BAC Information

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BAC

Clone NameB6Ng01-096C09
Chromosome16 (Build37)
Map Location 27,492,295 - 27,493,364
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043057, Il1rap, Gm606, Ostn, Uts2d, Ccdc50
Downstream geneFgf12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096C09.bB6Ng01-096C09.g
ACCDH906892DH906893
length1,0611,179
definitionDH906892|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C09, 5' end.DH906893|Mus musculus domesticus DNA, BAC clone: B6Ng01-096C09, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctaacttcacacggttggggaagtttaccaagatggcttcagagt
agaccaactttacacaagaatttttgtccataggaagctctagggaaatc
tgacaaaaaaagtgttttttctatacaagacctttacacacacacacaca
cacacacacacacacacacacacacacgaacaggtgttttaaaagtttaa
caggcacagattaaattcaaacagtaggttacacagcatgagccaagtcc
catacacagagacgctaatgatgatttttaacagccatactcctctagat
cttgaggtccctattgtctgggttcactactccagggctagtgagtcact
atcaccactgttatttgttaccttgggtggattatcaaataaaaaatgat
gaaataaaataagcactaatacttcatggaaagacataaaaaattaactt
gtaactactatgtagagggttgtctaacgctgtttgtattctaatgctaa
atgctcttctccaagatttggagtcaacacatagcctttgggacctggcc
cccatgttaattctaattggtggcaaaagatgccagcagccaatagtagg
gggcaagagagataggcaatgtttaggttttctgggttagaaaccttgag
gaaggaagaggaggaaaacaagttaccatgggatagtaagaacatacagt
agagaagcaacgagagctgacatggcctctggtcaaagagaacatggctc
agaggtctgactttttggagttaagagcagccaagatgacacatagtaag
taataatggggttactgataagaagtagattctaacagcatggagggtag
gcagttgcctagctattgtgctccttaaagcatattaaagtataaatgtt
gtgtgtgtccttcatctgggaatataatggtttaaggcagtatattttta
aatatttttgtacagactactaaatgtttgatacactatgtctgtacaat
taacacaaacacatgaatagaggttcactggtttaaactataacaactct
tgctctgcttc
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
tttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtactcactgataagtggatattagccccaaacg
taggatacccaagatataagacataatttgctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagagatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatgggtcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcaccctt
ataggggaacaacatatgaactaaccagtacccggagctcttgacttctg
ctgcaattttattaaaagatggctagtcgcatcacttgaagagaggccaa
tgggaccttgcaactttatatgcccagtcagggtaaaccaaggccaaaag
ggggacttggtgggctagtagatgtggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_27492295_27493364
seq2: B6Ng01-096C09.b_45_1105

seq1  GAATTCTAACTTCACACGGTTGGGGAAGTTTACCAAGATGGCTTCAGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAACTTCACACGGTTGGGGAAGTTTACCAAGATGGCTTCAGAGT  50

seq1  AGACCAACTTTACACAAGAATTTTTGTCCATAGGAAGCTCTAGGGAAATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAACTTTACACAAGAATTTTTGTCCATAGGAAGCTCTAGGGAAATC  100

seq1  TGACAAAAAAAGTGTTTTTTCTATACAAGACCTTTACACACACACACACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAAAAAAGTGTTTTTTCTATACAAGACCTTTACACACACACACACA  150

seq1  CACACACACACACACACACACACACACGAACAGGTGTTTTAAAAGTTTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACGAACAGGTGTTTTAAAAGTTTAA  200

seq1  CAGGCACAGATTAAATTCAAACAGTAGGTTACACAGCATGAGCCAAGTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAGATTAAATTCAAACAGTAGGTTACACAGCATGAGCCAAGTCC  250

seq1  CATACACAGAGACGCTAATGATGATTTTTAACAGCCATACTCCTCTAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACACAGAGACGCTAATGATGATTTTTAACAGCCATACTCCTCTAGAT  300

seq1  CTTGAGGTCCCTATTGTCTGGGTTCACTACTCCAGGGCTAGTGAGTCACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGGTCCCTATTGTCTGGGTTCACTACTCCAGGGCTAGTGAGTCACT  350

seq1  ATCACCACTGTTATTTGTTACCTTGGGTGGATTATCAAATAAAAAATGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACCACTGTTATTTGTTACCTTGGGTGGATTATCAAATAAAAAATGAT  400

seq1  GAAATAAAATAAGCACTAATACTTCATGGAAAGACATAAAAAATTAACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAAATAAGCACTAATACTTCATGGAAAGACATAAAAAATTAACTT  450

seq1  GTAACTACTATGTAGAGGGTTGTCTAACGCTGTTTGTATTCTAATGCTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTACTATGTAGAGGGTTGTCTAACGCTGTTTGTATTCTAATGCTAA  500

seq1  ATGCTCTTCTCCAAGATTTGGAGTCAACACATAGCCTTTGGGACCTGGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCTTCTCCAAGATTTGGAGTCAACACATAGCCTTTGGGACCTGGCC  550

seq1  CCCATGTTAATTCTAATTGGTGGCAAAAGATGCCAGCAGCCAATAGTAGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCATGTTAATTCTAATTGGTGGCAAAAGATGCCAGCAGCCAATAGTAGG  600

seq1  GGGCAAGAGAGATAGGCAATGTTTAGGTTTTCTGGGTTAGAAACCTTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAAGAGAGATAGGCAATGTTTAGGTTTTCTGGGTTAGAAACCTTGAG  650

seq1  GAAGGAAGAGGAGGAAAACAAGTTACCATGGGATAGTAAGAACATACAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGAAGAGGAGGAAAACAAGTTACCATGGGATAGTAAGAACATACAGT  700

seq1  AGAGAAGCAACGAGAGCTGACATGGCCTCTGGTCAAAGAGAACATGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAACGAGAGCTGACATGGCCTCTGGTCAAAGAGAACATGGCTC  750

seq1  AGAGGTCTGACTTTTTGGAGTTAAGAGCAGCCAAGATGACACATAGTAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGTCTGACTTTTTGGAGTTAAGAGCAGCCAAGATGACACATAGTAAG  800

seq1  TAATAATGGGGTTACTGATAAGAAGTAGATTCTAACAGCATGGAGGGTAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAATGGGGTTACTGATAAGAAGTAGATTCTAACAGCATGGAGGGTAG  850

seq1  GCAGTTGCCTAGCTATTGTGCTCCTTAAAGCATATTAAAGTATAAATGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGCCTAGCTATTGTGCTCCTTAAAGCATATTAAAGTATAAATGTT  900

seq1  GTGTGTGTCCTTCATCTGGGAATATAAATGGTTTAAGGCAGTATATTTTT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GTGTGTGTCCTTCATCTGGGAATAT-AATGGTTTAAGGCAGTATATTTTT  949

seq1  CAAATA-TTTTGTACAAGACTACTAAATGTTTGATACACTATGTCTGTAA  999
       ||||| |||||||| |||||||||||||||||||||||||||||||| |
seq2  -AAATATTTTTGTAC-AGACTACTAAATGTTTGATACACTATGTCTGT-A  996

seq1  CAATTAACAACAAACACAATGAATAGAGGTTCACTGGTTTAAACTATAAA  1049
      |||||||| |||||||| ||||||||||||||||||||||||||||| ||
seq2  CAATTAAC-ACAAACAC-ATGAATAGAGGTTCACTGGTTTAAACTAT-AA  1043

seq1  CAACCTTCTTGCCTCTGCTTC  1070
      ||||  ||||| |||||||||
seq2  CAAC--TCTTG-CTCTGCTTC  1061