BAC Information

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BAC

Clone NameB6Ng01-096L21
Chromosome16 (Build37)
Map Location 9,594,730 - 9,595,535
singlet/doubletsinglet
Overlap geneGrin2a
Upstream geneAbat, LOC665207, Tmem186, Pmm2, Carhsp1, EG436336, Usp7, LOC665231, 1810013L24Rik, LOC100043106
Downstream geneLOC665291, LOC100042534, 4930517K11Rik, Atf7ip2, Emp2, Tekt5, Nubp1, BC068110, Ciita, LOC669998, Dexi, 4932416N17Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096L21.b
ACCDH907304
length1,126
definitionDH907304|Mus musculus domesticus DNA, BAC clone: B6Ng01-096L21, 5' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcctttgtgttcatcctttctacgactacctagaattttggtgatg
gacagggaacatgcttggatattgattagataatggagttctcaatactc
gtgggccctggtttatggacttcattgaaacattcttcaaagatggctca
cttactaatgtaaggacaactttgatgcattttgatgtgatggttcctga
cgacttacattccatgaactttttgactatggactgtgtctaaatatttg
gaactgtcgagagattcactactgccgttcgtatccccctggctggtgtg
cgtttgtgtgtgtgtgtgaccttttgttttcatttttaaaaaggtggaga
gtgaccaaggagtgatgcctgatgtcaccctctgtgccctctcatcatac
acacacacacacacacacacacacacacacacacacacacatttatacat
attcacacatacatatgcatacatacagaggcacacacatacacacattc
atacacagatagatacatatacacatagacataaatacatattcacacac
atttacacacacatacatctgaatatatacacacacatccttacttcaga
aaagtatctccaattctgccctctgtgggaagttttgaccatgtacatta
tttgtttgatagacctgcccaatctctttcatctttactatttgtatttt
ccaggaagataaacactgggaatctatgtacatttaaaggttccaactct
cattgcaaagttgatcgcctggtctgtgaacctccagccagatggtgcca
atcaaaaacaaaatttgccatagccaagttctgtccacagagcagaaacc
tcagttggaaggtggtgggtaaagaatttgtgtcaagacagcttatctct
gcatctaactggatacatttaattctagtctgatttttattttgtttgtc
acttcttagcattatgcagaaatgggaaaatttctgacatttaaatacag
actattttgttctccccaattcagtctacttgttatccaaaatcttgtac
tatttatcatcataccaccatcaaagaataccttgcctttaagcagaata
tcctcagtgagcttacattcacaggt
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_9594730_9595535
seq2: B6Ng01-096L21.b_362_1170 (reverse)

seq1  ACCTGTGAATGTAAAGGCTCACTGA-GATA-TCTGCTAAAAAGGCAAAGG  48
      ||||||||||||||  ||||||||| |||| ||||||  |||||| ||||
seq2  ACCTGTGAATGTAA--GCTCACTGAGGATATTCTGCT-TAAAGGC-AAGG  46

seq1  TA-TCTTTGATGGTGGTATGATGATAAATAGTACAAGATTTTGGAT-ACA  96
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATTCTTTGATGGTGGTATGATGATAAATAGTACAAGATTTTGGATAACA  96

seq1  AGTAGACTGAATTTGGGAGA--CAAATAGTCTGTATTTAAATGTCAGAA-  143
      ||||||||||||| ||||||   |||||||||||||||||||||||||| 
seq2  AGTAGACTGAATTGGGGAGAACAAAATAGTCTGTATTTAAATGTCAGAAA  146

seq1  -TATTCCATTTCTGCATAATGCTAAGAAGTGACAAACAAAATAAAAATCA  192
       | | |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCATTTCTGCATAATGCTAAGAAGTGACAAACAAAATAAAAATCA  196

seq1  GACTAGAATTAAATGTATCCAGTTAGATGCAGAGATAAGCTGTCTTTGAC  242
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  GACTAGAATTAAATGTATCCAGTTAGATGCAGAGATAAGCTGTC-TTGAC  245

seq1  ACAAATTCTTTACCCACCACCTTCCAACTGAGGTTTCTGCTCTGTGGACA  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTCTTTACCCACCACCTTCCAACTGAGGTTTCTGCTCTGTGGACA  295

seq1  GAACTTGGCTATGGCAAATTTTGTTTTTGATTGGCACCATCTGGCTGGAG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTGGCTATGGCAAATTTTGTTTTTGATTGGCACCATCTGGCTGGAG  345

seq1  GTTCACAGACCAGGCGATCAACTTTGCAATGAGAGTTGGAACCTTTAAAT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAGACCAGGCGATCAACTTTGCAATGAGAGTTGGAACCTTTAAAT  395

seq1  GTACATAGATTCCCAGTGTTTATCTTCCTGGAAAATACAAATAGTAAAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATAGATTCCCAGTGTTTATCTTCCTGGAAAATACAAATAGTAAAGA  445

seq1  TGAAAGAGATTGGGCAGGTCTATCAAACAAATAATGTACATGGTCAAAAC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGAGATTGGGCAGGTCTATCAAACAAATAATGTACATGGTCAAAAC  495

seq1  TTCCCACAGAGGGCAGAATTGGAGATACTTTTCTGAAGTAAGGATGTGTG  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACAGAGGGCAGAATTGGAGATACTTTTCTGAAGTAAGGATGTGTG  545

seq1  TGTATATATTCAGATGTATGTGTGTGTAAATGTGTGTGAATATGTATTTA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATATTCAGATGTATGTGTGTGTAAATGTGTGTGAATATGTATTTA  595

seq1  TGTCTATGTGTATATGTATCTATCTGTGTATGAATGTGTGTATGTGTGTG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTATGTGTATATGTATCTATCTGTGTATGAATGTGTGTATGTGTGTG  645

seq1  CCTCTGTATGTATGCATATGTATGTGTGAATATGTATAAATGTGTGTGTG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTATGTATGCATATGTATGTGTGAATATGTATAAATGTGTGTGTG  695

seq1  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGAGAGGGCACAG  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTATGATGAGAGGGCACAG  745

seq1  AGGGTGACATCAGGCATCACTCCTTGGTCACTCTCCACCTTTTTAAAAAT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACATCAGGCATCACTCCTTGGTCACTCTCCACCTTTTTAAAAAT  795

seq1  GAAAACAAAAGGTC  806
      ||||||||||||||
seq2  GAAAACAAAAGGTC  809