BAC Information

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BAC

Clone NameB6Ng01-096H23
Chromosome16 (Build37)
Map Location 9,034,956 - 9,156,541
singlet/doubletdoublet
Overlap genenone
Upstream gene4930511J11Rik, BC024814, Abat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneGrin2a, LOC665291, LOC100042534
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096H23.bB6Ng01-096H23.g
ACCDH907131DH907132
length1,0791,103
definitionDH907131|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H23, 5' end.DH907132|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(9,034,956 - 9,036,011)(9,155,436 - 9,156,541)
sequence
gaattcacacacacacacacacacacacacacacacacacacacacacac
acacactgaaaccaaacacagacaacagcacaaacatgaagcacagcatt
ggatccatctcaagaaaacccagtaatagtaacttggatttttgtgggag
caagtgtcaatgttgaatgctaattgcttgtgccaagtaagcccaccaga
gacagcaggggcatggtgatggccgcaccgtgggtcatttttgtgggaat
cctgagctcttccttgcaatctgcagtgtccctattcttccacacctctg
cctcaaggagatgtttaaagaaaactattatcaaaactttaaaaagcagg
aaaccaaagcagttcttggaaatgctgaaagtgatctggggtctgctgat
gtggatcatgatggtgcctcccacagggttttcccataccctgaatttct
gaaagttgtccctggcatgagtaggttttctagtttggtcttggattcat
tttcctgaagttcagggctctctctctctctctctttctctctctctctc
tcctcacccttccaccactcgttgttcactctcactgttggtggttggag
cttgacttctatggactgtgttggcaacaattatcccacagtggagggac
aataagtaaagcagaaagctggctgcctcagcctcctgttcacgtcctag
aaactgatccaggtcatcaggccctgcatctctatgaccagagtgaagca
accatggtgaaaccaactgtggtccatctctgctgtagtaggtgggatca
ctttgagggtgcatatatagacattttcttttcaaatagaaacattcctt
tcttggaaggaagggtttccttcagactcaggaagcaaacaaacttttaa
gactcaggaagtttataaaacttacaggacttcctaacgccctccccatt
atggctagattagttagtgagggacttgcctgaggagaggagatccaagc
ttgttaggctgccagaaaagttgttcatggagctctcaaaagacgcagcg
tcgggtgagccattgccccatgtttgccg

gaattccagtgagctttcttcaattagtgagtgcctgtgggccatgatgg
gcctgtgtaacaagaaaagaacagtagcctcccaaagtttattgaggctc
cttgttgcctgattgggtagcctagattaattctaaaattattattgaaa
ccctttgtacatgttcttatacacaagtacctctcagcctggactatacc
ttgatactgtatttgaaaggttttttttaatctgttgttcctgctccaaa
tgaattaagtttgaagcttggaaggtaccaagaacggctatttccagagt
ttcttagagattatgaaatatggccaacattcaggcacttaggctgagga
gatagcccaacaataatgtttactgtcactcttgaggacctgaatttgga
tttccaatattcatataaaaacccagacgtaataataatgctaacactgg
ggaaccagagacaagcagatccctggggcttgctggccaggtagcctaac
tggactggtaagctccaggttcagtgagagaccctatctcaggcaacaca
gcagagaaagatgcctgatgttaacctctggcatctacacgtgtgtgtac
acacaaacatgagcactcatatgcacctatacacatgtatggacacacat
acaaacacatagacatacaaaaataaattctccataacataggggggagt
aattattttggggaatatcagtgaacttcctacagactcccatctccctg
ggggaagcactggcagcttactttgaagctcttgcttcatcttgccccat
ctatgatgaatgaagatcgccagctgtggacatcacactcgaactagaat
atgtacatactctcctcctaaccttctggaacttgggctgggacaagcta
cttgctagggatgctcatcttgtagtgtctaactttggggggccctgact
tgagtagacagaaactagactgcagcaacagaggcacagtcttgcttcct
tgtacccaaagaactagtagctcaaaagaccaaagaactcttggttcaac
ttcaaccatccctgctgaacttggaatctggagacttcctagaatctttc
gtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9034956_9036011
seq2: B6Ng01-096H23.b_48_1126

seq1  GAATTCACACACACACACACACACACACACACACACACACACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACACACACACACACACACACACACACACACACAC  50

seq1  ACACACTGAAACCAAACACAGACAACAGCACAAACATGAAGCACAGCATT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTGAAACCAAACACAGACAACAGCACAAACATGAAGCACAGCATT  100

seq1  GGATCCATCTCAAGAAAACCCAGTAATAGTAACTTGGATTTTTGTGGGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCCATCTCAAGAAAACCCAGTAATAGTAACTTGGATTTTTGTGGGAG  150

seq1  CAAGTGTCAATGTTGAATGCTAATTGCTTGTGCCAAGTAAGCCCACCAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGTCAATGTTGAATGCTAATTGCTTGTGCCAAGTAAGCCCACCAGA  200

seq1  GACAGCAGGGGCATGGTGATGGCCGCACCGTGGGTCATTTTTGTGGGAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGCAGGGGCATGGTGATGGCCGCACCGTGGGTCATTTTTGTGGGAAT  250

seq1  CCTGAGCTCTTCCTTGCAATCTGCAGTGTCCCTATTCTTCCACACCTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGCTCTTCCTTGCAATCTGCAGTGTCCCTATTCTTCCACACCTCTG  300

seq1  CCTCAAGGAGATGTTTAAAGAAAACTATTATCAAAACTTTAAAAAGCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAGGAGATGTTTAAAGAAAACTATTATCAAAACTTTAAAAAGCAGG  350

seq1  AAACCAAAGCAGTTCTTGGAAATGCTGAAAGTGATCTGGGGTCTGCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCAAAGCAGTTCTTGGAAATGCTGAAAGTGATCTGGGGTCTGCTGAT  400

seq1  GTGGATCATGATGGTGCCTCCCACAGGGTTTTCCCATACCCTGAATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGATCATGATGGTGCCTCCCACAGGGTTTTCCCATACCCTGAATTTCT  450

seq1  GAAAGTTGTCCCTGGCATGAGTAGGTTTTCTAGTTTGGTCTTGGATTCAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTGTCCCTGGCATGAGTAGGTTTTCTAGTTTGGTCTTGGATTCAT  500

seq1  TTTCCTGAAGTTCAGGGCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGAAGTTCAGGGCTCTCTCTCTCTCTCTCTTTCTCTCTCTCTCTC  550

seq1  TCCTCACCCTTCCACCACTCGTTGTTCACTCTCACTGTTGGTGGTTGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCACCCTTCCACCACTCGTTGTTCACTCTCACTGTTGGTGGTTGGAG  600

seq1  CTTGACTTCTATGGACTGTGTTGGCAACAATTATCCCACAGTGGAGGGAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGACTTCTATGGACTGTGTTGGCAACAATTATCCCACAGTGGAGGGAC  650

seq1  AATAAGTAAAGCAGAAAGCTGGCTGCCTCAGCCTCCTGTTCACGTCCTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGTAAAGCAGAAAGCTGGCTGCCTCAGCCTCCTGTTCACGTCCTAG  700

seq1  -AACTGATCCAGGTCATCAGGCCCTGCATCTCTATGACCAGAGTGAAGCA  749
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATCCAGGTCATCAGGCCCTGCATCTCTATGACCAGAGTGAAGCA  750

seq1  ACCATGGTGAAACCAACTGTGGTCCATCTCTGCTGTAGTAGGTGGGATCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGGTGAAACCAACTGTGGTCCATCTCTGCTGTAGTAGGTGGGATCA  800

seq1  CTTTGAGGGTGCATATATAGACATTT--CTTTCAAATAGAAACATTCC-T  846
      ||||||||||||||||||||||||||   ||||||||||||||||||| |
seq2  CTTTGAGGGTGCATATATAGACATTTTCTTTTCAAATAGAAACATTCCTT  850

seq1  TCTTGG-AGGAAGG--TTCCTTCAGACTCAGGAAGCAAACAAAC-TTTAA  892
      |||||| |||||||  |||||||||||||||||||||||||||| |||||
seq2  TCTTGGAAGGAAGGGTTTCCTTCAGACTCAGGAAGCAAACAAACTTTTAA  900

seq1  GACTCAGGAAGTTTATAAAACTTACAGGAC-TCCTAACGCCCTCCCCA-T  940
      |||||||||||||||||||||||||||||| ||||||||||||||||| |
seq2  GACTCAGGAAGTTTATAAAACTTACAGGACTTCCTAACGCCCTCCCCATT  950

seq1  ATGGCTAGATTAG-TAGTGA-GGACT--GCTGAGGAGAGGAGATCC-AGC  985
      ||||||||||||| |||||| |||||   ||||||||||||||||| |||
seq2  ATGGCTAGATTAGTTAGTGAGGGACTTGCCTGAGGAGAGGAGATCCAAGC  1000

seq1  -TGTTAGGCTGCCAG-AAAGTTGTTCAGGGAGCTC---AGAGACGCAGCG  1030
       |||||||||||||| ||||||||||| |||||||   | ||||||||||
seq2  TTGTTAGGCTGCCAGAAAAGTTGTTCATGGAGCTCTCAAAAGACGCAGCG  1050

seq1  TC-GGTGAGCCA-TGCCCCATG-TTGCCG  1056
      || ||||||||| ||||||||| ||||||
seq2  TCGGGTGAGCCATTGCCCCATGTTTGCCG  1079


seq1: chr16_9155436_9156541
seq2: B6Ng01-096H23.g_67_1169 (reverse)

seq1  CACGAAAGATCCTAGGAAGTCTCTCAGA-TCCAAGTCCAGCAGGGATGTT  49
      |||||||||| |||||||||||| |||| ||||||| ||||||||||| |
seq2  CACGAAAGATTCTAGGAAGTCTC-CAGATTCCAAGTTCAGCAGGGATGGT  49

seq1  TGAGGTTGAAACCAGAGTTCTTTGGTTCTTTTGAGCTACTAGTTCTTTGG  99
      ||| |||||| | |||||||||||| ||||||||||||||||||||||||
seq2  TGAAGTTGAACCAAGAGTTCTTTGG-TCTTTTGAGCTACTAGTTCTTTGG  98

seq1  GTACAAGGAAGCAAAGACTGTGCCTCCTGTTTGCTGCAGTCTAGTTTTCT  149
      |||||||||||| |||||||||||| ||| |||||||||||||| |||||
seq2  GTACAAGGAAGC-AAGACTGTGCCT-CTG-TTGCTGCAGTCTAG-TTTCT  144

seq1  GTCTACTCAAGTTCAGGGCCCCCCAAAGTTAGACACTACAAGATGAGCAT  199
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GTCTACTCAAG-TCAGGGCCCCCCAAAGTTAGACACTACAAGATGAGCAT  193

seq1  CCCTAGCAAGTAGCTTGTCCCAGCCCAAGTTCCAG-AGGTTAGGAGGAGA  248
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CCCTAGCAAGTAGCTTGTCCCAGCCCAAGTTCCAGAAGGTTAGGAGGAGA  243

seq1  GTATGTACATATTCTAGTTCGAGTGTGATGTCCACAGCTGGCGATCTTCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTACATATTCTAGTTCGAGTGTGATGTCCACAGCTGGCGATCTTCA  293

seq1  TTCATCATAGATGGGGCAAGATGAAGCAAGAGCTTCAAAGTAAGCTGCCA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCATAGATGGGGCAAGATGAAGCAAGAGCTTCAAAGTAAGCTGCCA  343

seq1  GTGCTT-CCCCAGGGAGATGGGAGTCTGTAGGAAGTTCACTGATATTCCC  397
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTCCCCCAGGGAGATGGGAGTCTGTAGGAAGTTCACTGATATTCCC  393

seq1  CAAAATAATTACT-CCCCCTATGTTATGGAGAATTTATTTTTGTATGTCT  446
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CAAAATAATTACTCCCCCCTATGTTATGGAGAATTTATTTTTGTATGTCT  443

seq1  ATGTGTTTGTATGTGTGTCCATACATGTGTATAGGTGCATATGAGTGCTC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTTTGTATGTGTGTCCATACATGTGTATAGGTGCATATGAGTGCTC  493

seq1  ATGTTTGTGTGTACACACACGTGTAGATGCCAGAGGTTAACATCAGGCAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTGTACACACACGTGTAGATGCCAGAGGTTAACATCAGGCAT  543

seq1  CTTTCTCTGCTGTGTTGCCTGAGATAGGGTCTCTCACTGAACCTGGAGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTGCTGTGTTGCCTGAGATAGGGTCTCTCACTGAACCTGGAGCT  593

seq1  TACCAGTCCAGTTAGGCTACCTGGCCAGCAAGCCCCAGGGATCTGCTTGT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAGTCCAGTTAGGCTACCTGGCCAGCAAGCCCCAGGGATCTGCTTGT  643

seq1  CTCTGGTTCCCCAGTGTTAGCATTATTATTACGTCTGGGTTTTTATATGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGTTCCCCAGTGTTAGCATTATTATTACGTCTGGGTTTTTATATGA  693

seq1  ATATTGGAAATCCAAATTCAGGTCCTCAAGAGTGACAGTAAACATTATTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGGAAATCCAAATTCAGGTCCTCAAGAGTGACAGTAAACATTATTG  743

seq1  TTGGGCTATCTCCTCAGCCTAAGTGCCTGAATGTTGGCCATATTTCATAA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGCTATCTCCTCAGCCTAAGTGCCTGAATGTTGGCCATATTTCATAA  793

seq1  TCTCTAAGAAACTCTGGAAATAGCCGTTCTTGGTACCTTCCAAGCTTCAA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAGAAACTCTGGAAATAGCCGTTCTTGGTACCTTCCAAGCTTCAA  843

seq1  ACTTAATTCATTTGGAGCAGGAACAACAGATTAAAAAAAACCTTTCAAAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAATTCATTTGGAGCAGGAACAACAGATTAAAAAAAACCTTTCAAAT  893

seq1  ACAGTATCAAGGTATAGTCCAGGCTGAGAGGTACTTGTGTATAAGAACAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTATCAAGGTATAGTCCAGGCTGAGAGGTACTTGTGTATAAGAACAT  943

seq1  GTACAAAGGGTTTCAATAATAATTTTAGAATTAATCTAGGCTACCCAATC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAAAGGGTTTCAATAATAATTTTAGAATTAATCTAGGCTACCCAATC  993

seq1  AGGCAACAAGGAGCCTCAATAAACTTTGGGAGGCTACTGTTCTTTTCTTG  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAACAAGGAGCCTCAATAAACTTTGGGAGGCTACTGTTCTTTTCTTG  1043

seq1  TTACACAGGCCCATCATGGCCCACAGGCACTCACTAATTGAAGAAAGCTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACAGGCCCATCATGGCCCACAGGCACTCACTAATTGAAGAAAGCTC  1093

seq1  ACTGGAATTC  1106
      ||||||||||
seq2  ACTGGAATTC  1103


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