BAC Information

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BAC

Clone NameB6Ng01-095M15
Chromosome16 (Build37)
Map Location 25,857,604 - 25,993,048
singlet/doubletdoublet
Overlap geneTrp63, LOC100043571, Leprel1
Upstream geneLpp, 5430420C16Rik
Downstream geneCldn1, Cldn16, LOC100043057, Il1rap, Gm606
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095M15.bB6Ng01-095M15.g
ACCDH906634DH906635
length1,1351,115
definitionDH906634|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M15, 5' end.DH906635|Mus musculus domesticus DNA, BAC clone: B6Ng01-095M15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,991,892 - 25,993,048)(25,857,604 - 25,858,729)
sequence
gaattctcttccgtggcataaaattctgctctcaccttcccacgtgatcc
taagtaagtctgtgtaggtaccactcttcacaaacaagatcgtgtctgtg
tctttgcaggaaagctataatgctggagtcaaacattatgaagctgatga
ctttgaatccgcaatcaagtactttgaacaagctttaagagagtatttca
atgaagacatggagtgccgtgctctatgtgaggggcctcagagatttgag
gaatatgagtacttagggtataaaggtggtctttacgaggcaatcgcagg
taaagcttcttttgattctttgattgcttactttaaagtgctatagacat
gtgaatattctgacaatatagtgcatagtagtaagtattgtaaaatgtta
aagattctcatgggtttattccactctgtcttctgttgataatgtctata
gttaaaatgttgttgattctttcttcccaatttcttctgttggatttatt
aataattgcatatttacttatttcatcaatataatagggaactactgtaa
gcattataagtaattttttcaacatattgctttttattttattttatgct
taccaacaaaatgtggcctgctcatgtaagtacatgtgaattcacttttt
gtgtttagtggctagataacacccacgatatgggggcaccatcattttaa
atgttagcctttactgaacacaatgaaaagggttgcagcttttcattatt
gtaaataatatagcaataaacccttcaatacattctaaagcaattcattg
gcttatgatacttgagaatgttgtttcaagagtaggcatgtgtgtgacac
tcaagagttgctgatactaggtaagtaaccttttattggaagagtatgtt
ttctgtatataccatatttgaaaataacttatttgtattaacatatatta
taaaaatacattttcagagtacgtgtatatataatacagggatgtggaag
tgctttcatagagaacaaagccagaatcaagttgaaacgtatatcatgtg
ctaacctattcatgctctactctaacaaaggattcaagctccactaagtt
gccagctggctgaacttattcttagcatttagcag
gaattccacagctagataaaatagaatatggcatatgcaaatccatgcac
actattcaacagtatcactaaaggacattgtgtaatgttctgccaatttg
tgtggaattccacgaatatgaaactatattgagcggaaagcaagcagatg
gttgcttggaactaggggttggaggatagggtagtcacaaaggcaaagag
tctttgagaagtgatgggagctcttctctatatagaatgtgactctgatt
attcaactctgtactcttcaaaagtcaccaagttaaacagtttaaaactg
ctagagtttacagaaaatgatatatcagtaaagctgattgatgaaaaaaa
tctacgtggaaaaaaaatttaaatgaataaattaggctttggagttcaga
aacctcaagccagagttgaagatcaaattagagattaattttggaaatcc
cagaaacaaagaatcatattgaaaacactgtatgtgttcaaattttagtt
tttgccaacatgaatcaccatggtgtttaaaaatattgacgtaaatccac
atcccatttttgctatcttgtataaatgtggaaagcagggaaagatgaca
agtctatttgctaaggggataaaggaggaagctaagtctgagggattatt
aatcacgataggttagagagactgagtttagaaccagaaagtcatacgga
aatcatggtgtcatcaggactcatttgctagcagtgaaggaaatggaggg
atggagacttgactctgcaaagaaggtctctgcattcctacagcttctgt
actgtgggtcttgggttcaaccagatgcagtcaatataatacagctggcc
ctggtcagatggtttgatttggtcaaagaggaaactctgcagcagcactg
gagaattatggaaaggtagcatcccaaatgtggggctatctggaaatctc
taaattgctctggcagaacgtagagaacaaagggaaagcagatcatacca
gatgagaacagcacactgaatgtgaggcagaccgtaatgtgcttaaagag
tgggtgaaagttggaatcaaaagctgaaggtgctaaaggctacatggtta
gagagaacatattgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_25991892_25993048
seq2: B6Ng01-095M15.b_48_1182 (reverse)

seq1  CTGCTAAAATTGCT-AGAATGAGTTCAAGGCCAGCCTGGGCAACTTAGTG  49
      ||||||||  |||| ||||| ||||||  ||||||   ||||||||||||
seq2  CTGCTAAA--TGCTAAGAATAAGTTCA--GCCAGC--TGGCAACTTAGTG  44

seq1  GAGCTTGAATCCTTTGTTAAGAAGTAGAAGCATGGATAGGGTTTTAGCAC  99
      |||||||||||||||||||   ||||| |||||| |||||   |||||||
seq2  GAGCTTGAATCCTTTGTTA--GAGTAG-AGCATGAATAGG---TTAGCAC  88

seq1  AATGATATTACCGTTTCCACTTGATTCTGCCTTTTGTTCTCTATGAAAGC  149
       |||||||   |||||| ||||||||||| | ||||||||||||||||||
seq2  -ATGATAT--ACGTTTCAACTTGATTCTGGC-TTTGTTCTCTATGAAAGC  134

seq1  AC-TCCACATCCCCTGTATTATATATACACGTACTCCTGAAAATTGTATT  198
      || ||||||| |||||||||||||||||||||||| ||||||| ||||||
seq2  ACTTCCACAT-CCCTGTATTATATATACACGTACT-CTGAAAA-TGTATT  181

seq1  TTTATAATTATATTGTTAATACAAATAAGTTATTTTCAAATATGGTATAT  248
      ||||||| |||| |||||||||||||||||||||||||||||||||||||
seq2  TTTATAA-TATA-TGTTAATACAAATAAGTTATTTTCAAATATGGTATAT  229

seq1  ACAGAAAACATACTTCTTCCAATAAAAGGTTACTTACCTAGTATCAGCAA  298
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  ACAGAAAACATAC-TCTTCCAATAAAAGGTTACTTACCTAGTATCAGCAA  278

seq1  CTCTTGAGTGTCACACACATTGCCTACTCTTTGAAACAACATTCTCAAGT  348
      ||||||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  CTCTTGAGTGTCACACACA-TGCCTACTC-TTGAAACAACATTCTCAAGT  326

seq1  ATCATAAGCCAATGAATTGCTTTAGAATGTATTGAAGGGTTTATTGCTAT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAGCCAATGAATTGCTTTAGAATGTATTGAAGGGTTTATTGCTAT  376

seq1  ATTATTTACAATAATGAAAAGCTGCAACCCTTTTCATTGTGTTCAGTAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTACAATAATGAAAAGCTGCAACCCTTTTCATTGTGTTCAGTAAA  426

seq1  GGCTAACATTTAAAATGATGGTGCCCCCATATCGTGGGTGTTATCTAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAACATTTAAAATGATGGTGCCCCCATATCGTGGGTGTTATCTAGCC  476

seq1  ACTAAACACAAAAAGTGAATTCACATGTACTTACATGAGCAGGCCACATT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAACACAAAAAGTGAATTCACATGTACTTACATGAGCAGGCCACATT  526

seq1  TTGTTGGTAAGCATAAAATAAAATAAAAAGCAATATGTTGAAAAAATTAC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGTAAGCATAAAATAAAATAAAAAGCAATATGTTGAAAAAATTAC  576

seq1  TTATAATGCTTACAGTAGTTCCCTATTATATTGATGAAATAAGTAAATAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAATGCTTACAGTAGTTCCCTATTATATTGATGAAATAAGTAAATAT  626

seq1  GCAATTATTAATAAATCCAACAGAAGAAATTGGGAAGAAAGAATCAACAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTATTAATAAATCCAACAGAAGAAATTGGGAAGAAAGAATCAACAA  676

seq1  CATTTTAACTATAGACATTATCAACAGAAGACAGAGTGGAATAAACCCAT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTAACTATAGACATTATCAACAGAAGACAGAGTGGAATAAACCCAT  726

seq1  GAGAATCTTTAACATTTTACAATACTTACTACTATGCACTATATTGTCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAATCTTTAACATTTTACAATACTTACTACTATGCACTATATTGTCAG  776

seq1  AATATTCACATGTCTATAGCACTTTAAAGTAAGCAATCAAAGAATCAAAA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCACATGTCTATAGCACTTTAAAGTAAGCAATCAAAGAATCAAAA  826

seq1  GAAGCTTTACCTGCGATTGCCTCGTAAAGACCACCTTTATACCCTAAGTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTTTACCTGCGATTGCCTCGTAAAGACCACCTTTATACCCTAAGTA  876

seq1  CTCATATTCCTCAAATCTCTGAGGCCCCTCACATAGAGCACGGCACTCCA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATTCCTCAAATCTCTGAGGCCCCTCACATAGAGCACGGCACTCCA  926

seq1  TGTCTTCATTGAAATACTCTCTTAAAGCTTGTTCAAAGTACTTGATTGCG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTTCATTGAAATACTCTCTTAAAGCTTGTTCAAAGTACTTGATTGCG  976

seq1  GATTCAAAGTCATCAGCTTCATAATGTTTGACTCCAGCATTATAGCTTTC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTCAAAGTCATCAGCTTCATAATGTTTGACTCCAGCATTATAGCTTTC  1026

seq1  CTGCAAAGACACAGACACGATCTTGTTTGTGAAGAGTGGTACCTACACAG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAAAGACACAGACACGATCTTGTTTGTGAAGAGTGGTACCTACACAG  1076

seq1  ACTTACTTAGGATCACGTGGGAAGGTGAGAGCAGAATTTTATGCCACGGA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACTTAGGATCACGTGGGAAGGTGAGAGCAGAATTTTATGCCACGGA  1126

seq1  AGAGAATTC  1157
      |||||||||
seq2  AGAGAATTC  1135

seq1: chr16_25857604_25858729
seq2: B6Ng01-095M15.g_69_1183

seq1  GAATTCCACAGCTAGATAAAATAGAATATGGCATATGCAAATCCATGCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAGCTAGATAAAATAGAATATGGCATATGCAAATCCATGCAC  50

seq1  ACTATTCAACAGTATCACTAAAGGACATTGTGTAATGTTCTGCCAATTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCAACAGTATCACTAAAGGACATTGTGTAATGTTCTGCCAATTTG  100

seq1  TGTGGAATTCCACGAATATGAAACTATATTGAGCGGAAAGCAAGCAGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGAATTCCACGAATATGAAACTATATTGAGCGGAAAGCAAGCAGATG  150

seq1  GTTGCTTGGAACTAGGGGTTGGAGGATAGGGTAGTCACAAAGGCAAAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTTGGAACTAGGGGTTGGAGGATAGGGTAGTCACAAAGGCAAAGAG  200

seq1  TCTTTGAGAAGTGATGGGAGCTCTTCTCTATATAGAATGTGACTCTGATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGAAGTGATGGGAGCTCTTCTCTATATAGAATGTGACTCTGATT  250

seq1  ATTCAACTCTGTACTCTTCAAAAGTCACCAAGTTAAACAGTTTAAAACTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAACTCTGTACTCTTCAAAAGTCACCAAGTTAAACAGTTTAAAACTG  300

seq1  CTAGAGTTTACAGAAAATGATATATCAGTAAAGCTGATTGATGAAAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGTTTACAGAAAATGATATATCAGTAAAGCTGATTGATGAAAAAAA  350

seq1  TCTACGTGGAAAAAAAATTTAAATGAATAAATTAGGCTTTGGAGTTCAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACGTGGAAAAAAAATTTAAATGAATAAATTAGGCTTTGGAGTTCAGA  400

seq1  AACCTCAAGCCAGAGTTGAAGATCAAATTAGAGATTAATTTTGGAAATCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCAAGCCAGAGTTGAAGATCAAATTAGAGATTAATTTTGGAAATCC  450

seq1  CAGAAACAAAGAATCATATTGAAAACACTGTATGTGTTCAAATTTTAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAACAAAGAATCATATTGAAAACACTGTATGTGTTCAAATTTTAGTT  500

seq1  TTTGCCAACATGAATCACCATGGTGTTTAAAAATATTGACGTAAATCCAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCAACATGAATCACCATGGTGTTTAAAAATATTGACGTAAATCCAC  550

seq1  ATCCCATTTTTGCTATCTTGTATAAATGTGGAAAGCAGGGAAAGATGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTTTTGCTATCTTGTATAAATGTGGAAAGCAGGGAAAGATGACA  600

seq1  AGTCTATTTGCTAA-GGGATAAAGGAGGAAGCTAAGTCTGAGGGATTATT  649
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  AGTCTATTTGCTAAGGGGATAAAGGAGGAAGCTAAGTCTGAGGGATTATT  650

seq1  AATCACGATAGGTTAGAGAGACTGAGTTTAGAACCAGAAAGTCATACGGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGATAGGTTAGAGAGACTGAGTTTAGAACCAGAAAGTCATACGGA  700

seq1  AATCATGGTGTCATCAGGACTCATTTGCTAGCAGTGAAGGAAATGGAGGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATGGTGTCATCAGGACTCATTTGCTAGCAGTGAAGGAAATGGAGGG  750

seq1  ATGGAGACTTGACTCTGCAAAGAAGGGTCTCTGCATTCCTACAGCTTCTG  799
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ATGGAGACTTGACTCTGCAAAGAA-GGTCTCTGCATTCCTACAGCTTCTG  799

seq1  TACTGTGGGTCTTGGGTTCAACCAGATGCAGTCAATATAATACAGCTGGC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTGGGTCTTGGGTTCAACCAGATGCAGTCAATATAATACAGCTGGC  849

seq1  CCTGGTCAGATGGTTTGATTTGGTCAAAGAGGAAACTCTGCAGCAGCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCAGATGGTTTGATTTGGTCAAAGAGGAAACTCTGCAGCAGCACT  899

seq1  GGAGAA-TATGGAAAGGTAGCATCCCAGATGTGGGGCTATCTGGAGATCT  948
      |||||| |||||||||||||||||||| ||||||||||||||||| ||||
seq2  GGAGAATTATGGAAAGGTAGCATCCCAAATGTGGGGCTATCTGGAAATCT  949

seq1  CTAAATTGCTCTGGCAGAACGTAGAGAACAAAGGGAAAAGCAGATCATAC  998
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CTAAATTGCTCTGGCAGAACGTAGAGAACAAAGGG-AAAGCAGATCATAC  998

seq1  CAGATGAGGAACAGCACACTTGAATTGTGAGGGCAGACAGGTGATGTGCT  1048
      ||||||| ||||||||||| |||| ||||| |||||||  || |||||||
seq2  CAGATGA-GAACAGCACAC-TGAA-TGTGA-GGCAGAC-CGTAATGTGCT  1043

seq1  TAAAGAGTTGGGTTGAAAAGTTTGAATCAGAAGCTGGAGAGGTGGCTTAG  1098
      ||||||| |||||   |||||| |||||| ||||||   |||||   || 
seq2  TAAAGAG-TGGGT--GAAAGTTGGAATCAAAAGCTG--AAGGTG--CTAA  1086

seq1  AGGCTACATGGTTA-AGAGGACATATTGC  1126
      |||||||||||||| |||| |||||||||
seq2  AGGCTACATGGTTAGAGAGAACATATTGC  1115