BAC Information

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BAC

Clone NameB6Ng01-093J07
Chromosome16 (Build37)
Map Location 4,502,883 - 4,724,026
singlet/doubletdoublet
Overlap geneSrl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1
Upstream geneLOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12, Dnase1, Trap1, Crebbp, EG436332, Adcy9, EG620313
Downstream geneHmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl, Sec14l5, Nagpa, AU021092, Alg1, 5730409G15Rik, LOC100042436
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093J07.bB6Ng01-093J07.g
ACCDH905030DH905031
length1,045869
definitionDH905030|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J07, 5' end.DH905031|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,722,971 - 4,724,026)(4,502,883 - 4,503,747)
sequence
gaattcaagatgaccttacaaagatgtgcacctaggctaaaagagaagct
cttttcctcgtggcctcgcagaaggatggagatcagtgctaagaggcaag
gttgattatagtgttggttcagagtctcagaccctaagaccctgaagact
tgacagttctgtgcccagggccttgcagtctttcctctctggttccctca
gtctcagctctttgctctttcttgtctctctgcatccactgtccttccct
tttttttttttaagatttatttattattatatataagtactgtagctgtt
ttcagatgcaccagaacagggcgtcagatctcattacggatggttgttag
ccaccatgtggttgctgggatttgaactcaggaccttcggaagagcagta
ggtgctcttaaccactgagccatctctccagcccctccactgtccttcct
atgctggtttttcttcatctgttcaacttccttttctgatgtcaaatagt
tggctgccttgacttggtggttctacacaccacagagctgcctcttgagt
cacccattgtaggtctctcttctcctcagaggtcgctggccactagttca
tgaaggcagaggaagcaagagcagaaagcagggttcagagggctgtgagg
atgacggacttgcagggacacggtcagtgagacagctctactttactctt
ccaggggtagggtatataaggcttttagggtatgggtggacagggctgat
tggtcctaaacacattacctacttaccatatgggcaggagtggtggattg
gttataacacagcacccagttatcattcaggtgggaaactagagtggaac
tcgtgtactgaggcatccagagttttgtagagagctctgctcaggtcaca
acccagataagtcagcatctgtgctcagagacacttctctagtaaagtag
tcacaaacagaagctcctcggaggaggaagtctccattttgcaggagctc
aaaaagctatcagatatggcaactgtgaccttaagagcaggttct
gaattcttagcccacctacatcttctccctttgaaaaagatcaaagactt
caacacacttgctttttacctataaagtacacagaactgacataataatt
ttgttttccacctcatacctagttcctatgaatatctggtttgagagata
tacagagaaattgctataaatcctctaaccattggcagatatgtagggct
tgtggtagatgccagggggattcataatgtaaatgatgtttgtttatttt
tcgtttgtgggtgattagttggctagttgggtttcttatttttgtttatt
tgtctttgaaataagctctcagatagtgtggtgtggccttcaaactcatt
atgtggccagggctggtcttaagctccgaatcctaagcctctatctccca
agtgctaagatcacaggcatacatcaccaggcccagacaattggtttttg
agtttttgtgaggttttttgtttgttgtcttttgtaacagggtttcttta
tctatatcaccctggatgtcctggaactcacagagatcttcctgtacctc
ccaggtactgggatcaaaggcattgtcagcactgcccagctaattgattt
tttaagccaaggttgtgctatatagttctgggtggcttggtactatattt
aactcagcctggcctcaaaccacagcagtctttgtgctttagcctaagtg
atgggtattaagaggatgtgttaccacacctgacttgcgcactctttttg
aaagatgagtatctctagggggaagacatcatcagtccttagctgggagt
gtggctcagatgggtagagttctggcccagcacacacaaagccctaggtt
taattccccaggactgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4722971_4724026
seq2: B6Ng01-093J07.b_50_1094 (reverse)

seq1  AGAACCCTGCTCTTAAGGTCACAGTTTGCCATATCTGATTAGCTCTCTGA  50
      |||| ||||||||||||||||||| ||||||||||||| ||||| | |||
seq2  AGAA-CCTGCTCTTAAGGTCACAG-TTGCCATATCTGA-TAGCTTTTTGA  47

seq1  GCTCCCTGCAAAATGGAGGACTTCCTTCCTCCGAGGAGCTTCCTGTTCTG  100
      ||| ||||||||||||| ||||||| ||||||||||||||| ||||| ||
seq2  GCT-CCTGCAAAATGGA-GACTTCC-TCCTCCGAGGAGCTT-CTGTT-TG  92

seq1  TGACTAACCTTACTTAGAG-AGTGTCTCTGAGCACAGATGCCTGACTTTA  149
      ||||| || |||| ||||| |||||||||||||||||||| ||||| |||
seq2  TGACT-ACTTTAC-TAGAGAAGTGTCTCTGAGCACAGATG-CTGAC-TTA  138

seq1  TCTGGGTTGTGACCCTGAGCAGAGCTCTCTAC-AAACTCTGGATGCCTCA  198
      |||||||||||| ||||||||||||||||||| |||||||||||||||||
seq2  TCTGGGTTGTGA-CCTGAGCAGAGCTCTCTACAAAACTCTGGATGCCTCA  187

seq1  GTACACGAGTTCCACTCTAGTTTCCCACCTGAATGATAACTGGGTGCTGT  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACGAGTTCCACTCTAGTTTCCCACCTGAATGATAACTGGGTGCTGT  237

seq1  GTTATAACCAATCCACCACTCCTGCCCATATGGTAAGTAGGTAATGTGTT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATAACCAATCCACCACTCCTGCCCATATGGTAAGTAGGTAATGTGTT  287

seq1  TAGGACCAATCAGCCCTGTCCACCCATACCCTAAAAGCCTTATATACCCT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACCAATCAGCCCTGTCCACCCATACCCTAAAAGCCTTATATACCCT  337

seq1  ACCCCTGGAAGAGTAAAGTAGAGCTGTCTCACTGACCGTGTCCCTGCAAG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGGAAGAGTAAAGTAGAGCTGTCTCACTGACCGTGTCCCTGCAAG  387

seq1  TCCGTCATCCTCACAGCCCTCTGAACCCTGCTTTCTGCTCTTGCTTCCTC  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGTCATCCTCACAGCCCTCTGAACCCTGCTTTCTGCTCTTGCTTCCTC  437

seq1  TGCCTTCATGAACTAGTGGCCAGCGACCTCTGAGGAGAAGAGAGACCTAC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTCATGAACTAGTGGCCAGCGACCTCTGAGGAGAAGAGAGACCTAC  487

seq1  AATGGGTGACTCAAGAGGCAGCTCTGTGGTGTGTAGAACCACCAAGTCAA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGTGACTCAAGAGGCAGCTCTGTGGTGTGTAGAACCACCAAGTCAA  537

seq1  GGCAGCCAACTATTTGACATCAGAAAAGGAAGTTGAACAGATGAAGAAAA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCCAACTATTTGACATCAGAAAAGGAAGTTGAACAGATGAAGAAAA  587

seq1  ACCAGCATAGGAAGGACAGTGGAGGGGCTGGAGAGATGGCTCAGTGGTTA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGCATAGGAAGGACAGTGGAGGGGCTGGAGAGATGGCTCAGTGGTTA  637

seq1  AGAGCACCTACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCACCTACTGCTCTTCCGAAGGTCCTGAGTTCAAATCCCAGCAACCA  687

seq1  CATGGTGGCTAACAACCATCCGTAATGAGATCTGACGCCCTGTTCTGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGCTAACAACCATCCGTAATGAGATCTGACGCCCTGTTCTGGTG  737

seq1  CATCTGAAAACAGCTACAGTACTTATATATAATAATAAATAAATCTTAAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTGAAAACAGCTACAGTACTTATATATAATAATAAATAAATCTTAAA  787

seq1  AAAAAAAAAGGGAAGGACAGTGGATGCAGAGAGACAAGAAAGAGCAAAGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAGGGAAGGACAGTGGATGCAGAGAGACAAGAAAGAGCAAAGA  837

seq1  GCTGAGACTGAGGGAACCAGAGAGGAAAGACTGCAAGGCCCTGGGCACAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGACTGAGGGAACCAGAGAGGAAAGACTGCAAGGCCCTGGGCACAG  887

seq1  AACTGTCAAGTCTTCAGGGTCTTAGGGTCTGAGACTCTGAACCAACACTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCAAGTCTTCAGGGTCTTAGGGTCTGAGACTCTGAACCAACACTA  937

seq1  TAATCAACCTTGCCTCTTAGCACTGATCTCCATCCTTCTGCGAGGCCACG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACCTTGCCTCTTAGCACTGATCTCCATCCTTCTGCGAGGCCACG  987

seq1  AGGAAAAGAGCTTCTCTTTTAGCCTAGGTGCACATCTTTGTAAGGTCATC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAGAGCTTCTCTTTTAGCCTAGGTGCACATCTTTGTAAGGTCATC  1037

seq1  TTGAATTC  1056
      ||||||||
seq2  TTGAATTC  1045

seq1: chr16_4502883_4503747
seq2: B6Ng01-093J07.g_68_936

seq1  GAATTCTTAGCCCACCTACATCTTCTCCCTTTGAAAAAGATCAAAGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGCCCACCTACATCTTCTCCCTTTGAAAAAGATCAAAGACTT  50

seq1  CAACACACTTGCTTTTTACCTATAAAGTACACAGAACTGACATAATAATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACACACTTGCTTTTTACCTATAAAGTACACAGAACTGACATAATAATT  100

seq1  TTGTTTTCCACCTCATACCTAGTTCCTATGAATATCTGGTTTGAGAGATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCACCTCATACCTAGTTCCTATGAATATCTGGTTTGAGAGATA  150

seq1  TACAGAGAAATTGCTATAAATCCTCTAACCATTGGCAGATATGTAGGGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAGAAATTGCTATAAATCCTCTAACCATTGGCAGATATGTAGGGCT  200

seq1  TGTGGTAGATGCCAGGGGGATTCATAATGTAAATGATGTTTGTTTATTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGTAGATGCCAGGGGGATTCATAATGTAAATGATGTTTGTTTATTTT  250

seq1  TCGTTTGTGGGTGATTAGTTGGCTAGTTGGGTTTCTTATTTTTGTTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTGTGGGTGATTAGTTGGCTAGTTGGGTTTCTTATTTTTGTTTATT  300

seq1  TGTCTTTGAAATAAGCTCTCAGATAGTGTGGTGTGGCCTTCAAACTCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTTGAAATAAGCTCTCAGATAGTGTGGTGTGGCCTTCAAACTCATT  350

seq1  ATGTGGCCAGGGCTGGTCTTAAGCTCCGAATCCTAAGCCTCTATCTCCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGGCCAGGGCTGGTCTTAAGCTCCGAATCCTAAGCCTCTATCTCCCA  400

seq1  AGTGCTAAGATCACAGGCATACATCACCAGGCCCAGACAATTGGTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTAAGATCACAGGCATACATCACCAGGCCCAGACAATTGGTTTTTG  450

seq1  AGTTTTTGTGAGGTTTTTTGTTTGTTGTCTTTTGTAACAGGGTTTCTTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTGTGAGGTTTTTTGTTTGTTGTCTTTTGTAACAGGGTTTCTTTA  500

seq1  TCTATATCACCCTGGATGTCCTGGAACTCACAGAGATCTTCCTGTACCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATCACCCTGGATGTCCTGGAACTCACAGAGATCTTCCTGTACCTC  550

seq1  CCAGGTACTGGGATCAAAGGCATTGTCAGCACTGCCCAGCTAATTGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGTACTGGGATCAAAGGCATTGTCAGCACTGCCCAGCTAATTGATTT  600

seq1  TTTAAGCCAAGGTTGTGCTATATAGTTCTGGGTGGCTTGGTACTATATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCCAAGGTTGTGCTATATAGTTCTGGGTGGCTTGGTACTATATTT  650

seq1  AACTCAGCCTGGCCTCAAACCACAGCAGTCTTTGTGCTTTAGCCTAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCAGCCTGGCCTCAAACCACAGCAGTCTTTGTGCTTTAGCCTAAGTG  700

seq1  AT-GGTATTAAGAGGATGTGTTACCACACCTGACTTGCGCACTCATTTTG  749
      || ||||||||||||||||||||||||||||||||||||||||| |||||
seq2  ATGGGTATTAAGAGGATGTGTTACCACACCTGACTTGCGCACTCTTTTTG  750

seq1  AAAGATGAGTATCTCTA-GGGGAAGACATCATCAGTCCTTAGCTGGGAGT  798
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AAAGATGAGTATCTCTAGGGGGAAGACATCATCAGTCCTTAGCTGGGAGT  800

seq1  GTGGCTCAGAT-GGTAGAGTGCTGGCCCAGCACACACAAAGCCCTAGGTT  847
      ||||||||||| |||||||| |||||||||||||||||||||||||||||
seq2  GTGGCTCAGATGGGTAGAGTTCTGGCCCAGCACACACAAAGCCCTAGGTT  850

seq1  CAA-TCCCCAGGACTGCAT  865
       || |||||||||||||||
seq2  TAATTCCCCAGGACTGCAT  869