BAC Information

Click to search

BAC

Clone NameB6Ng01-093F02
Chromosome16 (Build37)
Map Location 29,949,489 - 30,111,793
singlet/doubletdoublet
Overlap geneGm1968, LOC100043102, 9030404E10Rik, Hes1
Upstream geneEG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneEG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653, Centb2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093F02.bB6Ng01-093F02.g
ACCDH904839DH904840
length1,1761,106
definitionDH904839|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F02, 5' end.DH904840|Mus musculus domesticus DNA, BAC clone: B6Ng01-093F02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,110,599 - 30,111,793)(29,949,489 - 29,950,612)
sequence
gaattcactgtctgcatgttttcttttggcactcatcccaccactggtgt
tctttgtgtgtcattttcctagactgatcatgagacctccatgtcagaat
agggtcttattcagccttgtgccttcttaacacagggcctggcacatgaa
agatgtcaccaaatactgtccaaagagttgagatgtggatgaagtgatag
gaatagactcggacaccctgtgcttaagggggactttgccaggaaacaaa
gattctgaacagcctatctgaaccctttttccaggagctctttcctgtgg
tgccatttctggttgtggactaagggaaatttacaagtctccatggtgat
tggagatctctgagttggtgctaactttccagcaggcaagtggtgaagag
agctggtatgactacctgcttagtcagaagtgtcaggatactctaggcag
gtggctcctacatgatctgagccactatgctgtcaagacaattcccaagt
gggaagctcagccccctgtagctggtctttgctactttgtggttcttctt
tcttctaccctttcccatccttccagccccttaacagtagataagagaga
gaaaaggatagagaggaaaggaaagagatccctgaataaagtcagggatg
ggaaagggagcaatattatctttagactgcttcctgctgattaggtccat
caagtgggctgtggggtaaccaaagaggcatccagaagacagaacatcat
aattagacttgatgtttaaaaagggatgatggctaagctgcaaggatgga
gataccaaagagagttgaatttagggagaccaattaacaggctttgggga
gtctctaaaagaggaacgttagtgtagttaccaaggaccaacctcagctt
ggagagggttcctgaggagagatgtttggagcagcaaaagataactcaag
tcaatcatgagtacaaactgacagcttcatgttctgcttgagctggctct
gcagaagctacgtagatagatgagcttctgcagaccaaagcctaagtctt
tatttacttatcattcatcataacccaggttcccttttgatatccacaaa
tcagatttataacctagtccctgaatctaagaaagataggcagacatatt
tataaatcgcaatgaactctgagatc
gaattcctgctctggggctggtgagatggctcagggggtaagagcactga
ctgttctgtcaaaggtcctgagttcaaatcccagcaaccacatggtggct
cacaaccatctgtacagctacagtgtactcatatacataaaataaaaata
aataaatacatcttaaaaaaaaaaaaaaaaaaagaagaagaagaagccgg
gcatggcggcacacgcctttaatcccagcactcgggaggctgaggatttc
tgagttcaaggccagcctggtctacaaagtgagttccaggacagccaggg
ctatacagagaaaccctgcctcaaaaaaccaaaaaaaaaaaaaaaaaaaa
aaaaaaaagtgaaaattcctgctctggagagctggagagatggctcagtg
gttaagagcagtggctgctcttccagaggacctgggttcaactgtcagca
tccacatggcagctcacaactgtctgtaactcacaccctcacacagaaat
atgtgcaggcaaaacacaagtgcacatgaaataataataattaataataa
taataacaataacaataaaggattcctgctctggaagataaggaaacgct
gagcctgagttttcctaatctgtgaagaggaaataccactgccccataaa
cagacttcatgtggtgggggtgctgatatagatctgtgctattagaaccc
attggttctctgcctagcagacagagaatattaatacatgtaatattaat
acaattccttttaccatcatctgccacaaccattccctattctgctgcac
gggatgtaaattcctttaagagaagccgtcgctgtctgtgaaattcccgt
agcaaaccccttctggtaagccagcactatacgatttcatacttgcctgc
tggaaacataacgagtccccacggagacaaagggaaagcagagcagctca
gcaggcttctcagaagtaatatgctgggcaggattgcacaacgaataccc
ctgtgctttaaaaggcaatgtacttgcaggcatcctctctctctcagagt
aagatgtacggttggaaattagcttctgaagcagagtcaggacaaagctt
tgactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30110599_30111793
seq2: B6Ng01-093F02.b_45_1220 (reverse)

seq1  GATCTCTGAGTTCATTTGCGACATTATAAAATATGTACTTGCTATCTCTT  50
      |||||| ||||||| ||||||  |||| |||||||| ||  |||  ||||
seq2  GATCTCAGAGTTCA-TTGCGA-TTTAT-AAATATGT-CTGCCTA--TCTT  44

seq1  TCTAAGAATCTAGGGACTAAGGTTATAAAATGCTGATTTGTGGGATAATC  100
      ||| ||| || ||||||| ||||||||||   ||||||||| |||| |||
seq2  TCTTAGATTC-AGGGACT-AGGTTATAAA--TCTGATTTGT-GGAT-ATC  88

seq1  AAAAGGGAACCTGGGTTAATGATTGAATTGATAAGTAAATAAAAGAC-TA  149
      ||||||||||||||||| |||| |||| |||||||||||| |||||| ||
seq2  AAAAGGGAACCTGGGTT-ATGA-TGAA-TGATAAGTAAAT-AAAGACTTA  134

seq1  GGCTTTGGTCTGCAAGAGCTCATCTATCTACGTAGCTGTCTGCAGAGCCA  199
      ||||||||||||||  ||||||||||||||||||||| ||||||||||||
seq2  GGCTTTGGTCTGCAGAAGCTCATCTATCTACGTAGCT-TCTGCAGAGCCA  183

seq1  GCTCAAGCAGAACATGGAGCTGTCAGTTTGTACTCATGATTGACTTTGAG  249
      |||||||||||||||| ||||||||||||||||||||||||||| |||||
seq2  GCTCAAGCAGAACATGAAGCTGTCAGTTTGTACTCATGATTGAC-TTGAG  232

seq1  TTATTCTTTTGCTGCTCCAAACATCTCTTCCTCAGGAACCCTCTCCAAGC  299
      ||| ||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TTA-TCTTTTGCTGCTCCAAACATCTC-TCCTCAGGAACCCTCTCCAAGC  280

seq1  TGAGGTTGGTCCTTGGTAACTACACTAACGTTCCTCTTTTAGAGACTCCC  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGGTCCTTGGTAACTACACTAACGTTCCTCTTTTAGAGACTCCC  330

seq1  CAAAGCCTGTTAATTGGTCTCCCTAAATTCAACTCTCTTTGGTATCTCCA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGCCTGTTAATTGGTCTCCCTAAATTCAACTCTCTTTGGTATCTCCA  380

seq1  TCCTTGCAGCTTAGCCATCATCCCTTTTTAAACATCAAGTCTAATTATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCAGCTTAGCCATCATCCCTTTTTAAACATCAAGTCTAATTATGA  430

seq1  TGTTCTGTCTTCTGGATGCCTCTTTGGTTACCCCACAGCCCACTTGATGG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGTCTTCTGGATGCCTCTTTGGTTACCCCACAGCCCACTTGATGG  480

seq1  ACCTAATCAGCAGGAAGCAGTCTAAAGATAATATTGCTCCCTTTCCCATC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAATCAGCAGGAAGCAGTCTAAAGATAATATTGCTCCCTTTCCCATC  530

seq1  CCTGACTTTATTCAGGGATCTCTTTCCTTTCCTCTCTATCCTTTTCTCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACTTTATTCAGGGATCTCTTTCCTTTCCTCTCTATCCTTTTCTCTC  580

seq1  TCTTATCTACTGTTAAGGGGCTGGAAGGATGGGAAAGGGTAGAAGAAAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATCTACTGTTAAGGGGCTGGAAGGATGGGAAAGGGTAGAAGAAAGA  630

seq1  AGAACCACAAAGTAGCAAAGACCAGCTACAGGGGGCTGAGCTTCCCACTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCACAAAGTAGCAAAGACCAGCTACAGGGGGCTGAGCTTCCCACTT  680

seq1  GGGAATTGTCTTGACAGCATAGTGGCTCAGATCATGTAGGAGCCACCTGC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAATTGTCTTGACAGCATAGTGGCTCAGATCATGTAGGAGCCACCTGC  730

seq1  CTAGAGTATCCTGACACTTCTGACTAAGCAGGTAGTCATACCAGCTCTCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTATCCTGACACTTCTGACTAAGCAGGTAGTCATACCAGCTCTCT  780

seq1  TCACCACTTGCCTGCTGGAAAGTTAGCACCAACTCAGAGATCTCCAATCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCACTTGCCTGCTGGAAAGTTAGCACCAACTCAGAGATCTCCAATCA  830

seq1  CCATGGAGACTTGTAAATTTCCCTTAGTCCACAACCAGAAATGGCACCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGGAGACTTGTAAATTTCCCTTAGTCCACAACCAGAAATGGCACCAC  880

seq1  AGGAAAGAGCTCCTGGAAAAAGGGTTCAGATAGGCTGTTCAGAATCTTTG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAGCTCCTGGAAAAAGGGTTCAGATAGGCTGTTCAGAATCTTTG  930

seq1  TTTCCTGGCAAAGTCCCCCTTAAGCACAGGGTGTCCGAGTCTATTCCTAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGGCAAAGTCCCCCTTAAGCACAGGGTGTCCGAGTCTATTCCTAT  980

seq1  CACTTCATCCACATCTCAACTCTTTGGACAGTATTTGGTGACATCTTTCA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTCATCCACATCTCAACTCTTTGGACAGTATTTGGTGACATCTTTCA  1030

seq1  TGTGCCAGGCCCTGTGTTAAGAAGGCACAAGGCTGAATAAGACCCTATTC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCAGGCCCTGTGTTAAGAAGGCACAAGGCTGAATAAGACCCTATTC  1080

seq1  TGACATGGAGGTCTCATGATCAGTCTAGGAAAATGACACACAAAGAACAC  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGGAGGTCTCATGATCAGTCTAGGAAAATGACACACAAAGAACAC  1130

seq1  CAGTGGTGGGATGAGTGCCAAAAGAAAACATGCAGACAGTGAATTC  1195
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGTGGGATGAGTGCCAAAAGAAAACATGCAGACAGTGAATTC  1176

seq1: chr16_29949489_29950612
seq2: B6Ng01-093F02.g_67_1172

seq1  GAATTCCTGCTCTGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACTGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCTCTGGGGCTGGTGAGATGGCTCAGGGGGTAAGAGCACTGA  50

seq1  CTGTTCTGTCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTCTGTCAAAGGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCT  100

seq1  CACAACCATCTGTACAGCTACAGTGTACTCATATACATAAAATAAAAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACCATCTGTACAGCTACAGTGTACTCATATACATAAAATAAAAATA  150

seq1  AATAAATACATCTTAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGCCGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATACATCTTAAAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGCCGG  200

seq1  GCATGGCGGCACACGCCTTTAATCCCAGCACTCGGGAGGCTGAGGATTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGCGGCACACGCCTTTAATCCCAGCACTCGGGAGGCTGAGGATTTC  250

seq1  TGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCAAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGG  300

seq1  CTATACAGAGAAACCCTGCCTCAAAAAACCAAAAAAAAAAAAAAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACAGAGAAACCCTGCCTCAAAAAACCAAAAAAAAAAAAAAAAAAAA  350

seq1  AAAAAAAAGTGAAAATTCCTGCTCTGGAGAGCTGGAGAGATGGCTCAGTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAGTGAAAATTCCTGCTCTGGAGAGCTGGAGAGATGGCTCAGTG  400

seq1  GTTAAGAGCAGTGGCTGCTCTTCCAGAGGACCTGGGTTCAACTGTCAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGAGCAGTGGCTGCTCTTCCAGAGGACCTGGGTTCAACTGTCAGCA  450

seq1  TCCACATGGCAGCTCACAACTGTCTGTAACTCACACCCTCACACAGAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATGGCAGCTCACAACTGTCTGTAACTCACACCCTCACACAGAAAT  500

seq1  ATGTGCAGGCAAAACACAAGTGCACATGAAATAATAATAATTAATAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCAGGCAAAACACAAGTGCACATGAAATAATAATAATTAATAATAA  550

seq1  TAATAACAATAACAATAAAGGATTCCTGCTCTGGAAGATAAGGAAACGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAACAATAACAATAAAGGATTCCTGCTCTGGAAGATAAGGAAACGCT  600

seq1  GAGCCTGAGTTTTCCTAATCTGTGAAGAGGAAATACCACTGCCCCATAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTGAGTTTTCCTAATCTGTGAAGAGGAAATACCACTGCCCCATAAA  650

seq1  CAGACTTCATGTGGTGGGGGTGCTGATATAGATCTGTGCTATTAGAACCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACTTCATGTGGTGGGGGTGCTGATATAGATCTGTGCTATTAGAACCC  700

seq1  ATTGGTTCTCTGCCTAGCAGACAGAGAATATTAATACATGTAATATTAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTCTCTGCCTAGCAGACAGAGAATATTAATACATGTAATATTAAT  750

seq1  ACAATTCCTTTTACCATCATCTGCCACAACCATTCCCTATTCTGCTGCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCCTTTTACCATCATCTGCCACAACCATTCCCTATTCTGCTGCAC  800

seq1  GGGATGTAAATTCCTTTAAGAGAAGCCGTCGCTGTCTGTGAAATTCCCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATGTAAATTCCTTTAAGAGAAGCCGTCGCTGTCTGTGAAATTCCCGT  850

seq1  AGCAAA-CCCTTCTGGTAAGCCAGCACTATACGATTTCATACTTGCCTGC  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAACCCCTTCTGGTAAGCCAGCACTATACGATTTCATACTTGCCTGC  900

seq1  TGGAAACATAACGAGTCCCCACGGAGACCAAAGGGAAAGCAGGAGGCAGC  949
      ||||||||||||||||||||||||||| ||||||||||||||   |||||
seq2  TGGAAACATAACGAGTCCCCACGGAGA-CAAAGGGAAAGCAG--AGCAGC  947

seq1  TCAGCAGGC-TCTCAGAAGGTAATAATTGCTGGGGCAGGAATGCACCAAA  998
      ||||||||| |||||||| ||||||  |||| |||||||| |||||  ||
seq2  TCAGCAGGCTTCTCAGAA-GTAATA--TGCT-GGGCAGGATTGCAC--AA  991

seq1  CG-ATACCCCTGTGGCTTTAAAAGGCAATGTAACTTGCCCAAGCATCCTC  1047
      || |||||||||| ||||||||||||||||| |||||  || ||||||| 
seq2  CGAATACCCCTGT-GCTTTAAAAGGCAATGT-ACTTG--CAGGCATCCT-  1036

seq1  CTCTCTCCCAGAGTAGATTGTAACGGTAGAGAAATTAGCTTCCTGAGAGC  1097
      ||||||| |||||||   ||| ||||| | ||||||||||| |||| |||
seq2  CTCTCTCTCAGAGTAAGATGT-ACGGTTG-GAAATTAGCTT-CTGA-AGC  1082

seq1  AAGAGTCAGGGACAAAGCTTTGGACTG  1124
       ||||||| |||||||||||| |||||
seq2  -AGAGTCA-GGACAAAGCTTT-GACTG  1106