BAC Information

Click to search

BAC

Clone NameB6Ng01-094D23
Chromosome16 (Build37)
Map Location 71,973,076 - 72,126,272
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039231
Downstream geneRobo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094D23.bB6Ng01-094D23.g
ACCDH905519DH905520
length1,0921,036
definitionDH905519|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D23, 5' end.DH905520|Mus musculus domesticus DNA, BAC clone: B6Ng01-094D23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,973,076 - 71,974,171)(72,125,236 - 72,126,272)
sequence
gaattcactagtgtagtggcccaaatatttcataggatcatggagaaata
gctgaggaatcattctttcagtggagacaggttgaaatcaattcaccata
ggtagttcaaaaccatccataactccatattcaagattcacatgatatac
agacatgcatttagcaaaacattcacagtcataaaataacatagaatatc
taaaaaattataattgatactttaagaattatgtatcacagcctattttt
actccatcttttgctgtctcattttgttcctcaatgatgactgttttaca
tatgtctatattgtttaagctttctagggtggatttacttataatgggcc
tgaaaaactaaataatcctatgtacatctttaattagatacattacattg
tattaaattgctttgttactagtgtatccaactaaaataaaagttttttt
ctattacaggtaaggaccaaatttttcaagtcttttaatgttatatcctt
ctagtatgtggtgcaattaaagtatcacatttgaatttttattttgaaat
ctgttaggatcttccattgtattaatatttttctttcaggaggatagcca
gattgtgcctcatttgggtctgtttcatatttcaaaatgattaattaggt
tcaggttatatagtttgaaagaaaatcaagatagctggtagtgtgcgttt
ctctgtgaattccatcagaagatgagtaattctgacttcttcccatacaa
gaaacttttaatcacgagaatatagaagtgattgccagggttttggtaca
ggatgtgtattttatctttaaaattattaagtatatttggagggagatat
tttgggagcataaaattatcttcttctcatcgtattctcactcattagta
ttacatctgttgcagtttattgccagcattatttttatgatgcttgctaa
aggtgattttcaaactccatcacttctacttaagaataataagtaatgtc
aaataaaggtttagcatttctttcttatgtggatgtatcatctatggtag
tgccaaggaaaaattagtttttactaaatgagtaaaatctgc
gaattccctagggttctctggctagccagtcaagcaaaatgaacaaatca
ggtttttaaaaaagcccaccttgtcttgatcaaaatataatagttactcc
taagggacgacaccaaaagttgacatctggctgtcccatttatgtgcacc
catagggttgcatacccacaaaaataagtgcagctgaacacaggtagaca
tgtgtgtatgtagtatgagttagaaaaaaaaacttgttatataaatgccg
agtaaatgaaataagcatgttaacgtgtaaaaatcaacttcagaacaagc
aacatttatggacagaaagataaactttataatagatgaattaaataatt
cagaaacgagttgaatatctaaaaatgcacaagaaaatcttccggggaaa
tataaaataatgaaagagaccacaataagagattagaactacttctccat
aactactaagaaaatacagtatcattatgagtacacatgacttgaactac
attactaaatgcctgactaacacaatcataacaaagaactaacttaatca
atcattggttcttccaattatatattaatctttcactgaaatatatgttc
tagaatagaaaaaataccttaaatagaaaagagtagaggaaatttaaatc
aaaaattaaactttaagaaaggattcatgagaaatatcaaattagaaatt
agataccatgtgtttaatagggtcatcaatgaaagactctaggaaaaaat
attgcaaatcaaatgatctataaaaaagtaggacacaaagatcacagaat
ccatataagtaatttccataaaatatgtcatgaaatgtttattacaatac
catattaatggtttataatatctcttgattataaagtcatattcattata
tatacactattatattatatactgtatatatataccctattaatactata
tatacactatatataccctatatatatatatataatatatatattatacc
gcttatatatatccataacaaactaaaggcaggcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_71973076_71974171
seq2: B6Ng01-094D23.b_48_1139

seq1  GAATTCACTAGTGTAGTGGCCCAAATATTTCATAGGATCATGGAGAAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTAGTGTAGTGGCCCAAATATTTCATAGGATCATGGAGAAATA  50

seq1  GCTGAGGAATCATTCTTTCAGTGGAGACAGGTTGAAATCAATTCACCATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAGGAATCATTCTTTCAGTGGAGACAGGTTGAAATCAATTCACCATA  100

seq1  GGTAGTTCAAAACCATCCATAACTCCATATTCAAGATTCACATGATATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAGTTCAAAACCATCCATAACTCCATATTCAAGATTCACATGATATAC  150

seq1  AGACATGCATTTAGCAAAACATTCACAGTCATAAAATAACATAGAATATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATGCATTTAGCAAAACATTCACAGTCATAAAATAACATAGAATATC  200

seq1  TAAAAAATTATAATTGATACTTTAAGAATTATGTATCACAGCCTATTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAATTATAATTGATACTTTAAGAATTATGTATCACAGCCTATTTTT  250

seq1  ACTCCATCTTTTGCTGTCTCATTTTGTTCCTCAATGATGACTGTTTTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCATCTTTTGCTGTCTCATTTTGTTCCTCAATGATGACTGTTTTACA  300

seq1  TATGTCTATATTGTTTAAGCTTTCTAGGGTGGATTTACTTATAATGGGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTCTATATTGTTTAAGCTTTCTAGGGTGGATTTACTTATAATGGGCC  350

seq1  TGAAAAACTAAATAATCCTATGTACATCTTTAATTAGATACATTACATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAACTAAATAATCCTATGTACATCTTTAATTAGATACATTACATTG  400

seq1  TATTAAATTGCTTTGTTACTAGTGTATCCAACTAAAATAAAAGTTTTTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTGCTTTGTTACTAGTGTATCCAACTAAAATAAAAGTTTTTTT  450

seq1  CTATTACAGGTAAGGACCAAATTTTTCAAGTCTTTTAATGTTATATCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTACAGGTAAGGACCAAATTTTTCAAGTCTTTTAATGTTATATCCTT  500

seq1  CTAGTATGTGGTGCAATTAAAGTATCACATTTGAATTTTTATTTTGAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTATGTGGTGCAATTAAAGTATCACATTTGAATTTTTATTTTGAAAT  550

seq1  CTGTTAGGATCTTCCATTGTATTAATATTTTTCTTTCAGGAGGATAGCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTAGGATCTTCCATTGTATTAATATTTTTCTTTCAGGAGGATAGCCA  600

seq1  GATTGTGCCTCATTTGGGTCTGTTTCATATTTCAAAATGATTAATTAGGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTGTGCCTCATTTGGGTCTGTTTCATATTTCAAAATGATTAATTAGGT  650

seq1  TCAGGTTATATAGTTTGAAAGAAAATCAAGATAGCTGGTAGTGTGCGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTTATATAGTTTGAAAGAAAATCAAGATAGCTGGTAGTGTGCGTTT  700

seq1  CTCTGTGAATTCCATCAGAAGATGAGTAATTCTGACTTCTTCCCATACAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGAATTCCATCAGAAGATGAGTAATTCTGACTTCTTCCCATACAA  750

seq1  GAAACTTTTAATCACGAGAATATAGAAGTGATTGCCA-GGTTTTGGTACA  799
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GAAACTTTTAATCACGAGAATATAGAAGTGATTGCCAGGGTTTTGGTACA  800

seq1  GGATGTGTATTTTATCTTTAAAATTATTAAGTATATTTGGAGGGAGATAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGTGTATTTTATCTTTAAAATTATTAAGTATATTTGGAGGGAGATAT  850

seq1  TTTGGAAGCATAAAATTATCTTCTTCTCATCGTATTCTCACTCATTAGTA  899
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGGAGCATAAAATTATCTTCTTCTCATCGTATTCTCACTCATTAGTA  900

seq1  TTACATCTGTTGCAGTTTATTGCCAGCATTATTTTTATGATGCTTGCTAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATCTGTTGCAGTTTATTGCCAGCATTATTTTTATGATGCTTGCTAA  950

seq1  AGGTGATTTTCAAACTCCATCAC-TCTACTT-AGAATAATTAGTAATGTT  997
      ||||||||||||||||||||||| ||||||| |||||||| ||||||| |
seq2  AGGTGATTTTCAAACTCCATCACTTCTACTTAAGAATAATAAGTAATG-T  999

seq1  AAAATAAAGTTTTAGCATTTC-TTCTTATGTGGATGTATCAATTCTTATG  1046
       |||||||| ||||||||||| |||||||||||||||||||  || ||||
seq2  CAAATAAAGGTTTAGCATTTCTTTCTTATGTGGATGTATCA--TC-TATG  1046

seq1  TTAGTGCCAAGGGAGATATTAGTTTTTTTACTAAATGAGTAATAATCTGC  1096
       ||||||||| ||| | |||||  |||||||||||||||||| |||||||
seq2  GTAGTGCCAA-GGAAAAATTAG--TTTTTACTAAATGAGTAA-AATCTGC  1092

seq1: chr16_72125236_72126272
seq2: B6Ng01-094D23.g_67_1102 (reverse)

seq1  ATGCCTGCCTTTAGTTTTGTTTATTGGATATATAT-AGC-GTATATATAT  48
      |||||||||||||| ||||||   ||||||||||| ||| ||||| ||||
seq2  ATGCCTGCCTTTAG-TTTGTT--ATGGATATATATAAGCGGTATA-ATAT  46

seq1  ATATATATATATATATATATATAGTGTATATATAGTGTATATATAGTATA  98
      |||||| ||||||||||||||||| |||||||||||||||||||||||| 
seq2  ATATAT-TATATATATATATATAGGGTATATATAGTGTATATATAGTATT  95

seq1  TATAGTGTATATATATACAGTATAT-ATAT-ATAGTGTATATAT-ATGAA  145
       |||| ||||||||||||||||||| |||| ||||||||||||| |||||
seq2  AATAGGGTATATATATACAGTATATAATATAATAGTGTATATATAATGAA  145

seq1  TATGACTTTAT-ATCAAGAGATATTTATAAACCATTTAATATGGTATTGT  194
      ||||||||||| ||||||||||| |||||||||| |||||||||||||||
seq2  TATGACTTTATAATCAAGAGATA-TTATAAACCA-TTAATATGGTATTGT  193

seq1  AATAAACATTTCATGACATATTTTTATGGAAATTACTTATATGGATTCTG  244
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATAAACATTTCATGACATA-TTTTATGGAAATTACTTATATGGATTCTG  242

seq1  TGAATCTTTGTGTCCTACTTTTTTATAGATCATTTGATTTGCAATATTTT  294
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-ATCTTTGTGTCCTACTTTTTTATAGATCATTTGATTTGCAATATTTT  291

seq1  TTCCTAGAGTCTTTCATTGATGA-CCTATTAAACACATGGTATCTAATTT  343
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTCCTAGAGTCTTTCATTGATGACCCTATTAAACACATGGTATCTAATTT  341

seq1  CTAATTTGATATTTCTCATGAATCCTTTCTTAAAGTTTAATTTTTGATTT  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATTTGATATTTCTCATGAATCCTTTCTTAAAGTTTAATTTTTGATTT  391

seq1  AAA-TTCCTCTACTCTTTTCTATTTAAGGTATTTTTTCTATTCTAGAACA  442
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTCCTCTACTCTTTTCTATTTAAGGTATTTTTTCTATTCTAGAACA  441

seq1  TATATTTCAGTGAAAGATTAATATATAATTGGAAGAACCAATGATTGATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTTCAGTGAAAGATTAATATATAATTGGAAGAACCAATGATTGATT  491

seq1  AAGTTAGTTCTTTGTTATGATTGTGTTAGTCAGGCATTTAGTAATGTAGT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTAGTTCTTTGTTATGATTGTGTTAGTCAGGCATTTAGTAATGTAGT  541

seq1  TCAAGTCATGTGTACTCATAATGATACTGTATTTTCTTAGTAGTTATGGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTCATGTGTACTCATAATGATACTGTATTTTCTTAGTAGTTATGGA  591

seq1  GAAGTAGTTCTAATCTCTTATTGTGGTCTCTTTCATTATTTTATATTTCC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGTTCTAATCTCTTATTGTGGTCTCTTTCATTATTTTATATTTCC  641

seq1  CCGGAAGATTTTCTTGTGCATTTTTAGATATTCAACTCGTTTCTGAATTA  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGATTTTCTTGTGCATTTTTAGATATTCAACTCGTTTCTGAATTA  691

seq1  TTTAATTCATCTATTATAAAGTTTATCTTTCTGTCCATAAATGTTGCTTG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTCATCTATTATAAAGTTTATCTTTCTGTCCATAAATGTTGCTTG  741

seq1  TTCTGAAGTTGATTTTTACACGTTAACATGCTTATTTCATTTACTCGGCA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGAAGTTGATTTTTACACGTTAACATGCTTATTTCATTTACTCGGCA  791

seq1  TTTATATAACAAGTTTTTTTTTCTAACTCATACTACATACACACATGTCT  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATAACAAGTTTTTTTTTCTAACTCATACTACATACACACATGTCT  841

seq1  ACCTGTGTTCAGCTGCACTTATTTTTGTGGGTATGCAACCCTATGGGTGC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGTGTTCAGCTGCACTTATTTTTGTGGGTATGCAACCCTATGGGTGC  891

seq1  ACATAAATGGGACAGCCAGATGTCAACTTTTGGTGTCGTCCCTTAGGAGT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATAAATGGGACAGCCAGATGTCAACTTTTGGTGTCGTCCCTTAGGAGT  941

seq1  AACTATTATATTTTGATCAAGACAAGGTGGGCTTTTTTAAAAACCTGATT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATTATATTTTGATCAAGACAAGGTGGGCTTTTTTAAAAACCTGATT  991

seq1  TGTTCATTTTGCTTGACTGGCTAGCCAGAGAACCCTAGGGAATTC  1037
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCATTTTGCTTGACTGGCTAGCCAGAGAACCCTAGGGAATTC  1036