BAC Information

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BAC

Clone NameB6Ng01-096K07
Chromosome16 (Build37)
Map Location 48,733,556 - 48,876,134
singlet/doubletdoublet
Overlap geneTrat1, EG667501, Retnlb, Retnla, Retnlg
Upstream geneEG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023, Morc1
Downstream gene2310047C04Rik, C330027C09Rik, Myh15, 1700026J12Rik, LOC386061, EG216818, LOC628903, Ift57, LOC667796, LOC100043767, Cd47
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096K07.bB6Ng01-096K07.g
ACCDH907235DH907236
length1,1221,099
definitionDH907235|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K07, 5' end.DH907236|Mus musculus domesticus DNA, BAC clone: B6Ng01-096K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(48,874,988 - 48,876,134)(48,733,556 - 48,734,664)
sequence
gaattcacttgtttatggtaattaaaattagtttattaagttaaaaacat
tcatttgaccggctaaaaatttagtgtcattaagttaaatatgtgtcaaa
ttacttcattttacttgatgtttaaaaaaagattaaagaatccaaatatc
aaaaaaaaggactttacagacctctttaagcatgtctgcccattaaagca
tctccccctacatgtgcatagaagaatcttaccttccattaaacatatcc
agtctccagcaatcttcagaacagtaaatacaccccatctactagtctcc
tttttataaaaacatttcctcatgtctgatccttagctatggtaccctct
gtcaggaatcttttagtataattgtgttcttaggctccttcccattttgt
ccctctagccattgactccagggctgattatagagtaaataatgacataa
gtaaaacttgccttttttatattttttctgctttgagttccactgtgttt
cctattatgtgcatagcagtacctgataagcacagatacataacagcatg
taatcaaatttctattttctatgattattagctttgagaaatctaatgcc
atcaaatagacaagaaaacaatattcttattgtagtaatgatcaacatat
ttgaatttctcttgagttggagctgtcaatattatttaaaattatttttg
gtactccaacattgtaactgaattatagtctcattcacaaacacaaaggc
tcaaaattcaagtccatctacttaaaacacagtcatttccaagtttttgg
gtcatttacttgcttaattcttaattgttttttttttttttttgtttgga
actctgtggttttagttttgtttttgttttctagacgggtttttgtgtgg
ttctgtctgtcctcaaactatctctgtaaatcaagctggccttgaagtca
cagagatctgcctgtctttgcctccccagcattgggatttaagacatgtc
actaccacctcacttgcagtctgtatttttataccaggaattgtaggttt
ttaccaggagataagatacctaatctgatgacagtaagaatgtgcttatt
tgctatctgaaaaggcaactgg
gaattcactcattaatctgagatggcctggagctaacacagttctctcta
cctcagcctcctgcatgctgggtcacagcaatacctctccatgctgtgct
gaggtttattgagttaactgtttgggagacaatgtgggataagcctttag
aatctaaggggtatgcctacttttggtccaattgttgacctttcagagat
ctgacctatggaaattaacaatacaaaaccttatctttaaatatttaatt
cccctttaagcacttaacacaaaaaagaaactagataagtatccagacat
gtcttggaacattctcattaaaatattatttgtgaacacattaaatagaa
gcttgaagtaatttaagtagtcttcaaactcctttaaatgaattatgatt
taatcataaatgagatacaatgcagacatcagaattttgagacagacttg
ggatgaagctcaggatggagcactcgtctttcatctgaaagaccctgtgt
ttgctgcccagaatcatcaaatacaaagctgaatacaggttaatatagtt
aaatgtagtagaactaaagccatagtctcttgatacacaaagagaattta
aataatatgcacaatcccctacttttaagttaaatcagaaaaaaaaaagg
ctgatacacatagatggttatgtccagtaaaatatccaaaaacacagaga
aagttattcatagtgattatctctgactagtagaattttctatgttctta
atttttaattgttgcaaagagcatggatttatttttataacagtttaaaa
aatgataatattatttacattttggaaaaatactcaggattattctaatt
ttcttggcagtgtactttgttttttttaattttttttattacatattttc
ctcaattacatttccaatgcatttctaattatttattcacattgatgaaa
gaagatgtgtttactgattaaacttttaagacactggcttttctctttca
ttcagatttcctatagcacatatgtactttgattttaaaatttgtcctta
taggtatactggttcatttttatttatggcagtaattagttgccaactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_48874988_48876134
seq2: B6Ng01-096K07.b_48_1169 (reverse)

seq1  CCAGTTGCTTTTCTTCCAGATAGCAAAATAAAGCCACATCTCTTACTTGT  50
      |||||||| |   || |||||||| ||||||   ||||| |||||| |||
seq2  CCAGTTGCCT---TTTCAGATAGC-AAATAA--GCACAT-TCTTAC-TGT  42

seq1  CATCAGATTTTAGTATACTTTATCTTCCTGGGTATAAAAACCTACCAAAT  100
      |||||||  ||||  ||  ||||| ||||||   |||||||||||  |||
seq2  CATCAGA--TTAG-GTATCTTATC-TCCTGG---TAAAAACCTAC--AAT  83

seq1  TCCTGGGTATAAAAATTACAGACTTGCAAGTGAGGTGGTAGTGGAACATG  150
      |||| |||||||||| ||||||| |||||||||||||||||||  |||||
seq2  TCCT-GGTATAAAAA-TACAGAC-TGCAAGTGAGGTGGTAGTG--ACATG  128

seq1  TCTTAAATCCCAATGCTGGGGAGGCAGAGACAGGCAGATCTCTGTGACTT  200
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  TCTTAAATCCCAATGCTGGGGAGGCAAAGACAGGCAGATCTCTGTGACTT  178

seq1  CAAGGCCAGCTTGATTTACAGAGATAGTTTGAGGACAGACAGAACCACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCCAGCTTGATTTACAGAGATAGTTTGAGGACAGACAGAACCACAC  228

seq1  AAATAACCCGTCTAGAAAAACAAAAACAAAACTAAAACCACAGAGTTCCA  300
      ||| ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AAA-AACCCGTCTAG-AAAACAAAAACAAAACTAAAACCACAGAGTTCCA  276

seq1  AACAAAAAAAAAAAAAAAAACAATTAAGAATTAAGCAAGTAAATGACCCA  350
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAC-AAAAAAAAAAAAAAAACAATTAAGAATTAAGCAAGTAAATGACCCA  325

seq1  AAAACTTGGAAATGACTGTGTTTTAAGTAGATGGACTTGAATTTTGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTTGGAAATGACTGTGTTTTAAGTAGATGGACTTGAATTTTGAGCC  375

seq1  TTTGTGTTTGTGAATGAGACTATAATTCAGTTACAATGTTGGAGTACCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTGTGAATGAGACTATAATTCAGTTACAATGTTGGAGTACCAA  425

seq1  AAATAATTTTAAATAATATTGACAGCTCCAACTCAAGAGAAATTCAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATTTTAAATAATATTGACAGCTCCAACTCAAGAGAAATTCAAATA  475

seq1  TGTTGATCATTACTACAATAAGAATATTGTTTTCTTGTCTATTTGATGGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGATCATTACTACAATAAGAATATTGTTTTCTTGTCTATTTGATGGC  525

seq1  ATTAGATTTCTCAAAGCTAATAATCATAGAAAATAGAAATTTGATTACAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTTCTCAAAGCTAATAATCATAGAAAATAGAAATTTGATTACAT  575

seq1  GCTGTTATGTATCTGTGCTTATCAGGTACTGCTATGCACATAATAGGAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTATGTATCTGTGCTTATCAGGTACTGCTATGCACATAATAGGAAA  625

seq1  CACAGTGGAACTCAAAGCAGAAAAAATATAAAAAAGGCAAGTTTTACTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGTGGAACTCAAAGCAGAAAAAATATAAAAAAGGCAAGTTTTACTTA  675

seq1  TGTCATTATTTACTCTATAATCAGCCCTGGAGTCAATGGCTAGAGGGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCATTATTTACTCTATAATCAGCCCTGGAGTCAATGGCTAGAGGGACA  725

seq1  AAATGGGAAGGAGCCTAAGAACACAATTATACTAAAAGATTCCTGACAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGGAAGGAGCCTAAGAACACAATTATACTAAAAGATTCCTGACAGA  775

seq1  GGGTACCATAGCTAAGGATCAGACATGAGGAAATGTTTTTATAAAAAGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCATAGCTAAGGATCAGACATGAGGAAATGTTTTTATAAAAAGGA  825

seq1  GACTAGTAGATGGGGTGTATTTACTGTTCTGAAGATTGCTGGAGACTGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAGTAGATGGGGTGTATTTACTGTTCTGAAGATTGCTGGAGACTGGA  875

seq1  TATGTTTAATGGAAGGTAAGATTCTTCTATGCACATGTAGGGGGAGATGC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTAATGGAAGGTAAGATTCTTCTATGCACATGTAGGGGGAGATGC  925

seq1  TTTAATGGGCAGACATGCTTAAAGAGGTCTGTAAAGTCCTTTTTTTTGAT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGGCAGACATGCTTAAAGAGGTCTGTAAAGTCCTTTTTTTTGAT  975

seq1  ATTTGGATTCTTTAATCTTTTTTTAAACATCAAGTAAAATGAAGTAATTT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGATTCTTTAATCTTTTTTTAAACATCAAGTAAAATGAAGTAATTT  1025

seq1  GACACATATTTAACTTAATGACACTAAATTTTTAGCCGGTCAAATGAATG  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATATTTAACTTAATGACACTAAATTTTTAGCCGGTCAAATGAATG  1075

seq1  TTTTTAACTTAATAAACTAATTTTAATTACCATAAACAAGTGAATTC  1147
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAACTTAATAAACTAATTTTAATTACCATAAACAAGTGAATTC  1122

seq1: chr16_48733556_48734664
seq2: B6Ng01-096K07.g_67_1165

seq1  GAATTCACTCATTAATCTGAGATGGCCTGGAGCTAACACAGTTCTCTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCATTAATCTGAGATGGCCTGGAGCTAACACAGTTCTCTCTA  50

seq1  CCTCAGCCTCCTGCATGCTGGGTCACAGCAATACCTCTCCATGCTGTGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCCTCCTGCATGCTGGGTCACAGCAATACCTCTCCATGCTGTGCT  100

seq1  GAGGTTTATTGAGTTAACTGTTTGGGAGACAATGTGGGATAAGCCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTTTATTGAGTTAACTGTTTGGGAGACAATGTGGGATAAGCCTTTAG  150

seq1  AATCTAAGGGGTATGCCTACTTTTGGTCCAATTGTTGACCTTTCAGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTAAGGGGTATGCCTACTTTTGGTCCAATTGTTGACCTTTCAGAGAT  200

seq1  CTGACCTATGGAAATTAACAATACAAAACCTTATCTTTAAATATTTAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTATGGAAATTAACAATACAAAACCTTATCTTTAAATATTTAATT  250

seq1  CCCCTTTAAGCACTTAACACAAAAAAGAAACTAGATAAGTATCCAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTTAAGCACTTAACACAAAAAAGAAACTAGATAAGTATCCAGACAT  300

seq1  GTCTTGGAACATTCTCATTAAAATATTATTTGTGAACACATTAAATAGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGGAACATTCTCATTAAAATATTATTTGTGAACACATTAAATAGAA  350

seq1  GCTTGAAGTAATTTAAGTAGTCTTCAAACTCCTTTAAATGAATTATGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGAAGTAATTTAAGTAGTCTTCAAACTCCTTTAAATGAATTATGATT  400

seq1  TAATCATAAATGAGATACAATGCAGACATCAGAATTTTGAGACAGACTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCATAAATGAGATACAATGCAGACATCAGAATTTTGAGACAGACTTG  450

seq1  GGATGAAGCTCAGGATGGAGCACTCGTCTTTCATCTGAAAGACCCTGTGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGAAGCTCAGGATGGAGCACTCGTCTTTCATCTGAAAGACCCTGTGT  500

seq1  TTGCTGCCCAGAATCATCAAATACAAAGCTGAATACAGGTTAATATAGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTGCCCAGAATCATCAAATACAAAGCTGAATACAGGTTAATATAGTT  550

seq1  AAATGTAGTAGAACTAAAGCCATAGTCTCTTGATACACAAAGAGAATTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTAGTAGAACTAAAGCCATAGTCTCTTGATACACAAAGAGAATTTA  600

seq1  AATAATATGCACAATCCCCTACTTTTAAGTTAAATCAGAAAAAAAAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATATGCACAATCCCCTACTTTTAAGTTAAATCAGAAAAAAAAAAGG  650

seq1  CTGATACACATAGATGGTTATGTCCAGTAAAATATCCAAAAACACAGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATACACATAGATGGTTATGTCCAGTAAAATATCCAAAAACACAGAGA  700

seq1  AAGTTATTCATAGTGATTATCTCTGACTAGTAGAATTTTCTATGTTCTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTCATAGTGATTATCTCTGACTAGTAGAATTTTCTATGTTCTTA  750

seq1  ATTTTTAATTGTTGCAAAGAGCATGGATTTATTTTTATAACAGTTTAAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAATTGTTGCAAAGAGCATGGATTTATTTTTATAACAGTTTAAAA  800

seq1  AATGATAATATTATTTACATTTTGGAAAAATACTCAGGATTATTCTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATAATATTATTTACATTTTGGAAAAATACTCAGGATTATTCTAATT  850

seq1  TTCTTGGCAGTGTACTTTGTTTTTTTTAATTTTTTTTATTACATATTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTGGCAGTGTACTTTGTTTTTTTTAATTTTTTTTATTACATATTTTC  900

seq1  CTCAATTACATTTCCAATGCATTTCTAATTATTTATTCACATTGATGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATTACATTTCCAATGCATTTCTAATTATTTATTCACATTGATGAAA  950

seq1  GAAGATGTGTTTTACTGATTAAACTTTTAAGACACTGGCTTTTCTCTTTC  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATGTG-TTTACTGATTAAACTTTTAAGACACTGGCTTTTCTCTTTC  999

seq1  ATTCAAGATATCCTATAGCACATATGTACTTTGATTTTTAAAAATTTGTC  1050
      |||| |||| ||||||||||||||||||||||||||||  ||||||||||
seq2  ATTC-AGATTTCCTATAGCACATATGTACTTTGATTTT--AAAATTTGTC  1046

seq1  CTTATTAGGTATTACT-GTTCATTTTTATTTTATTGCCAAGTAATTTAAG  1099
      |||| |||||| |||| ||||||||||| ||||| ||  |||||||  ||
seq2  CTTA-TAGGTA-TACTGGTTCATTTTTA-TTTATGGC--AGTAATT--AG  1089

seq1  TTGCAAACTG  1109
      |||| |||||
seq2  TTGCCAACTG  1099