BAC Information

Click to search

BAC

Clone NameB6Ng01-095E17
Chromosome3 (Build37)16 (Build37)
Map Location 41,059,132 - 41,059,73768,751,348 - 68,752,196
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095E17.bB6Ng01-095E17.g
ACCDH906275DH906276
length652848
definitionDH906275|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E17, 5' end.DH906276|Mus musculus domesticus DNA, BAC clone: B6Ng01-095E17, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,059,132 - 41,059,737)(68,751,348 - 68,752,196)
sequence
gaattctttgttctctctgagccccatcttttaagggggctatatgattt
tctggagtccaccctcttgagttctttatatatattgggtattagtcccc
tatctgatttaagataggtaaagatccttttctaatctgttggtggtctt
tttgtcttattgacggtgtcttttgccttgcagaagctttgcagtttcat
gaggtcccatttgtcaatcctcgatcttaaagcacaacccattgctgttc
tattcaggaattttttccctgtgcccatatcttcaagacattccccactt
tctcctctataagtttcagtgtctttggttttatgtggagttccttgatc
cacttaaatttgaccttagtacaaggagagaggaatgggtccattcgcct
tcttctacatgataacaaccagttgtgccagcaccatttgttaaaaatgc
tgtctttttttccactggatggttttagctcccatgtcgaagatcaagtc
accataggtgtgtgggttcatttctgggttttcaattctattccattggt
ctacttgtctgtcactataccagtaccatgcaatttttatcaaaattgct
ctgtaatagagctttaggtcgagcatggtgattccacctgagggactttt
ta
gaattctccctttcccgttttgattattactgtttttattttaaggtctt
gtttaggtcactatattgttgatatgtcttgagtactgctaaatcttgcc
ccatctcactgcctggtactggtgagaacatggtccttagaagagaattg
aagattgttacctcactaaatcactatgaaacttctctttttaaaagtta
ctatactagcaatatatatttagaagaaagtacagagacaggaatgaata
gattaaaaactatatattcaaagtagactgtgataattttatggtgtgtg
tgacaatcagaaagccaccaaaattaatgcaaaagagaatagcttaggag
aatagcaatgggatgagcaaatgaacttgtttttgtttgcttgtttgatt
gtttgtttgttcttttttccctgtttttttaaattggttctggctccagc
cacaggttggcattgtttagcatcaatattaggagaagcccttggtcctg
tgaaggctcgatttccagtataggggaatgtcagggcagtgtgttgggag
tggctgggtgggaggtagagcatcctcatagaatcagagtaagggggaat
ggaagagggggagatcttgagggggaaacagggaaaggggaataacattt
gaaatgtcataaataaatatccaataaaaatagaaatgtggaattaataa
ataaccagtatgaagtttcccaacattttaaatgttttcttcacaagcaa
atgcagcgctcactgttataaacaaaagctgggttttaagttttctggtt
ggttgttgtttattaatatgtggcaacaaggaagagactttttttgca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41059132_41059737
seq2: B6Ng01-095E17.b_44_649 (reverse)

seq1  ACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGA  50
      | |||||||||||| ||||||||| |||||||||||||||||||||||||
seq2  ATTACAGAGCAATTTTGATAAAAATTGCATGGTACTGGTATAGTGACAGA  50

seq1  CAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCCACACAC  100
      |||| |||||||||||||||||||||| || |||||| ||| ||||||||
seq2  CAAGTAGACCAATGGAATAGAATTGAAAACCCAGAAATGAACCCACACAC  100

seq1  CTATGGTCACTTGATCTTCGACAAGGGAGCTAAAACCATCCAGTGG-AAA  149
      ||||||| ||||||||||||||| |||||||||||||||||||||| |||
seq2  CTATGGTGACTTGATCTTCGACATGGGAGCTAAAACCATCCAGTGGAAAA  150

seq1  AAAGACAGCATTTTCAACAAATGGTGCTGGCACAACTGGTTGTTATCATG  199
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AAAGACAGCATTTTTAACAAATGGTGCTGGCACAACTGGTTGTTATCATG  200

seq1  TAGAAGAATGCGAATTGATCCACTCCTATCTCCTTGTACTAAGGTCAAAT  249
      |||||||| |||||| || ||| |||| ||||||||||||||||||||||
seq2  TAGAAGAAGGCGAATGGACCCATTCCTCTCTCCTTGTACTAAGGTCAAAT  250

seq1  CTAAGTGGATCAAGGAACGCCACATAAAACCAGAGACACTGAAACTTATA  299
       ||||||||||||||||| ||||||||||||| |||||||||||||||||
seq2  TTAAGTGGATCAAGGAACTCCACATAAAACCAAAGACACTGAAACTTATA  300

seq1  GAGGAGAAAGTGGGGAAAAGCCTTGAAGATATGGTCACAGGGGAAAAATT  349
      ||||||||||||||| || | ||||||||||||| ||||||| |||||||
seq2  GAGGAGAAAGTGGGG-AATGTCTTGAAGATATGGGCACAGGGAAAAAATT  349

seq1  CCTGCATAGAACAGCAATGGCTTGTGCTGTAAGATTGAGAATAGACAAAT  399
      |||| ||||||||||||||| ||||||| |||||| ||| || |||||||
seq2  CCTGAATAGAACAGCAATGGGTTGTGCTTTAAGATCGAGGATTGACAAAT  399

seq1  GGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAAT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACCTCATGAAACTGCAAAGCTTCTGCAAGGCAAAAGACACCGTCAAT  449

seq1  AAGACAAAAAG-GCACCAACAGATTGGGAAAGGATCTTTACCTATCCTAA  498
      |||||||||||  |||||||||||| | |||||||||||||||||| |||
seq2  AAGACAAAAAGACCACCAACAGATTAGAAAAGGATCTTTACCTATCTTAA  499

seq1  ATCAGATAGGGGACTAATATCCAATATATATCAAGAACTCAAGAAGGTGG  548
      ||||||||||||||||||| ||||||||||| |||||||||||| |||||
seq2  ATCAGATAGGGGACTAATACCCAATATATATAAAGAACTCAAGAGGGTGG  549

seq1  ATTCCAGAAAATCAAATAACCCCATTAAAAAATGGGGCTCAGAGCTAAAC  598
      | |||||||||||| ||| |||| |||||| |||||||||||||   |||
seq2  ACTCCAGAAAATCATATAGCCCCCTTAAAAGATGGGGCTCAGAG-AGAAC  598

seq1  AAAGAATT  606
      ||||||||
seq2  AAAGAATT  606

seq1: chr16_68751348_68752196
seq2: B6Ng01-095E17.g_66_913

seq1  GAATTCTCCCTTTCCCGTTTTGATTATTACTGTTTTTATTTTAAGGTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCTTTCCCGTTTTGATTATTACTGTTTTTATTTTAAGGTCTT  50

seq1  GTTTAGGTCACTATATTGTTGATATGTCTTGAGTACTGCTAAATCTTGCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGGTCACTATATTGTTGATATGTCTTGAGTACTGCTAAATCTTGCC  100

seq1  CCATCTCACTGCCTGGTACTGGTGAGAACATGGTCCTTAGAAGAGAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCACTGCCTGGTACTGGTGAGAACATGGTCCTTAGAAGAGAATTG  150

seq1  AAGATTGTTACCTCACTAAATCACTATGAAACTTCTCTTTTTAAAAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTGTTACCTCACTAAATCACTATGAAACTTCTCTTTTTAAAAGTTA  200

seq1  CTATACTAGCAATATATATTTAGAAGAAAGTACAGAGACAGGAATGAATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACTAGCAATATATATTTAGAAGAAAGTACAGAGACAGGAATGAATA  250

seq1  GATTAAAAACTATATATTCAAAGTAGACTGTGATAATTTTATGGTGTGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAACTATATATTCAAAGTAGACTGTGATAATTTTATGGTGTGTG  300

seq1  TGACAATCAGAAAGCCACCAAAATTAATGCAAAAGAGAATAGCTTAGGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAATCAGAAAGCCACCAAAATTAATGCAAAAGAGAATAGCTTAGGAG  350

seq1  AATAGCAATGGGATGAGCAAATGAACTTGTTTTTGTTTGCTTGTTTGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCAATGGGATGAGCAAATGAACTTGTTTTTGTTTGCTTGTTTGATT  400

seq1  GTTTGTTTGTTCTTTTTTCCCTGTTTTTTTAAATTGGTTCTGGCTCCAGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGTTCTTTTTTCCCTGTTTTTTTAAATTGGTTCTGGCTCCAGC  450

seq1  CACAGGTTGGCATTGTTTAGCATCAATATTAGGAGAAGCCCTTGGTCCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTGGCATTGTTTAGCATCAATATTAGGAGAAGCCCTTGGTCCTG  500

seq1  TGAAGGCTCGATTTCCAGTATAGGGGAATGTCAGGGCAGTGTGTTGGGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTCGATTTCCAGTATAGGGGAATGTCAGGGCAGTGTGTTGGGAG  550

seq1  TGGCTGGGTGGGAGGTAGAGCATCCTCATAGAATCAGAGTAAGGGGGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGGGTGGGAGGTAGAGCATCCTCATAGAATCAGAGTAAGGGGGAAT  600

seq1  GGAAGA-GGGGAGATCTTGA-GGGGAAACAGGGAAA-GGGAATAACATTT  647
      |||||| ||||||||||||| ||||||||||||||| |||||||||||||
seq2  GGAAGAGGGGGAGATCTTGAGGGGGAAACAGGGAAAGGGGAATAACATTT  650

seq1  GAAATGTCAATAAATAAAATATCCAATAAAAATAGAAATGT-GAATAATA  696
      |||||||| |||||| ||||||||||||||||||||||||| |||| |  
seq2  GAAATGTC-ATAAAT-AAATATCCAATAAAAATAGAAATGTGGAATTAAT  698

seq1  AAATAACCAGTATGAAGTTTCCAACCATTTCAAATGTTTTCTTCACAAGC  746
      |||||||||||||||||||||| | ||||| |||||||||||||||||||
seq2  AAATAACCAGTATGAAGTTTCCCAACATTTTAAATGTTTTCTTCACAAGC  748

seq1  AAATGCAGCGCTCACTGTTCATAAACAAAAGCTGGTTTTAAAGTTTTCTT  796
      ||||||||||||||||||| ||||||||||||||| ||| ||||||||| 
seq2  AAATGCAGCGCTCACTGTT-ATAAACAAAAGCTGGGTTTTAAGTTTTCTG  797

seq1  GTTTGTTTGTTTGTTTATTTATTTTTTTGCAGC-AGGCAGAGACTTTTTG  845
      ||| |||   ||||||| ||| | | | ||| | ||| ||||||||||| 
seq2  GTTGGTT--GTTGTTTA-TTAATATGTGGCAACAAGGAAGAGACTTTTTT  844

seq1  TGCA  849
      ||||
seq2  TGCA  848