BAC Information

Click to search

BAC

Clone NameB6Ng01-097A17
Chromosome16 (Build37)
Map Location 29,700,432 - 29,865,908
singlet/doubletdoublet
Overlap genenone
Upstream geneFgf12, 1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneGm1968, LOC100043102, 9030404E10Rik, Hes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097A17.bB6Ng01-097A17.g
ACCDH907522DH907523
length9331,148
definitionDH907522|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A17, 5' end.DH907523|Mus musculus domesticus DNA, BAC clone: B6Ng01-097A17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,700,432 - 29,701,355)(29,864,761 - 29,865,908)
sequence
gaattcctggaaagcttttggcttaagatgaagaagccagtgctagggtg
gagccagctctgaaactatgctcaaaacaaaatagactgcatctcacaga
actactgctatgaaatataatgtggtgaagtgggtacctttggtgagtcc
ataccaaggtgtacccctgagtaatattacaccgtgcaccagacacaggg
taaaagaggttaactgaggagtggggaggagtgagggcctgggaaagggg
tagagacagacaagtggacaagtaaacagacagacaaacagacaagagca
gaaccatgtgggcagagagagagagcaaagagagaaaagagagaaaagga
gggaggggcacccacaaggagcaaatagagcagacactgggaacagagaa
aactggagtggctaatgggtccttttaatccatagcacacacctgttgta
cctggtggtggcagctggtcatgacgtaagcaattgctaggttcctaggg
gcaggccagcagaatcatctatatgctaacaactactactatagttttga
agtatcatccattggccaaaatgaagcaaaacttagttctttctgttaga
tttactggtaaattttgaagtctgtgttcctcagcatgaaacccttaacc
aaagttcaccattcacgtggtttctcactggaggaccgtttgaaatggca
agctcccgactcagcgtgcatagcttctggctgctttgtattctgtgatg
gaaagcgtgttttcgaaggcatgaatgatcctgtgaggaggcggaagcag
tacaatgtgactgaggaatttaacaaaatacaaatctaaaatgtagcaac
cccttccccagaatctagctttctatcttttcatataaatcttttttaaa
tgggaggggaagggaaaaggggggagagagatg
gaattctcagtctcttctgcctggccccacaataatgacgatgatgatgg
tgatgatagcaataatagcaaccgtaatagcctgtattcttttcactccg
aatagtagcgccattgcacatgtgttaactcacaaagttctcacagtcac
tgcattgtatgccgagagcagtgagcttattattttcattttgttgaaga
ggaagcaagggagggtgaaagcaacgtgctcaaggtcacacggctggcat
gacagagtcaggccaccttcctgttgggtttgtggtgctcagtagcctta
tgctgaccttggcaaggactttgaggtgaccctgattaccatcaacagaa
cttccagtcctcgccctatactggtggcatctggctgtgggtcctgacac
ttgtgatctgaacaggacttatttaccttctagaaacctccagggattcg
gtttctttttaatgtcatttgaagtcaagccgggttgaggctgcagaagg
atgaggcggtttgcttcctgtccaatgatgaaaaagctcggggaagcact
gagtcatagctacatccaggccacacatcaccgtacctccccgctgaggc
tgagagcgctgctgggttgtttatctcgctgctcaggactggaggggctg
aaagacggaagacagtgtgatttgtctgctgccgagtaactataattcac
aatacgagtagcattattccaccagagtgctagagggcacagggcctagg
aggttctgcacagcttgtgccttctaaaagaacagcagggatttcatggt
atctgatcgggtcctgatttgatagggaatgagtaaggaagggtgttcta
ggagaaagggacagcctggctaaagcatagaaggaccatgtgggggaagg
gagatgaagtacacgggttagcacaaatctaattctgtgtatagctagta
catttctatgagctaacaggtcatggtaagacaaactccaatgatgcacg
cgtacgcatgcacagcacacaccaccactcatttggcttaggtttctgga
ttatctaaagtcactcaaaacagtagcgcacaatgcactctcctgagctt
atttcatacaaaaaggaaatgcactattctcactagaagacctttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_29700432_29701355
seq2: B6Ng01-097A17.b_43_975

seq1  GAATTCCTGGAAAGCTTTTGGCTTAAGATGAAGAAGCCAGTGCTAGGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGAAAGCTTTTGGCTTAAGATGAAGAAGCCAGTGCTAGGGTG  50

seq1  GAGCCAGCTCTGAAACTATGCTCAAAACAAAATAGACTGCATCTCACAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCAGCTCTGAAACTATGCTCAAAACAAAATAGACTGCATCTCACAGA  100

seq1  ACTACTGCTATGAAATATAATGTGGTGAAGTGGGTACCTTTGGTGAGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTGCTATGAAATATAATGTGGTGAAGTGGGTACCTTTGGTGAGTCC  150

seq1  ATACCAAGGTGTACCCCTGAGTAATATTACACCGTGCACCAGACACAGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACCAAGGTGTACCCCTGAGTAATATTACACCGTGCACCAGACACAGGG  200

seq1  TAAAAGAGGTTAACTGAGGAGTGGGGAGGAGTGAGGGCCTGGGAAAGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGAGGTTAACTGAGGAGTGGGGAGGAGTGAGGGCCTGGGAAAGGGG  250

seq1  TAGAGACAGACAAGTGGACAAGTAAACAGACAGACAAACAGACAAGAGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGACAGACAAGTGGACAAGTAAACAGACAGACAAACAGACAAGAGCA  300

seq1  GAACCATGTGGGCAGAGAGAGAGAGCAAAGAGAGAAAAGAGAGAAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCATGTGGGCAGAGAGAGAGAGCAAAGAGAGAAAAGAGAGAAAAGGA  350

seq1  GGGAGGGGCACCCACAAGGAGCAAATAGAGCAGACACTGGGAACAGAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGGGCACCCACAAGGAGCAAATAGAGCAGACACTGGGAACAGAGAA  400

seq1  AACTGGAGTGGCTAATGGGTCCTTTTAATCCATAGCACACACCTGTTGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGAGTGGCTAATGGGTCCTTTTAATCCATAGCACACACCTGTTGTA  450

seq1  CCTGGTGGTGGCAGCTGGTCATGACGTAAGCAATTGCTAGGTTCCTAGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTGGTGGCAGCTGGTCATGACGTAAGCAATTGCTAGGTTCCTAGGG  500

seq1  GCAGGCCAGCAGAATCATCTATATGCTAACAACTACTACTATAGTTTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGCCAGCAGAATCATCTATATGCTAACAACTACTACTATAGTTTTGA  550

seq1  AGTATCATCCATTGGCCAAAATGAAGCAAAACTTAGTTCTTTCTGTTAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATCATCCATTGGCCAAAATGAAGCAAAACTTAGTTCTTTCTGTTAGA  600

seq1  TTTACTGGTAAATTTTGAAGTCTGTGTTCCTCAGCATGAAACCCTTAACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTGGTAAATTTTGAAGTCTGTGTTCCTCAGCATGAAACCCTTAACC  650

seq1  AAAGTTCACCATTCACGTGGTTTCTCACTGGAGGACCGTTTGAAATGGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCACCATTCACGTGGTTTCTCACTGGAGGACCGTTTGAAATGGCA  700

seq1  AGCTCCCGACTCAGCGTGCATAGCTTCTGGCTGCTTTGTATTCTGTGATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCGACTCAGCGTGCATAGCTTCTGGCTGCTTTGTATTCTGTGATG  750

seq1  GAAAGCGTG-TTTCGAAGGCATGAATGATCCTGTGAGGAGGCGGAAGCAG  799
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCGTGTTTTCGAAGGCATGAATGATCCTGTGAGGAGGCGGAAGCAG  800

seq1  TACAATGTGACTGAGGAATTTAAC-AAATAC-AATCTAAAATGTAGCAAC  847
      |||||||||||||||||||||||| |||||| ||||||||||||||||||
seq2  TACAATGTGACTGAGGAATTTAACAAAATACAAATCTAAAATGTAGCAAC  850

seq1  CCCTTCCCCAGAATCTAGCTTTCTATC-TTTCATAT-AATC-TTTTTAAA  894
      ||||||||||||||||||||||||||| |||||||| |||| ||||||||
seq2  CCCTTCCCCAGAATCTAGCTTTCTATCTTTTCATATAAATCTTTTTTAAA  900

seq1  TGG--AGGGAAGGG-AAAGGGGGGAGAGAGATG  924
      |||   |||||||| ||||||||||||||||||
seq2  TGGGAGGGGAAGGGAAAAGGGGGGAGAGAGATG  933

seq1: chr16_29864761_29865908
seq2: B6Ng01-097A17.g_67_1214 (reverse)

seq1  ACCAAAGTTAT--TAGTGAAGAATAGTGCA-TTCCATTTTGTGTTGAAAT  47
      ||||||| | |  ||||| ||||||||||| |||| ||||||  ||||||
seq2  ACCAAAGGTCTTCTAGTG-AGAATAGTGCATTTCCTTTTTGT-ATGAAAT  48

seq1  AAGGCTCAGGGAAGTGCATTGTGCGCTACTG-TTTGAGTGACTTTAGGAT  96
      || |||||||  ||||||||||||||||||| |||||||||||||| |||
seq2  AA-GCTCAGGAGAGTGCATTGTGCGCTACTGTTTTGAGTGACTTTA-GAT  96

seq1  AATCCAGAAACCT-AGCCAAATGTGTGTGTGTGTGTGTG-TGTGCATGCG  144
      ||||||||||||| ||||||||| ||| ||| ||||||| ||||||||||
seq2  AATCCAGAAACCTAAGCCAAATGAGTG-GTG-GTGTGTGCTGTGCATGCG  144

seq1  TACGCGTGCATCA-TGGAGTTTGTCTTACCATGACCTGTTAGCTCATAGA  193
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TACGCGTGCATCATTGGAGTTTGTCTTACCATGACCTGTTAGCTCATAGA  194

seq1  AATGTACTAGCTATACACAGAATTAGATTTGTGCTAACCCGTGTACTTCA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTACTAGCTATACACAGAATTAGATTTGTGCTAACCCGTGTACTTCA  244

seq1  TCTCCCTTCCCCCACATGGTCCTTCTATGCTTTAGCCCAGGCTGTCCCTT  293
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TCTCCCTTCCCCCACATGGTCCTTCTATGCTTTAG-CCAGGCTGTCCCTT  293

seq1  TCTCCTAGAACACCCTTCCTTACTCATTCCCTATCAAATCAGGACCCGAT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTAGAACACCCTTCCTTACTCATTCCCTATCAAATCAGGACCCGAT  343

seq1  CAGATACCATGAAATCCCTGCTGTTCTTTTAGAAGGCACAAGCTGTGCAG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATACCATGAAATCCCTGCTGTTCTTTTAGAAGGCACAAGCTGTGCAG  393

seq1  AACCTCCTAGGCCCTGTGCCCTCTAGCACTCTGGTGGAATAATGCTACTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTCCTAGGCCCTGTGCCCTCTAGCACTCTGGTGGAATAATGCTACTC  443

seq1  GTATTGTGAATTATAGTTACTCGGCAGCAGACAAATCACACTGTCTTCCG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGTGAATTATAGTTACTCGGCAGCAGACAAATCACACTGTCTTCCG  493

seq1  TCTTTCAGCCCCTCCAGTCCTGAGCAGCGAGATAAACAACCCAGCAGCGC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAGCCCCTCCAGTCCTGAGCAGCGAGATAAACAACCCAGCAGCGC  543

seq1  TCTCAGCCTCAGCGGGGAGGTACGGTGATGTGTGGCCTGGATGTAGCTAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTCAGCGGGGAGGTACGGTGATGTGTGGCCTGGATGTAGCTAT  593

seq1  GACTCAGTGCTTCCCCGAGCTTTTTCATCATTGGACAGGAAGCAAACCGC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCAGTGCTTCCCCGAGCTTTTTCATCATTGGACAGGAAGCAAACCGC  643

seq1  CTCATCCTTCTGCAGCCTCAACCCGGCTTGACTTCAAATGACATTAAAAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCCTTCTGCAGCCTCAACCCGGCTTGACTTCAAATGACATTAAAAA  693

seq1  GAAACCGAATCCCTGGAGGTTTCTAGAAGGTAAATAAGTCCTGTTCAGAT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCGAATCCCTGGAGGTTTCTAGAAGGTAAATAAGTCCTGTTCAGAT  743

seq1  CACAAGTGTCAGGACCCACAGCCAGATGCCACCAGTATAGGGCGAGGACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAGTGTCAGGACCCACAGCCAGATGCCACCAGTATAGGGCGAGGACT  793

seq1  GGAAGTTCTGTTGATGGTAATCAGGGTCACCTCAAAGTCCTTGCCAAGGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTTCTGTTGATGGTAATCAGGGTCACCTCAAAGTCCTTGCCAAGGT  843

seq1  CAGCATAAGGCTACTGAGCACCACAAACCCAACAGGAAGGTGGCCTGACT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATAAGGCTACTGAGCACCACAAACCCAACAGGAAGGTGGCCTGACT  893

seq1  CTGTCATGCCAGCCGTGTGACCTTGAGCACGTTGCTTTCACCCTCCCTTG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATGCCAGCCGTGTGACCTTGAGCACGTTGCTTTCACCCTCCCTTG  943

seq1  CTTCCTCTTCAACAAAATGAAAATAATAAGCTCACTGCTCTCGGCATACA  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTCTTCAACAAAATGAAAATAATAAGCTCACTGCTCTCGGCATACA  993

seq1  ATGCAGTGACTGTGAGAACTTTGTGAGTTAACACATGTGCAATGGCGCTA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGTGACTGTGAGAACTTTGTGAGTTAACACATGTGCAATGGCGCTA  1043

seq1  CTATTCGGAGTGAAAAGAATACAGGCTATTACGGTTGCTATTATTGCTAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATTCGGAGTGAAAAGAATACAGGCTATTACGGTTGCTATTATTGCTAT  1093

seq1  CATCACCATCATCATCGTCATTATTGTGGGGCCAGGCAGAAGAGACTGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCACCATCATCATCGTCATTATTGTGGGGCCAGGCAGAAGAGACTGAG  1143

seq1  AATTC  1148
      |||||
seq2  AATTC  1148