BAC Information

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BAC

Clone NameB6Ng01-095D17
Chromosome16 (Build37)
Map Location 45,762,126 - 45,917,858
singlet/doubletdoublet
Overlap genePhldb2, EG667418
Upstream geneCd200r1, LOC271374, F630003A18Rik, Cd200r4, LOC546665, Cd200r2, Cd200r3, EG433021, Ccdc80, Slc35a5, Atg3, EG547267, Btla, Cd200, LOC385905, Gm609, LOC628681, Slc9a10, Gcet2, BC016579, Tmprss7, Tagln3, Abhd10
Downstream genePlcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095D17.bB6Ng01-095D17.g
ACCDH906230DH906231
length1,1351,059
definitionDH906230|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D17, 5' end.DH906231|Mus musculus domesticus DNA, BAC clone: B6Ng01-095D17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(45,916,705 - 45,917,858)(45,762,126 - 45,763,179)
sequence
gaattctctcagaaaaaggctgggacatgcacctggccaatggatgtgct
gcaggggtccatgtcacaggaaaatttctcctaactcactgttaggctgc
agagttcctctacaagctgagagccttcaaggcttgagaaattaacaaaa
cgggaaggaagagaagggctctcgcatcctggtgctgatgagcacacagt
ctcctggaaactgatgttgggatgcatatgccaagcagcttgtcacctct
gcttttcaatgcattgtctgaggaagcatcaggatgagaaactcaaaatg
caaggtcttgacaaagggcgtcactgttggggcttgattggtttttgtgg
cttttttttctttctttctgttttcatctttcagaagaatgaaataaaaa
taaagctggcttgaaataattccagtcatatgtgtatcccgacaccacac
attttttggtcatgttaacttctggtgacttcaaagaacactgtcgtttt
tctaggctccgaattcatggtgtttttaatttaaacatagggtttgccaa
tcctagccctaaaagaaatattttcgtgatccagttcttttatcaactcc
acatcgtgggtgtggtgtccttccctggtccagcttccctctgtgctctt
gagaaaccaaacacagaggctgggaaaatattctctatggatacaaccct
gctttcatctcctatcaaggatgcataatgaggaatgtgttgggaaaaag
aagaaacaaaattaataaattttagttatttattattattactattaata
tacttaagtaaatgagggagcagggctaggcagatggctcaccaatgtgt
acttgcagagaaccttggttacatttctcggcacttacatgatggctccc
agtcatacataactctacttccagaggacctgttgcagccttctgtcttt
aaaagcctatcattttgctaactgcatggctggatccacacacttcaaaa
caagccttaagatcaagtctaagcttcttcttatcctgtggaataaaagg
tggctccttggaagagatttatagaaggaaatacataaagtcatttctag
tgttcttaagtcaggctttatgaagacacatgaca
gaattccaagtccctgactctgtgctcctactgtgagagagtgtttaaca
ccagctttatcagtaagctgggggttttcgtcctggaatgctgatagaag
agggacagatgtggcaggggccgcaaggctggatctgggtctcactttac
ccagaggatggttgggcgtttgtggtcaaggcttcagcaaggggtaacta
ccaccactaatttatagtgtggatgtgtttgcttctgagttcctagtggt
gcttttgctagtctcaaaagataaagacaactgtgagtggctaagtcctt
ctacaaattttaatatacagaataactaatgctttctctctaccaaagtt
aaagggtcaaaaaaacttttgaaattctgactgtgttttgaagaccattg
tcattataataatagtagtaataataataataatcagaaatggaaatcgg
gctaactcaagaggtaacttgagttttgaagcacagtataaatcagaaac
caagcataaagaacttgtagtagagccgggtgtggtggcgcatgccttta
atcccagcactcgggaggcagaggcaggcgaatttctgagttcgagggca
gcctggtctacaaagtgagttccaggacagccagggctacacagagaaac
cctttctcaaaaaaccaaaaaaaaaaaaaaaaaaagaactttgtagtagg
aagtggaccttatcattgtatggccagcatgaaacatatgatacgttgaa
agggatatgacttcccagggtccccaagattccctagcccccccgcctta
tagattttatattgggagatttggggtttatatacaccttatgtcttaaa
ctgatgagtttacatttgaaaccaggaggcggctttcacgagtcttaact
tggatatattggtccggtgaacaggcagaagttgctggttctccatgctg
tcaagagctgtccagctcaacgttgtcataggcctgattcttgtagctgc
gatctgggtatggaaacctattcagtaaacgtttgactcgatgctgggcc
ggctgtaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_45916705_45917858
seq2: B6Ng01-095D17.b_49_1183 (reverse)

seq1  TGTCATGGTCATTGTGTCTCTTCATAAAAGCCTGAC-TAAG-ACACTAGG  48
      |||||         ||| ||||||| |||||||||| |||| ||||||| 
seq2  TGTCA---------TGTGTCTTCAT-AAAGCCTGACTTAAGAACACTAGA  40

seq1  AATACCAAACTTTATGTATGTTCCTTTCTATATAATTCTCTTCCACAGTA  98
      |||     ||||||||||| |||||   | ||||| ||||||||| || |
seq2  AAT----GACTTTATGTAT-TTCCT---TCTATAAATCTCTTCCA-AGGA  81

seq1  GGCCACCTTTTTAATTCACAGGATAAG-AGTAGCTTAGACTTTGATTCTT  147
       |||||| ||||| | ||||||||||| || ||||||||| |||| ||||
seq2  -GCCACC-TTTTATTCCACAGGATAAGAAGAAGCTTAGAC-TTGA-TCTT  127

seq1  AAGGCTTGTTTTGAAGTGTGTGGAT-CAGCCATGCAGTTAGCAAAATGAT  196
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AAGGCTTGTTTTGAAGTGTGTGGATCCAGCCATGCAGTTAGCAAAATGAT  177

seq1  AGGCTTTTAAAGACAGAAGGCTGCAACAGGTCCTCTGGAAGTAGAGTTAT  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTTTTAAAGACAGAAGGCTGCAACAGGTCCTCTGGAAGTAGAGTTAT  227

seq1  GTATGACTGGGAGCCATCATGTAAGTGCCGAGAAATGTAACCAAGGTTCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGACTGGGAGCCATCATGTAAGTGCCGAGAAATGTAACCAAGGTTCT  277

seq1  CTGCAAGTACACATTGGTGAGCCATCTGCCTAGCCCTGCTCCCTCATTTA  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAGTACACATTGGTGAGCCATCTGCCTAGCCCTGCTCCCTCATTTA  327

seq1  CTTAAGTATATTAATAGTAATAATAATAAATAACTAAAATTTATTAATTT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGTATATTAATAGTAATAATAATAAATAACTAAAATTTATTAATTT  377

seq1  TGTTTCTTCTTTTTCCCAACACATTCCTCATTATGCATCCTTGATAGGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTCTTTTTCCCAACACATTCCTCATTATGCATCCTTGATAGGAG  427

seq1  ATGAAAGCAGGGTTGTATCCATAGAGAATATTTTCCCAGCCTCTGTGTTT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGCAGGGTTGTATCCATAGAGAATATTTTCCCAGCCTCTGTGTTT  477

seq1  GGTTTCTCAAGAGCACAGAGGGAAGCTGGACCAGGGAAGGACACCACACC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCAAGAGCACAGAGGGAAGCTGGACCAGGGAAGGACACCACACC  527

seq1  CACGATGTGGAGTTGATAAAAGAACTGGATCACGAAAATATTTCTTTTAG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGATGTGGAGTTGATAAAAGAACTGGATCACGAAAATATTTCTTTTAG  577

seq1  GGCTAGGATTGGCAAACCCTATGTTTAAATTAAAAACACCATGAATTCGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGGATTGGCAAACCCTATGTTTAAATTAAAAACACCATGAATTCGG  627

seq1  AGCCTAGAAAAACGACAGTGTTCTTTGAAGTCACCAGAAGTTAACATGAC  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTAGAAAAACGACAGTGTTCTTTGAAGTCACCAGAAGTTAACATGAC  677

seq1  CAAAAAATGTGTGGTGTCGGGATACACATATGACTGGAATTATTTCAAGC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAATGTGTGGTGTCGGGATACACATATGACTGGAATTATTTCAAGC  727

seq1  CAGCTTTATTTTTATTTCATTCTTCTGAAAGATGAAAACAGAAAGAAAGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTATTTTTATTTCATTCTTCTGAAAGATGAAAACAGAAAGAAAGA  777

seq1  AAAAAAAGCCACAAAAACCAATCAAGCCCCAACAGTGACGCCCTTTGTCA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGCCACAAAAACCAATCAAGCCCCAACAGTGACGCCCTTTGTCA  827

seq1  AGACCTTGCATTTTGAGTTTCTCATCCTGATGCTTCCTCAGACAATGCAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTTGCATTTTGAGTTTCTCATCCTGATGCTTCCTCAGACAATGCAT  877

seq1  TGAAAAGCAGAGGTGACAAGCTGCTTGGCATATGCATCCCAACATCAGTT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAAGCAGAGGTGACAAGCTGCTTGGCATATGCATCCCAACATCAGTT  927

seq1  TCCAGGAGACTGTGTGCTCATCAGCACCAGGATGCGAGAGCCCTTCTCTT  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGAGACTGTGTGCTCATCAGCACCAGGATGCGAGAGCCCTTCTCTT  977

seq1  CCTTCCCGTTTTGTTAATTTCTCAAGCCTTGAAGGCTCTCAGCTTGTAGA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCCCGTTTTGTTAATTTCTCAAGCCTTGAAGGCTCTCAGCTTGTAGA  1027

seq1  GGAACTCTGCAGCCTAACAGTGAGTTAGGAGAAATTTTCCTGTGACATGG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTCTGCAGCCTAACAGTGAGTTAGGAGAAATTTTCCTGTGACATGG  1077

seq1  ACCCCTGCAGCACATCCATTGGCCAGGTGCATGTCCCAGCCTTTTTCTGA  1146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCTGCAGCACATCCATTGGCCAGGTGCATGTCCCAGCCTTTTTCTGA  1127

seq1  GAGAATTC  1154
      ||||||||
seq2  GAGAATTC  1135

seq1: chr16_45762126_45763179
seq2: B6Ng01-095D17.g_70_1128

seq1  GAATTCCAAGTCCCTGACTCTGTGCTCCTACTGTGAGAGAGTGTTTAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTCCCTGACTCTGTGCTCCTACTGTGAGAGAGTGTTTAACA  50

seq1  CCAGCTTTATCAGTAAGCTGGGGGTTTTCGTCCTGGAATGCTGATAGAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCTTTATCAGTAAGCTGGGGGTTTTCGTCCTGGAATGCTGATAGAAG  100

seq1  AGGGACAGATGTGGCAGGGGCCGCAAGGCTGGATCTGGGTCTCACTTTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGACAGATGTGGCAGGGGCCGCAAGGCTGGATCTGGGTCTCACTTTAC  150

seq1  CCAGAGGATGGTTGGGCGTTTGTGGTCAAGGCTTCAGCAAGGGGTAACTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGGATGGTTGGGCGTTTGTGGTCAAGGCTTCAGCAAGGGGTAACTA  200

seq1  CCACCACTAATTTATAGTGTGGATGTGTTTGCTTCTGAGTTCCTAGTGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCACTAATTTATAGTGTGGATGTGTTTGCTTCTGAGTTCCTAGTGGT  250

seq1  GCTTTTGCTAGTCTCAAAAGATAAAGACAACTGTGAGTGGCTAAGTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTGCTAGTCTCAAAAGATAAAGACAACTGTGAGTGGCTAAGTCCTT  300

seq1  CTACAAATTTTAATATACAGAATAACTAATGCTTTCTCTCTACCAAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACAAATTTTAATATACAGAATAACTAATGCTTTCTCTCTACCAAAGTT  350

seq1  AAAGGGTCAAAAAAACTTTTGAAATTCTGACTGTGTTTTGAAGACCATTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGGTCAAAAAAACTTTTGAAATTCTGACTGTGTTTTGAAGACCATTG  400

seq1  TCATTATAATAATAGTAGTAATAATAATAATAATCAGAAATGGAAATCGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATAATAATAGTAGTAATAATAATAATAATCAGAAATGGAAATCGG  450

seq1  GCTAACTCAAGAGGTAACTTGAGTTTTGAAGCACAGTATAAATCAGAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAACTCAAGAGGTAACTTGAGTTTTGAAGCACAGTATAAATCAGAAAC  500

seq1  CAAGCATAAAGAACTTGTAGTAGAGCCGGGTGTGGTGGCGCATGCCTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCATAAAGAACTTGTAGTAGAGCCGGGTGTGGTGGCGCATGCCTTTA  550

seq1  ATCCCAGCACTCGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGGCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGCACTCGGGAGGCAGAGGCAGGCGAATTTCTGAGTTCGAGGGCA  600

seq1  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAAC  650

seq1  CCTTTCTCAAAAAACCAAAAAAAAAAAAAAAAAAAAAAAAGAAC-TTGTA  699
      ||||||||||||||||     ||||||||||||||||||||||| |||||
seq2  CCTTTCTCAAAAAACC-----AAAAAAAAAAAAAAAAAAAGAACTTTGTA  695

seq1  GTAGGAAAGTGGACCTTATCA-TGTATGGCCAGCATGAAACATATGATAC  748
      ||||| ||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTAGG-AAGTGGACCTTATCATTGTATGGCCAGCATGAAACATATGATAC  744

seq1  GTTGAAA-GGATATGACTTCCCAGGGTCCCCAAGATT-CCTAG--CCCCC  794
      ||||||| ||||||||||||||||||||||||||||| |||||  |||||
seq2  GTTGAAAGGGATATGACTTCCCAGGGTCCCCAAGATTCCCTAGCCCCCCC  794

seq1  GCCTTATAGATTTTATATT-GGAGATTTGGGGTTATAATACACCTTATGT  843
      ||||||||||||||||||| ||||||||||||||   |||||||||||||
seq2  GCCTTATAGATTTTATATTGGGAGATTTGGGGTTTATATACACCTTATGT  844

seq1  CTTAAACTGATGAGTTTACATTTGAAACCA-GAGGCGGCTTTCACCGAGT  892
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  CTTAAACTGATGAGTTTACATTTGAAACCAGGAGGCGGCTTTCA-CGAGT  893

seq1  CTTACCTT-GATATATT-GTCCGGTGAACAGGCAG-AGATGCTGG-TCTC  938
      |||| ||| |||||||| ||||||||||||||||| || |||||| ||||
seq2  CTTAACTTGGATATATTGGTCCGGTGAACAGGCAGAAGTTGCTGGTTCTC  943

seq1  CATGCTGTC-AGAGCTGTCCAGGCTCAACG-TGTCATAGGCCTGATCCTT  986
      ||||||||| ||||||||||| |||||||| ||||||||||||||| |||
seq2  CATGCTGTCAAGAGCTGTCCA-GCTCAACGTTGTCATAGGCCTGATTCTT  992

seq1  GTAGCTGCGATCTGGGTAATGGAAA-CTATTCAAGTAGACGTTTGACTCA  1035
      ||||||||||||||||| ||||||| |||||| |||| ||||||||||| 
seq2  GTAGCTGCGATCTGGGT-ATGGAAACCTATTC-AGTAAACGTTTGACTC-  1039

seq1  GATGCTGTG-CGGCTGTAAA  1054
      ||||||| | ||||||||||
seq2  GATGCTGGGCCGGCTGTAAA  1059