BAC Information

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BAC

Clone NameB6Ng01-098K19
Chromosome16 (Build37)
Map Location 62,099,866 - 62,173,376
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043524, LOC668183
Downstream geneLOC100043806, Nsun3, Arl13b, Stx19, Pros1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098K19.bB6Ng01-098K19.g
ACCDH908700DH908701
length1,1431,083
definitionDH908700|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K19, 5' end.DH908701|Mus musculus domesticus DNA, BAC clone: B6Ng01-098K19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,099,866 - 62,101,032)(62,172,290 - 62,173,376)
sequence
gaattcagtggtccacaatccagaagccagaccttactagaaacaaggct
catggcaatcctatctttgaacttcaggcatcagatgaaaaatgttccat
ggtttgtaaatagactgtaatagtaatctatattaatggctcaaggaagc
taatgaaaggtcaccttttctctctttttagagctaaacctcaccgtata
tgtaaacactgattatagtataattctgtgtaaatgataactggaattta
tgggtataagctgtttgccagaaatgaaatacaatctcaacagctcttct
gccttgcatgttgcaaaagcagaatttgcaagatataaaattggaccaaa
tttacttctaccagttactaaaattcattctgtgaaacaggataattttt
ctatctagataagacaggaggaggatttcacatcatttttagccagtctt
aaataataatgtgatctttgattacttcaagtcaagctagcttattttag
taatccactagcataatcatatgtaactctcgaaaattcatgcatattta
actttctccttttattaattcttacagaacatgaatatcctacctctttc
cattgccatgactacaaagttgctttttccttccttttcattttgtgtta
ggtaaaagttgaaatgattttttttttttgagacagggtttctttgtgta
gccctggctgtcctggaactcactttctagaccaggctggcctcgaactc
agaaatctacctgcctctacctcccaagtgctgggattaaaggcatgcgc
cacactgcccagcccttgccaagtattttaaacatactgttcccaaagta
atacatttcttctagctacaaatcatgactcagtgaaataggtttggcct
aatgctgcttgtatttgttaacttggtccccaaaactgcttacacaagtg
tctgcaaatagctagtgaggaccctgccccctgttggctctattgtaata
aagatcccagcagccaatgttgagcagacagacagacacatgacttttag
attagttgggagtgaaagggaagaagagcgattccacgaaggggtagatg
ctctattgccacttcctgatgagtctgtggtaccaagatgaaa
gaattcctttctttgaattctgaatagaatttgtttggccaagcaggtgt
atgaatcacagaggatatatgtttttttcaatcagaaatgatccttgcca
cccccagtgcttctatctctctctagctgtgtgtttgagtgtgaatagct
atagaaattggcttcatgggaccgcaagtttttgagacaaagaaaactac
ctgcctcttcttttggagtcttgccaagacccccaaagaaactgtttaag
caggcaaattgtagttcactgggcatggtgtttagggaataaccatagca
aggagagtcttattaacaatgtgactagtagtgtagatgcagtattgtgg
ccagaggaaaatagaaagtaagtttcaaagatggccatttgaaatacatt
ctaggctcttcacatgctaaatgaatctaattgtatcagagccatggtca
ttactgcttttaaaattattttaattttatatgaagagaaacacaagatt
tgatgaggaacttcagtttgagtggtaaaataaacttataatacagaaaa
atatgaaaaaataaacatatctgtcatattatggtcctactctgacagga
taggaaatgaagggctgaaaatcctctgaaactctcagtggagctgcata
acgtctgttgacacaaactggccttctgattatgcctgactgtaattttg
gtcaagttggagatattctgtcaatctccattttctaaggcaaaagatca
cttgaggtggaaatatctgtttggtgaactagtgtaaaagattttgagat
tgaataattatgaattcacagtgatcacttgttgagatagacagtgatgt
ggaaagactcattgtcagtttggttcatagtcttcagttctatatctgtg
tgcgtgtgcgtgtgcgtgtgtgtaagcatgtgctcatacacacacatgga
aacctacactgtcaattatttatttttgaaataaaacagtggtattttta
agttttgtttcatccactcaggtctatgtttttttatcagcagttccggg
gcttctgcttaccattaatgttagtgtcagcac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62099866_62101032
seq2: B6Ng01-098K19.b_51_1193

seq1  GAATTCAGTGGTCCACAATCCAGAAGCCAGACCTTACTAGAAACAAGGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTGGTCCACAATCCAGAAGCCAGACCTTACTAGAAACAAGGCT  50

seq1  CATGGCAATCCTATCTTTGAACTTCAGGCATCAGATGAAAAATGTTCCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGCAATCCTATCTTTGAACTTCAGGCATCAGATGAAAAATGTTCCAT  100

seq1  GGTTTGTAAATAGACTGTAATAGTAATCTATATTAATGGCTCAAGGAAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGTAAATAGACTGTAATAGTAATCTATATTAATGGCTCAAGGAAGC  150

seq1  TAATGAAAGGTCACCTTTTCTCTCTTTTTAGAGCTAAACCTCACCGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAAAGGTCACCTTTTCTCTCTTTTTAGAGCTAAACCTCACCGTATA  200

seq1  TGTAAACACTGATTATAGTATAATTCTGTGTAAATGATAACTGGAATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAACACTGATTATAGTATAATTCTGTGTAAATGATAACTGGAATTTA  250

seq1  TGGGTATAAGCTGTTTGCCAGAAATGAAATACAATCTCAACAGCTCTTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTATAAGCTGTTTGCCAGAAATGAAATACAATCTCAACAGCTCTTCT  300

seq1  GCCTTGCATGTTGCAAAAGCAGAATTTGCAAGATATAAAATTGGACCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTGCATGTTGCAAAAGCAGAATTTGCAAGATATAAAATTGGACCAAA  350

seq1  TTTACTTCTACCAGTTACTAAAATTCATTCTGTGAAACAGGATAATTTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTTCTACCAGTTACTAAAATTCATTCTGTGAAACAGGATAATTTTT  400

seq1  CTATCTAGATAAGACAGGAGGAGGATTTCACATCATTTTTAGCCAGTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTAGATAAGACAGGAGGAGGATTTCACATCATTTTTAGCCAGTCTT  450

seq1  AAATAATAATGTGATCTTTGATTACTTCAAGTCAAGCTAGCTTATTTTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATAATGTGATCTTTGATTACTTCAAGTCAAGCTAGCTTATTTTAG  500

seq1  TAATCCACTAGCATAATCATATGTAACTCTCGAAAATTCATGCATATTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCCACTAGCATAATCATATGTAACTCTCGAAAATTCATGCATATTTA  550

seq1  ACTTTCTCCTTTTATTAATTCTTACAGAACATGAATATCCTACCTCTTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTCCTTTTATTAATTCTTACAGAACATGAATATCCTACCTCTTTC  600

seq1  CATTGCCATGACTACAAAGTTGCTTTTTCCTTCCTTTTCATTTTGTGTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGCCATGACTACAAAGTTGCTTTTTCCTTCCTTTTCATTTTGTGTTA  650

seq1  GGTAAAAGTTGAAATGATTTTTTTTTTTTGAGACAGGGTTTCTTTGTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAAAAGTTGAAATGATTTTTTTTTTTTGAGACAGGGTTTCTTTGTGTA  700

seq1  GCCCTGGCTGTCCTGGAACTCACTTTCTAGACCAGGCTGGCCTCGAACTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGGCTGTCCTGGAACTCACTTTCTAGACCAGGCTGGCCTCGAACTC  750

seq1  AGAAATCTACCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGCATGCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCTACCTGCCTCTACCTCCCAAGTGCTGGGATTAAAGGCATGCGC  800

seq1  CACACTGCCCAGCCCTTGCCAAGTATTTTAAACATACTGTTCCCAAAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACTGCCCAGCCCTTGCCAAGTATTTTAAACATACTGTTCCCAAAGTA  850

seq1  ATACATTTCTTCTAGCTACAAATCATGACTCAGTGAAATAGGTTTGGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATTTCTTCTAGCTACAAATCATGACTCAGTGAAATAGGTTTGGCCT  900

seq1  AATGCTGCTTGTATTTGTTAACTTTGGTCCCCAAAACTGCTTACACAAGT  950
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  AATGCTGCTTGTATTTGTTAAC-TTGGTCCCCAAAACTGCTTACACAAGT  949

seq1  GTCTGCAAATAAGCTAGTGAAGGACCCTGCCCCCCTGTTGGCTCCTATTG  1000
      |||||||||| |||||||| ||||||||| ||||||||||||| ||||||
seq2  GTCTGCAAAT-AGCTAGTG-AGGACCCTG-CCCCCTGTTGGCT-CTATTG  995

seq1  GTAAATAAAGATCCCAGCAGCCAATGGTTGAGCAGGACAGACAGACACAG  1050
         |||||||||||||||||||||| |||||||| |||||||||||||| 
seq2  --TAATAAAGATCCCAGCAGCCAAT-GTTGAGCA-GACAGACAGACACAT  1041

seq1  GACTTTTAGGATTAGTTGGGAGTGAGAGGAGAAGAAGAAGGAGAATTTCC  1100
      |||||||| |||||||||||||||| ||| ||||||||  ||    ||||
seq2  GACTTTTA-GATTAGTTGGGAGTGAAAGG-GAAGAAGAGCGA----TTCC  1085

seq1  ACGAGAGGGGTGTAGGATGGCTCTATTGGCCACTTCCCTGATTGAGTCTG  1150
      |||| ||||||    ||| |||||||| ||||||| ||||| ||||||||
seq2  ACGA-AGGGGT---AGAT-GCTCTATT-GCCACTT-CCTGA-TGAGTCTG  1127

seq1  TGGTAGCAGAGATGAAA  1167
      ||||| || ||||||||
seq2  TGGTACCA-AGATGAAA  1143

seq1: chr16_62172290_62173376
seq2: B6Ng01-098K19.g_66_1148 (reverse)

seq1  GTGCTGTACACTAAACATT-ATGGT-AGCAGAAGCCCCCGGAAACTGCTG  48
      |||||| ||||| |||||| ||||| ||||||||||||  | ||||||||
seq2  GTGCTG-ACACT-AACATTAATGGTAAGCAGAAGCCCC--GGAACTGCTG  46

seq1  AT-AAAAAACATAGACATGAGTGGATTGAAACAAAACTTAAAAATA-CAC  96
      || ||||||||||||| |||||||| |||||||||||||||||||| |||
seq2  ATAAAAAAACATAGACCTGAGTGGA-TGAAACAAAACTTAAAAATACCAC  95

seq1  TGGTTTTATTTCAAAAATAAATAATTTGACAGTGTAGGTTTCCATGTGTG  146
      | |||||||||||||||||||||| |||||||||||||||||||||||||
seq2  T-GTTTTATTTCAAAAATAAATAA-TTGACAGTGTAGGTTTCCATGTGTG  143

seq1  TGTATGAGCACATGCTTACACACACGCACACGCACACGCACACAGATATA  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGAGCACATGCTTACACACACGCACACGCACACGCACACAGATATA  193

seq1  GAACTGAAGACTATGAACCAAACCTGACAATGAGTCTTTCCACATCACTG  246
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAACTGAAGACTATGAACCAAA-CTGACAATGAGTCTTTCCACATCACTG  242

seq1  TCTATCTCAACAAGTGATCACTGTGAATTCATAATTATTCAATCTCAAAA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATCTCAACAAGTGATCACTGTGAATTCATAATTATTCAATCTCAAAA  292

seq1  TCTTTTACACTAGTTCACCAAACAGATATTTCCACCTCAAGTGATCTTTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTACACTAGTTCACCAAACAGATATTTCCACCTCAAGTGATCTTTT  342

seq1  GCCTTAGAAAATGGAGATTGACAGAATATCTCCAACTTGACCAAAATTAC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGAAAATGGAGATTGACAGAATATCTCCAACTTGACCAAAATTAC  392

seq1  AGTCAGGCATAATCAGAAGGCCAGTTTGTGTCAACAGACGTTATGCAGCT  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCAGGCATAATCAGAAGGCCAGTTTGTGTCAACAGACGTTATGCAGCT  442

seq1  CCACTGAGAGTTTCAGAGGATTTTCAGCCCTTCATTTCCTATCCTGTCAG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAGAGTTTCAGAGGATTTTCAGCCCTTCATTTCCTATCCTGTCAG  492

seq1  AGTAGGACCATAATATGACAGATATGTTTATTTTTTCATATTTTTCTGTA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGACCATAATATGACAGATATGTTTATTTTTTCATATTTTTCTGTA  542

seq1  TTATAAGTTTATTTTACCACTCAAACTGAAGTTCCTCATCAAATCTTGTG  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAGTTTATTTTACCACTCAAACTGAAGTTCCTCATCAAATCTTGTG  592

seq1  TTTCTCTTCATATAAAATTAAAATAATTTTAAAAGCAGTAATGACCATGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTCATATAAAATTAAAATAATTTTAAAAGCAGTAATGACCATGG  642

seq1  CTCTGATACAATTAGATTCATTTAGCATGTGAAGAGCCTAGAATGTATTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATACAATTAGATTCATTTAGCATGTGAAGAGCCTAGAATGTATTT  692

seq1  CAAATGGCCATCTTTGAAACTTACTTTCTATTTTCCTCTGGCCACAATAC  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGGCCATCTTTGAAACTTACTTTCTATTTTCCTCTGGCCACAATAC  742

seq1  TGCATCTACACTACTAGTCACATTGTTAATAAGACTCTCCTTGCTATGGT  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCTACACTACTAGTCACATTGTTAATAAGACTCTCCTTGCTATGGT  792

seq1  TATTCCCTAAACACCATGCCCAGTGAACTACAATTTGCCTGCTTAAACAG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCCCTAAACACCATGCCCAGTGAACTACAATTTGCCTGCTTAAACAG  842

seq1  TTTCTTTGGGGGTCTTGGCAAGACTCCAAAAGAAGAGGCAGGTAGTTTTC  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGGGGGTCTTGGCAAGACTCCAAAAGAAGAGGCAGGTAGTTTTC  892

seq1  TTTGTCTCAAAAACTTGCGGTCCCATGAAGCCAATTTCTATAGCTATTCA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTCTCAAAAACTTGCGGTCCCATGAAGCCAATTTCTATAGCTATTCA  942

seq1  CACTCAAACACACAGCTAGAGAGAGATAGAAGCACTGGGGGTGGCAAGGA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCAAACACACAGCTAGAGAGAGATAGAAGCACTGGGGGTGGCAAGGA  992

seq1  TCATTTCTGATTGAAAAAAACATATATCCTCTGTGATTCATACACCTGCT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTCTGATTGAAAAAAACATATATCCTCTGTGATTCATACACCTGCT  1042

seq1  TGGCCAAACAAATTCTATTCAGAATTCAAAGAAAGGAATTC  1087
      |||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAAACAAATTCTATTCAGAATTCAAAGAAAGGAATTC  1083