GAATGGCTCCACACCAGGCAGCTGAGGCATGGATCAGTCTCTTAGCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GAATGGCTCCACACCAGGCAGCTGAGGCATGGATCAGTCTC-TAGCCCAG  849

seq1  CAAGTGCAATAAGCTGTTTGCATCTTCTGACCTCCAGCAGAGACTGCCCC  900
      |||||||||||||||| ||||||| |||||||||||||||||||||||||
seq2  CAAGTGCAATAAGCTG-TTGCATC-TCTGACCTCCAGCAGAGACTGCCCC  897

seq1  TGTCTTCTCTGGGCCTCATGGGTCCTGCTGAGCTCAAGAGGAAATGTGAC  950
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGTCTTCTCTGGGCCTCATGGGT-CTGCTGAGCTCAAGAGGAAATGTGAC  946

seq1  CGAAGCTCACTTGGATGAGGGCTGGCTGCTGGACCAGGCTGTGGGGCATG  1000
      ||||||||||||||||||||||| |||||||||||| ||   ||||||||
seq2  CGAAGCTCACTTGGATGAGGGCT-GCTGCTGGACCAAGCCTGGGGGCATG  995

seq1  GGGCAAACGCCTACGTGGTGCGCCCAGGGAGCTCT-GAGCCTCTGCC  1046
      |||||||||||||||||||||||| |||||||||| |||||||||||
seq2  GGGCAAACGCCTACGTGGTGCGCCTAGGGAGCTCTGGAGCCTCTGCC  1042