BAC Information

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BAC

Clone NameB6Ng01-094P01
Chromosome16 (Build37)
Map Location 94,482,212 - 94,644,280
singlet/doubletdoublet
Overlap geneHlcs, LOC100040857, Dscr6, LOC545178, Pigp, Ttc3
Upstream geneSetd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2, LOC622832
Downstream geneDscr3, Dyrk1a, Kcnj6, LOC666201, Kcnj15, Erg
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094P01.bB6Ng01-094P01.g
ACCDH906019DH906020
length1,1911,122
definitionDH906019|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P01, 5' end.DH906020|Mus musculus domesticus DNA, BAC clone: B6Ng01-094P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,643,053 - 94,644,280)(94,482,212 - 94,483,356)
sequence
gaattccactgccataatggcacctaggtacagccaatgtacactgcttc
actgtgtctaactctgttgcttccttgcgtttaaccttgtgctcatcacc
cgaacccccaccctttatcttcctcatgtgtaaacagatatgatcatgat
ctactacttacaggactgccttaaggaaacctgacataagcaaaaggcag
aagactagcacccaggagcacccagagaggcatacacagagtgctgctac
ctctgtcctctagccccaagtcttcatgcagaggggctctcaagccagaa
tggaatacttaaacaaataaagttaccttgactttttctggcttagattc
ttcaataatcacattacttgtgggccaagttagaattccagggagacgac
taattaaagtctttgccttttcaaagtgattaagagcttcgagaaatcta
aagacatatttgggaagaaagaagatattaaagatgtggcataatatttt
attccaaagtaattcaccaagacttcaagactgctgaaaagaccacatat
gataaatcgatagacataaatatccaatgtaatgtattttctttttaagt
aactaagacattattgctacttgttatagaaatgtaaatgaagcacattt
ctgtctagaatctcctacatccctgatcccaatcagacagtaactagaaa
ctaaaagtacttactttcgtctctaaaatctgcaaagaagcagggtgtgg
gggcgcaggcctttactccgggcacttgggaggcagaggcaggcggattt
ctgagttcaaggccagcctggtctacagagtgagttccaggacagccagg
gctatacagagaaaccctgtctcgaaaaaccaaaacaaaaatctgcaaag
aagtgtaggcacacactatattagagaacctaaaatcataaaagttcttc
taaaagtagaaaagatttaagttaatcagtcctatgtgatattcgatatc
agatttttcttctgtaaatcatctaaataatcagggtcaaacagacttgt
ctaaatctagcagtatcatttctcctcagccaccagcattttgaagacaa
gactgggagcaggaacctcagaacacaagtactagcaaggttcaccacga
gggttgacctagctctggctgaactttgcaagtctaatgaa
gaattcctatgatgaagacacaaacaaaagccatatgattaatgcattag
aaatggtgcgaactgcggagccgggcttggtggctcacatctgctgaggc
aggaagatccctgcaggcttaaaggtggcccctgctacagagtgtgttcc
aggccggtgtgggccagtgaaaacttgcctcaaaaaaaaaaaaatgttta
gaaattagataatgaaatgtaataaaagaatggtttttaaaggacaaaag
agcatcctgtgttgatattaatttttcaattggaagcatttccttccatt
tcttagcctagattccgggaacttattaagcacatcatgttttcttaacc
caatacacctcttaacaatccaaccatcgctgcattaactcgctgcatta
tcgtttaaactgcagtgcttacacaagtctcccatgctgcctcctttggt
cctcacacaatcctctcggatcgtcatctgtctctctctccgtcagtacg
gtgcacccacacaatgccaagctctgatccacacaaaccaagctcgccca
ggggcagcaaccaacccagaaggcagcgtctcccctttccacagtgcagg
catgaagggtggattttgctcttttcaagcgaagcaggtgggttcggtgt
gtggcatcccctggccaccgagcttttgctgtatgttaacatcactaacc
ccacagactggcctgctgctggctgagaactgaaagagctctgcaaaatc
atttgtcactatgaataagaaattgacagcatgtcaccacgacgggatta
gtaggaacacacacctggagaatctggcaggctgcccaaaaccaggtatc
cctcacagaccagcgatgaatacaggtgggaggtggactccggaaacact
gccaacacttccgttttccttttagacacgagtggcaaacatacacctaa
agcctctagacatcagcacactagagtagtgatttccgctactgaggaaa
cccagatcaaacactggtttcgatccaacttgatgcagaatccaatcagt
catgcttaagaactgttctggccctttcactgacgcgaagcagaattcag
tcttacagaataggcagcattg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_94643053_94644280
seq2: B6Ng01-094P01.b_49_1239 (reverse)

seq1  TTCA-TAGAC-TGC-AAGTTCAGCCACGAGCCTAGGCTACACCTCTCCGT  47
      |||| ||||| ||| ||||||||||| ||| |||||  |  |||   |||
seq2  TTCATTAGACTTGCAAAGTTCAGCCA-GAG-CTAGGTCAACCCT---CGT  45

seq1  GGTTGAAACACTTGCTCTAGTTTACTTTGTTGTTCTGGAAGTGTTTCCTG  97
      || ||||   ||||  ||||  |||||   ||||||    | | ||||||
seq2  GG-TGAA--CCTTG--CTAG--TACTT--GTGTTCT----GAGGTTCCTG  82

seq1  CTTCTCAGTCTTGTCTTCCAAAATGGCTGTGTGGCCTGAGGAGACATGAT  147
      | || |||||||||||| |||||| |||| |||| ||||||||| |||||
seq2  C-TCCCAGTCTTGTCTT-CAAAAT-GCTG-GTGG-CTGAGGAGAAATGAT  127

seq1  ACTGGCTTAGGATTTAAGACAAGTCTGTTTGGACCCTTGAATTATTTTAG  197
      ||| |||   ||||| |||||||||||||| ||||||   |||| |||||
seq2  ACT-GCT--AGATTT-AGACAAGTCTGTTT-GACCCT--GATTA-TTTAG  169

seq1  ATGATTTTACAGAAGAAAAATTCTTGATAATCGAATATCACATAGGACTT  247
      |||| ||||||||||||||||   |||| ||||||||||||||||||| |
seq2  ATGA-TTTACAGAAGAAAAAT--CTGAT-ATCGAATATCACATAGGAC-T  214

seq1  GATTAACCTTAAATCTTTTTCTACTTTTTAGAAGAACTTTTATGATTTTA  297
      |||||| |||||||| |||||||| |||||||||||||||||||||||||
seq2  GATTAA-CTTAAATC-TTTTCTAC-TTTTAGAAGAACTTTTATGATTTTA  261

seq1  GGTTCTCTAATATAGTGTGTGCCTACACCTTCTTTGCAGATTTTTGTTTT  347
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGTTCTCTAATATAGTGTGTGCCTACA-CTTCTTTGCAGATTTTTGTTTT  310

seq1  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  360

seq1  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTTGAACTCAGAAATCCGCCTGCCTCTGCC  410

seq1  TCCCAAGTGCCCGGAGTAAAGGCCTGCGCCCCCACACCCTGCTTCTTTGC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCCCGGAGTAAAGGCCTGCGCCCCCACACCCTGCTTCTTTGC  460

seq1  AGATTTTAGAGACGAAAGTAAGTACTTTTAGTTTCTAGTTACTGTCTGAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTTAGAGACGAAAGTAAGTACTTTTAGTTTCTAGTTACTGTCTGAT  510

seq1  TGGGATCAGGGATGTAGGAGATTCTAGACAGAAATGTGCTTCATTTACAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCAGGGATGTAGGAGATTCTAGACAGAAATGTGCTTCATTTACAT  560

seq1  TTCTATAACAAGTAGCAATAATGTCTTAGTTACTTAAAAAGAAAATACAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAACAAGTAGCAATAATGTCTTAGTTACTTAAAAAGAAAATACAT  610

seq1  TACATTGGATATTTATGTCTATCGATTTATCATATGTGGTCTTTTCAGCA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTGGATATTTATGTCTATCGATTTATCATATGTGGTCTTTTCAGCA  660

seq1  GTCTTGAAGTCTTGGTGAATTACTTTGGAATAAAATATTATGCCACATCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGAAGTCTTGGTGAATTACTTTGGAATAAAATATTATGCCACATCT  710

seq1  TTAATATCTTCTTTCTTCCCAAATATGTCTTTAGATTTCTCGAAGCTCTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATATCTTCTTTCTTCCCAAATATGTCTTTAGATTTCTCGAAGCTCTT  760

seq1  AATCACTTTGAAAAGGCAAAGACTTTAATTAGTCGTCTCCCTGGAATTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACTTTGAAAAGGCAAAGACTTTAATTAGTCGTCTCCCTGGAATTCT  810

seq1  AACTTGGCCCACAAGTAATGTGATTATTGAAGAATCTAAGCCAGAAAAAG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGGCCCACAAGTAATGTGATTATTGAAGAATCTAAGCCAGAAAAAG  860

seq1  TCAAGGTAACTTTATTTGTTTAAGTATTCCATTCTGGCTTGAGAGCCCCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGTAACTTTATTTGTTTAAGTATTCCATTCTGGCTTGAGAGCCCCT  910

seq1  CTGCATGAAGACTTGGGGCTAGAGGACAGAGGTAGCAGCACTCTGTGTAT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCATGAAGACTTGGGGCTAGAGGACAGAGGTAGCAGCACTCTGTGTAT  960

seq1  GCCTCTCTGGGTGCTCCTGGGTGCTAGTCTTCTGCCTTTTGCTTATGTCA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCTCTGGGTGCTCCTGGGTGCTAGTCTTCTGCCTTTTGCTTATGTCA  1010

seq1  GGTTTCCTTAAGGCAGTCCTGTAAGTAGTAGATCATGATCATATCTGTTT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCCTTAAGGCAGTCCTGTAAGTAGTAGATCATGATCATATCTGTTT  1060

seq1  ACACATGAGGAAGATAAAGGGTGGGGGTTCGGGTGATGAGCACAAGGTTA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACATGAGGAAGATAAAGGGTGGGGGTTCGGGTGATGAGCACAAGGTTA  1110

seq1  AACGCAAGGAAGCAACAGAGTTAGACACAGTGAAGCAGTGTACATTGGCT  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGCAAGGAAGCAACAGAGTTAGACACAGTGAAGCAGTGTACATTGGCT  1160

seq1  GTACCTAGGTGCCATTATGGCAGTGGAATTC  1228
      |||||||||||||||||||||||||||||||
seq2  GTACCTAGGTGCCATTATGGCAGTGGAATTC  1191

seq1: chr16_94482212_94483356
seq2: B6Ng01-094P01.g_69_1190

seq1  GAATTCCTATGATGAAGACACAAACAAAAGCCATATGATTAATGCATTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGATGAAGACACAAACAAAAGCCATATGATTAATGCATTAG  50

seq1  AAATGGTGCGAACTGCGGAGCCGGGCTTGGTGGCTCACATCTGCTGAGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGCGAACTGCGGAGCCGGGCTTGGTGGCTCACATCTGCTGAGGC  100

seq1  AGGAAGATCCCTGCAGGCTTAAAGGTGGCCCCTGCTACAGAGTGTGTTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGATCCCTGCAGGCTTAAAGGTGGCCCCTGCTACAGAGTGTGTTCC  150

seq1  AGGCCGGTGTGGGCCAGTGAAAACTTGCCTCAAAAAAAAAAAAATGTTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGGTGTGGGCCAGTGAAAACTTGCCTCAAAAAAAAAAAAATGTTTA  200

seq1  GAAATTAGATAATGAAATGTAATAAAAGAATGGTTTTTAAAGGACAAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATTAGATAATGAAATGTAATAAAAGAATGGTTTTTAAAGGACAAAAG  250

seq1  AGCATCCTGTGTTGATATTAATTTTTCAATTGGAAGCATTTCCTTCCATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCTGTGTTGATATTAATTTTTCAATTGGAAGCATTTCCTTCCATT  300

seq1  TCTTAGCCTAGATTCCGGGAACTTATTAAGCACATCATGTTTTCTTAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCTAGATTCCGGGAACTTATTAAGCACATCATGTTTTCTTAACC  350

seq1  CAATACACCTCTTAACAATCCAACCATCGCTGCATTAACTCGCTGCATTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACACCTCTTAACAATCCAACCATCGCTGCATTAACTCGCTGCATTA  400

seq1  TCGTTTAAACTGCAGTGCTTACACAAGTCTCCCATGCTGCCTCCTTTGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAAACTGCAGTGCTTACACAAGTCTCCCATGCTGCCTCCTTTGGT  450

seq1  CCTCACACAATCCTCTCGGATCGTCATCTGTCTCTCTCTCCGTCAGTACG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACACAATCCTCTCGGATCGTCATCTGTCTCTCTCTCCGTCAGTACG  500

seq1  GTGCACCCACACAATGCCAAGCTCTGATCCACACAAACCAAGCTCGCCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCACCCACACAATGCCAAGCTCTGATCCACACAAACCAAGCTCGCCCA  550

seq1  GGGGCAGCAACCAACCCAGAAGGCAGCGTCTCCCCTTTCCACAGTGCAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCAGCAACCAACCCAGAAGGCAGCGTCTCCCCTTTCCACAGTGCAGG  600

seq1  CATGAAGGGTGGATTTTGCTCTTTTCAAGCGAAGCAGGTGGGTTCGGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAAGGGTGGATTTTGCTCTTTTCAAGCGAAGCAGGTGGGTTCGGTGT  650

seq1  GTGGCATCCCCTGGCCACCGAGCTTTTGCTGTATGTTAACATCACTAACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCATCCCCTGGCCACCGAGCTTTTGCTGTATGTTAACATCACTAACC  700

seq1  CCACAGACTGGCCTGCTGCTGGCTGAGAACTGAAAGAGCTCTGCAAAATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGACTGGCCTGCTGCTGGCTGAGAACTGAAAGAGCTCTGCAAAATC  750

seq1  ATTTGTCACTATGAATAAGAAATTGACAGCATGTCACCACGACGGGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCACTATGAATAAGAAATTGACAGCATGTCACCACGACGGGATTA  800

seq1  GTAGGAACACACACCTGGAGAATCTGGCAGGCTGCCCAAAACCAGGTATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGAACACACACCTGGAGAATCTGGCAGGCTGCCCAAAACCAGGTATC  850

seq1  CCTCACAGACCAGCGATGAATACAGGTGGGAGGTGGACTCCGGAAACACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAGACCAGCGATGAATACAGGTGGGAGGTGGACTCCGGAAACACT  900

seq1  GCCAACACTTCCGTTTTCCTTTTAGACACGAGTGGCAAACATAACACCTA  950
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GCCAACACTTCCGTTTTCCTTTTAGACACGAGTGGCAAACAT-ACACCTA  949

seq1  AAGCCTTCTAGACATCAGCACACAGAAGTAGTGATTTCCCGCCTACTGAG  1000
      ||||| |||||||||||||||||   |||||||||||||   ||||||||
seq2  AAGCC-TCTAGACATCAGCACACTAGAGTAGTGATTTCC--GCTACTGAG  996

seq1  GAAAACCCAGATCAAAACAACTGGTTTCGATCCCAACTGATGGCAGAATC  1050
      | ||||||||||||||   |||||||||||||| |  |||| ||||||||
seq2  G-AAACCCAGATCAAA--CACTGGTTTCGATCCAACTTGAT-GCAGAATC  1042

seq1  CACATCAGTCATGCTCAGGGAACTGGTTCCTGCGCCCCTTCCCACCGACG  1100
      || |||||||||||| |  ||||||  | ||| |||| ||  ||| ||||
seq2  CA-ATCAGTCATGCTTA-AGAACTG--TTCTG-GCCCTTT--CACTGACG  1085

seq1  CCAAAAGCCAGAATCTCAAGTCTTATACAGAACAGCGCAGCATTG  1145
      | ||    |||||| || |||||  ||||||| || |||||||||
seq2  CGAA---GCAGAAT-TC-AGTCT--TACAGAATAG-GCAGCATTG  1122