BAC Information

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BAC

Clone NameB6Ng01-097N23
Chromosome16 (Build37)
Map Location 66,625,536 - 66,792,842
singlet/doubletdoublet
Overlap geneCadm2
Upstream geneEG383186, Vgll3, LOC664846, LOC100039035
Downstream gene9330155M09Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097N23.bB6Ng01-097N23.g
ACCDH908126DH908127
length1,1331,068
definitionDH908126|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N23, 5' end.DH908127|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,791,724 - 66,792,842)(66,625,536 - 66,626,601)
sequence
gaattcatcttcaagatcttttcaagtacaacagagaaagtagttttcgt
tttgacatcgggttatgtgagacttcgtctcccttggtctctctattttg
tttggataacttttgaagttggtttaaaatcaaaaaaaaaaaattctctt
gaacaatagaaaatgtgaaggggatttgattacttaactttaacataaaa
gcgaggcaagccataatatcccctggtttcaggttttaaactttatatta
tgaagtgagccacacagttattttttcccaaaggtctgttagcaattaac
aactgtaggaaggaacagactcattttcttcagttatgtagctgctaata
agttgcttgtgctgaagtaaataacctttcacccactcgtaggcaagaaa
atctaattaaactcagtggatcacacagtataaaataaaagaaggacgta
ttgggaaataaaagggtttcatggggagagaaagaagaatgaggggaaag
aattgtggtgaattagaacaatatttattctatgtacatatgtaaaattt
caaaagcatttaaaatgagaattggttattccaagagtaaagtgttccgc
tttagaaaatggggtacacagaacttctgttaaacagtaatcacattcat
caacacctcagaatgctgtcttctccattatgacactaaagccaagacta
ggtcactttgtacattcagcttctgcacatctacagagactacatcgagt
cttcttttaggatatccagcagtgtttgtattgttagaaacatttagact
acatacctcgatttgctaattgggattattatttgaggcatcaagaatta
cttttacaaatcccatagtctagtaatattcatcaataaaatgtattaat
agatgatgttcatattgagttctgctgatctgtttattattagagaacat
aaggatcaaacagaaggaggatgttctcatatcacacatattttctgacc
aggttctccatgataatgggacggacagcacttctccacaccgaaaaagc
ctgtataagacccgctttgttttcccaggtgtgggaaatagtgcaaatag
atgtacagaaaattcttatctctagttgctggc
gaattctgaggtgttttttggcttttggtttttttgtttgtttgtttgtt
tgtttgctttgtttttttgttttattctatacttatcatttatattccat
tttctagtgctcaaatatttacccttatcagtagtttagaatcttttaag
atacattgaataatgtgatttcctatgtatattttcccaccattttcata
tggtcttaatattttctgacttgtgggttaaatttgcttaggaattcatc
ttttctggtagaagacatgcatgcttttagagacccagtaacagaatatg
ccttaaaccagaaagttaaataactataattaaatttttgtagacatatg
ccatcaaatgttaattctaaattagttggaaatattaagattaagatggg
ttgagtgacctagccaaccacacaccactgcttagcaatactgtatactg
tagagtgctggttagatgctctcaggatcccatggatggctgggaactat
ggctcactgctcacaattagaattacaccagagcactatttcctatgacc
agtccgggaaaatataaaaattcagaaaacgacttgtagttttactgtat
gtgtgtggcttttaaaatactggaaagtcaaaatgctagaaagatattgg
aaattgagcaggcttgtgctctaaaactttaattcattcatgttttattt
aatccgcaagcattgcctggcttctaccatatgctggcctgtaaaataga
tactaggaatttaaaatgtcttttctgtttatcacaaagttcttttcttt
tcctctgttataggcagagattcagtacatttattgtgctaacagttcct
atttgtccataaaagagagcaagataaacacagtgcagacatctcctgag
gtgattaaatagcactcaagcaaccgtgtatctgagctccgtttgctctc
tcaaggtataacagatcaaacagccctggaatgacctgtgatgtcagttt
actattgcttcagtcctgaatttctgctttgtaaacagcatgatgagcca
gctattcatttcctcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66791724_66792842
seq2: B6Ng01-097N23.b_46_1178 (reverse)

seq1  GCCAGCAACT-TAGATAAGACATCTCTTTACATCTA-TTGCACTATT---  45
      ||||||||||  ||||||||  | ||| |||||||| ||||||||||   
seq2  GCCAGCAACTAGAGATAAGAATTTTCTGTACATCTATTTGCACTATTTCC  50

seq1  CACA-CTGGG--AACACAGCGGGTCTTATACAG--CTTTTCTGTGTGGAG  90
      |||| |||||  |||| ||||||||||||||||   ||||| ||||||||
seq2  CACACCTGGGAAAACAAAGCGGGTCTTATACAGGCTTTTTCGGTGTGGAG  100

seq1  -AGTGCTGTCCGTTCCA-TATCATGGAGAACCCTGGTCAG-AAATATGTG  137
       |||||||||||| ||| |||||||||||| ||||||||| |||||||||
seq2  AAGTGCTGTCCGTCCCATTATCATGGAGAA-CCTGGTCAGAAAATATGTG  149

seq1  TGATATGAG-ACATCCT-CTTCTGTTTGATCCTTATGTTCTCTAATAATA  185
      ||||||||| ||||||| ||||||||||||||||||||||||||||||||
seq2  TGATATGAGAACATCCTCCTTCTGTTTGATCCTTATGTTCTCTAATAATA  199

seq1  AACAGATCAGCAGAACTCAATATGAACATCATCTATTAATACATTTTATT  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGATCAGCAGAACTCAATATGAACATCATCTATTAATACATTTTATT  249

seq1  GATGAATATTACTAGACTATGGGATTTGTAAAAGTAATTCTTGATGCCTC  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATATTACTAGACTATGGGATTTGTAAAAGTAATTCTTGATGCCTC  299

seq1  AAATAATAATCCCAATTAGCAAATCGAGGTATGTAGTCTAAATGTTTCTA  335
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATCCCAATTAGCAAATCGAGGTATGTAGTCTAAATGTTTCTA  349

seq1  ACAATACAAACACTGCTGGATATCCTAAAAGAAGACTCGATGTAGTCTCT  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATACAAACACTGCTGGATATCCTAAAAGAAGACTCGATGTAGTCTCT  399

seq1  GTAGATGTGCAGAAGCTGAATGTACAAAGTGACCTAGTCTTGGCTTTAGT  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTGCAGAAGCTGAATGTACAAAGTGACCTAGTCTTGGCTTTAGT  449

seq1  GTCATAATGGAGAAGACAGCATTCTGAGGTGTTGATGAATGTGATTACTG  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATAATGGAGAAGACAGCATTCTGAGGTGTTGATGAATGTGATTACTG  499

seq1  TTTAACAGAAGTTCTGTGTACCCCATTTTCTAAAGCGGAACACTTTACTC  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACAGAAGTTCTGTGTACCCCATTTTCTAAAGCGGAACACTTTACTC  549

seq1  TTGGAATAACCAATTCTCATTTTAAATGCTTTTGAAATTTTACATATGTA  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAATAACCAATTCTCATTTTAAATGCTTTTGAAATTTTACATATGTA  599

seq1  CATAGAATAAATATTGTTCTAATTCACCACAATTCTTTCCCCTCATTCTT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAATAAATATTGTTCTAATTCACCACAATTCTTTCCCCTCATTCTT  649

seq1  CTTTCTCTCCCCATGAAACCCTTTTATTTCCCAATACGTCCTTCTTTTAT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTCTCCCCATGAAACCCTTTTATTTCCCAATACGTCCTTCTTTTAT  699

seq1  TTTATACTGTGTGATCCACTGAGTTTAATTAGATTTTCTTGCCTACGAGT  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATACTGTGTGATCCACTGAGTTTAATTAGATTTTCTTGCCTACGAGT  749

seq1  GGGTGAAAGGTTATTTACTTCAGCACAAGCAACTTATTAGCAGCTACATA  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGAAAGGTTATTTACTTCAGCACAAGCAACTTATTAGCAGCTACATA  799

seq1  ACTGAAGAAAATGAGTCTGTTCCTTCCTACAGTTGTTAATTGCTAACAGA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGAAAATGAGTCTGTTCCTTCCTACAGTTGTTAATTGCTAACAGA  849

seq1  CCTTTGGGAAAAAATAACTGTGTGGCTCACTTCATAATATAAAGTTTAAA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGAAAAAATAACTGTGTGGCTCACTTCATAATATAAAGTTTAAA  899

seq1  ACCTGAAACCAGGGGATATTATGGCTTGCCTCGCTTTTATGTTAAAGTTA  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGAAACCAGGGGATATTATGGCTTGCCTCGCTTTTATGTTAAAGTTA  949

seq1  AGTAATCAAATCCCCTTCACATTTTCTATTGTTCAAGAGAATTTTTTTTT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATCAAATCCCCTTCACATTTTCTATTGTTCAAGAGAATTTTTTTTT  999

seq1  TTTGATTTTAAACCAACTTCAAAAGTTATCCAAACAAAATAGAGAGACCA  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATTTTAAACCAACTTCAAAAGTTATCCAAACAAAATAGAGAGACCA  1049

seq1  AGGGAGACGAAGTCTCACATAACCCGATGTCAAAACGAAAACTACTTTCT  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGACGAAGTCTCACATAACCCGATGTCAAAACGAAAACTACTTTCT  1099

seq1  CTGTTGTACTTGAAAAGATCTTGAAGATGAATTC  1119
      ||||||||||||||||||||||||||||||||||
seq2  CTGTTGTACTTGAAAAGATCTTGAAGATGAATTC  1133

seq1: chr16_66625536_66626601
seq2: B6Ng01-097N23.g_68_1135

seq1  GAATTCTGAGGTGTTTTTTGGCTTTTGGTTTTTTTGTTTGTTTGTTTGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGGTGTTTTTTGGCTTTTGGTTTTTTTGTTTGTTTGTTTGTT  50

seq1  TGTTTGCTTTGTTTTTTTGTTTTATTCTATACTTATCATTTATATTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGCTTTGTTTTTTTGTTTTATTCTATACTTATCATTTATATTCCAT  100

seq1  TTTCTAGTGCTCAAATATTTACCCTTATCAGTAGTTTAGAATCTTTTAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGTGCTCAAATATTTACCCTTATCAGTAGTTTAGAATCTTTTAAG  150

seq1  ATACATTGAATAATGTGATTTCCTATGTATATTTTCCCACCATTTTCATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTGAATAATGTGATTTCCTATGTATATTTTCCCACCATTTTCATA  200

seq1  TGGTCTTAATATTTTCTGACTTGTGGGTTAAATTTGCTTAGGAATTCATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTTAATATTTTCTGACTTGTGGGTTAAATTTGCTTAGGAATTCATC  250

seq1  TTTTCTGGTAGAAGACATGCATGCTTTTAGAGACCCAGTAACAGAATATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTGGTAGAAGACATGCATGCTTTTAGAGACCCAGTAACAGAATATG  300

seq1  CCTTAAACCAGAAAGTTAAATAACTATAATTAAATTTTTGTAGACATATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAACCAGAAAGTTAAATAACTATAATTAAATTTTTGTAGACATATG  350

seq1  CCATCAAATGTTAATTCTAAATTAGTTGGAAATATTAAGATTAAGATGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCAAATGTTAATTCTAAATTAGTTGGAAATATTAAGATTAAGATGGG  400

seq1  TTGAGTGACCTAGCCAACCACACACCACTGCTTAGCAATACTGTATACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGTGACCTAGCCAACCACACACCACTGCTTAGCAATACTGTATACTG  450

seq1  TAGAGTGCTGGTTAGATGCTCTCAGGATCCCATGGATGGCTGGGAACTAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTGCTGGTTAGATGCTCTCAGGATCCCATGGATGGCTGGGAACTAT  500

seq1  GGCTCACTGCTCACAATTAGAATTACACCAGAGCACTATTTCCTATGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCACTGCTCACAATTAGAATTACACCAGAGCACTATTTCCTATGACC  550

seq1  AGTCCGGGAAAATATAAAAATTCAGAAAACGACTTGTAGTTTTACTGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGGGAAAATATAAAAATTCAGAAAACGACTTGTAGTTTTACTGTAT  600

seq1  GTGTGTGGCTTTTAAAATACTGGAAAGTCAAAATGCTAGAAAGATATTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGCTTTTAAAATACTGGAAAGTCAAAATGCTAGAAAGATATTGG  650

seq1  AAATTGAGCAGGCTTGTGCTCTAAAACTTTAATTCATTCATGTTTTATTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGAGCAGGCTTGTGCTCTAAAACTTTAATTCATTCATGTTTTATTT  700

seq1  AATCCGCAAGCATTGCCTGGCTTCTACCATATGCTGGCCTGTAAAATAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCGCAAGCATTGCCTGGCTTCTACCATATGCTGGCCTGTAAAATAGA  750

seq1  TACTAGGAA-TTAAAATGTCTTTTCTGTTTATCACAAAGTTCTTTTC-TT  798
      ||||||||| ||||||||||||||||||||||||||||||||||||| ||
seq2  TACTAGGAATTTAAAATGTCTTTTCTGTTTATCACAAAGTTCTTTTCTTT  800

seq1  TCCTCTGTTATAGGCAGAGATTCAGTACATTTATTGTGCTAACAGTTCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTGTTATAGGCAGAGATTCAGTACATTTATTGTGCTAACAGTTCCT  850

seq1  ATTTGTCCATAAAAGAGAGCAAGATAAACACAGTGCAGACATCTCCTGAG  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTCCATAAAAGAGAGCAAGATAAACACAGTGCAGACATCTCCTGAG  900

seq1  GTGATTAAATAGCACTCAAGCAAACCGTGTATCTGAGCTCCGTTTGCTCT  948
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  GTGATTAAATAGCACTCAAGC-AACCGTGTATCTGAGCTCCGTTTGCTCT  949

seq1  CTC-AGGTAT-ACAGATCCAAACAG-CCTGG-ATGACCTGTGATGTCAGT  994
      ||| |||||| |||||| ||||||| ||||| ||||||||||||||||||
seq2  CTCAAGGTATAACAGAT-CAAACAGCCCTGGAATGACCTGTGATGTCAGT  998

seq1  TTACTATTGCCTCCAGTCCTG-ATTTCTGCTTTGTTAAACAGCATGATGA  1043
      ||||||||| || |||||||| |||||||||||| |||||||||||||||
seq2  TTACTATTG-CTTCAGTCCTGAATTTCTGCTTTG-TAAACAGCATGATGA  1046

seq1  GCCAGCTATTCAATTTCTTCCCC  1066
      ||||||||||| ||||| |||||
seq2  GCCAGCTATTC-ATTTCCTCCCC  1068