BAC Information

Click to search

BAC

Clone NameB6Ng01-099C20
Chromosome16 (Build37)
Map Location 40,760,616 - 40,853,100
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC667400
Downstream geneEG667450, Lsamp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099C20.bB6Ng01-099C20.g
ACCDH909043DH909044
length1,1741,169
definitionDH909043|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C20, 5' end.DH909044|Mus musculus domesticus DNA, BAC clone: B6Ng01-099C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,760,616 - 40,761,799)(40,851,925 - 40,853,100)
sequence
gaattcagggatcaaaaagcgtggaaaaatttgaatgtcatgtcgagctg
gtatcagcttctggaataccgaaaggatctctcatctcggctccatcctt
tgtgcttgtgggatcatccaccacatccacaggggtaactgtatcaggaa
ccttattcttgcagcgtctccccaatctctccggcacccaaagaggttcc
atctggtccctgccggcaaccactgactgctgaatgttctgaactcagtg
ggggagtcggttccctgcacgggccaccaattgtcgcgtccgctctcgac
cagcaagaacgacacgaccaccagtccttctaacagcagtttattcagtc
ctgattcttcttgtttatatctcccccgaaccctgggcctctcactcagt
cctttgggactgccaccacacccgctcctaacaattgggggccctgtgtt
ccatccaataaatgtctataagcatccacttctgtatttgccaggcactg
gcatagcctcacaagagctagttatatcagggtcctgtcagcaaaatttt
gctggcataagtctgtctgttttctgattgaagtttagttaatttcaaga
aattgcacaatttctgatgccaagggtccattgatagagtatcgaataca
gagtaatatacatttttaaaactgcaaagtagtaaaatccaacagtcaag
ccagaatctatgatgaacagagaattaaattctggtaaatgagtaacgaa
gagtgacaatatcacgaagcagaagagtgaaaaatcttcaggatcaatgt
caaactcagttggtcagcatcctagatctttatggactcgattatacaag
gtaccattttgtcaataagatttttcctatatatgataaaaaatgaggca
aaaaaatatgtgtttgaagttcataaataattgtaagtacttctttaaaa
tatagtggtgttgttggaattttaaaccttaataagcttgtatgaaagac
acacaatccagatgtatattacagaccttgtgtctagatgggcagctcta
gtactatactaacttatgcctccagtataagacaccttggtactgggaat
tcttctgggcattggtctgtccactgggcttcttcctcctcttctcattc
ttacctctccacttactgccaacc
gaattcaagcaggtcagggtcctagagggagaagctgatgcagaggccag
ggaagagtgctgcttactggcttgctcagcctgttttctttttcatttct
ttttctttttttgggggggggggattcgagacagggtttctctgtgtagc
cctggctgtctggctgtcctggaactcactttgtagaccagattggcctc
gaactcagaaatccgcctgcttctgcctcccaagtgctgggattaaaggt
atgtgccaccagcctgttttcttatcaaatccaggaccactagcccagga
gtggtcccacacaatatttactggctctttcatatgatttcctaagaaaa
tgccctctggcttgcctgctgcctgattttatgaaggcattttctcaatt
tagactttctcctctcatgattctagtttgtgtcaagttgacacacaact
atccaccaaagtaacccgcccaacacgtgcccgaaatgcattgacgaaat
ggaacttaattgggaaatagtaaaataaacacaagaaaaacaattaaaca
acaacagctcagcagatatcttaattagataatttcaggtttgaaataat
accatcacttggcaattagagaccattggatgacaattcaatgcctgaag
cttggaattaaatttcgtgttttggtctgtggtatttgaatgtctgtgca
ctttgcagaatgtaaaagatttatatagttccatctgatttcattcctac
aacctattagaaaataaagcgtcttcatttccagtggcattgtagctagt
tgcaggtgattttgttatagtcaaaagttttcttttcaatgaaattttaa
aatccttttttttttttctgagcacaatgactgacatagaaagtgttaga
aaagttatcagaggttgtccttaagagacattcaggaatcactaatgaca
atggtttcatatagccagcagcatacacaagtgatatatcaatttttgaa
tatccttcttaatatgctgttttctttctggagaatcccaagggttgagt
cactagagggccctttggatgaatgaatgaggttgaaatcccgattctac
cttcctttcccatcctcaagcaacctaatataatatggcaccaaggattg
attcaggcttcatcttaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_40760616_40761799
seq2: B6Ng01-099C20.b_45_1218

seq1  GAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGATCAAAAAGCGTGGAAAAATTTGAATGTCATGTCGAGCTG  50

seq1  GTATCAGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATCAGCTTCTGGAATACCGAAAGGATCTCTCATCTCGGCTCCATCCTT  100

seq1  TGTGCTTGTGGGATCATCCACCACATCCACAGGGGTAACTGTATCAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTTGTGGGATCATCCACCACATCCACAGGGGTAACTGTATCAGGAA  150

seq1  CCTTATTCTTGCAGCGTCTCCCCAATCTCTCCGGCACCCAAAGAGGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATTCTTGCAGCGTCTCCCCAATCTCTCCGGCACCCAAAGAGGTTCC  200

seq1  ATCTGGTCCCTGCCGGCAACCACTGACTGCTGAATGTTCTGAACTCAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGTCCCTGCCGGCAACCACTGACTGCTGAATGTTCTGAACTCAGTG  250

seq1  GGGGAGTCGGTTCCCTGCACGGGCCACCAATTGTCGCGTCCGCTCTCGAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGTCGGTTCCCTGCACGGGCCACCAATTGTCGCGTCCGCTCTCGAC  300

seq1  CAGCAAGAACGACACGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGAACGACACGACCACCAGTCCTTCTAACAGCAGTTTATTCAGTC  350

seq1  CTGATTCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTCTTCTTGTTTATATCTCCCCCGAACCCTGGGCCTCTCACTCAGT  400

seq1  CCTTTGGGACTGCCACCACACCCGCTCCTAACAATTGGGGGCCCTGTGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGGGACTGCCACCACACCCGCTCCTAACAATTGGGGGCCCTGTGTT  450

seq1  CCATCCAATAAATGTCTATAAGCATCCACTTCTGTATTTGCCAGGCACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCAATAAATGTCTATAAGCATCCACTTCTGTATTTGCCAGGCACTG  500

seq1  GCATAGCCTCACAAGAGCTAGTTATATCAGGGTCCTGTCAGCAAAATTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGCCTCACAAGAGCTAGTTATATCAGGGTCCTGTCAGCAAAATTTT  550

seq1  GCTGGCATAAGTCTGTCTGTTTTCTGATTGAAGTTTAGTTAATTTCAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATAAGTCTGTCTGTTTTCTGATTGAAGTTTAGTTAATTTCAAGA  600

seq1  AATTGCACAATTTCTGATGCCAAGGGTCCATTGATAGAGTATCGAATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGCACAATTTCTGATGCCAAGGGTCCATTGATAGAGTATCGAATACA  650

seq1  GAGTAATATACATTTTTAAAACTGCAAAGTAGTAAAATCCAACAGTCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTAATATACATTTTTAAAACTGCAAAGTAGTAAAATCCAACAGTCAAG  700

seq1  CCAGAATCTATGATGAACAGAGAATTAAATTCTGGTAAATGAGTAACGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCTATGATGAACAGAGAATTAAATTCTGGTAAATGAGTAACGAA  750

seq1  GAGTGACAATATCACGAAGCAGAAGAGTGAAAAATCTTCAGGATCAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGACAATATCACGAAGCAGAAGAGTGAAAAATCTTCAGGATCAATGT  800

seq1  CAAACTCAGGTTGGTCAGCATCCTAGATCTTTATGGACTCGATTATACAA  850
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCA-GTTGGTCAGCATCCTAGATCTTTATGGACTCGATTATACAA  849

seq1  GGTACCATTTTGTCAATAAGATTTTTCCTATATATGATAAAAAATGAGGC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCATTTTGTCAATAAGATTTTTCCTATATATGATAAAAAATGAGGC  899

seq1  -AAAAAATATGTGTTTGAAGTTCAT-AATAATTGTAAGTAC-TCTTTAAA  947
       |||||||||||||||||||||||| ||||||||||||||| ||||||||
seq2  AAAAAAATATGTGTTTGAAGTTCATAAATAATTGTAAGTACTTCTTTAAA  949

seq1  ATATAGTGGTGTTGTTGGAATTTTAAACCTTAATAAGCCTGTATGAAAGA  997
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATATAGTGGTGTTGTTGGAATTTTAAACCTTAATAAGCTTGTATGAAAGA  999

seq1  CACACAATCCAGATGTATTAATTACAGACCTTGTGCCTAGATTGGGCAGC  1047
      ||||||||||||||||||  ||||||||||||||| ||||| ||||||||
seq2  CACACAATCCAGATGTAT--ATTACAGACCTTGTGTCTAGA-TGGGCAGC  1046

seq1  TCTAGTACTATACTAACTTATG-CTCCAGTTATAAGACACCTTGTTACTT  1096
      |||||||||||||||||||||| |||||| |||||||||||||| |||| 
seq2  TCTAGTACTATACTAACTTATGCCTCCAG-TATAAGACACCTTGGTACTG  1095

seq1  GGAATTTCTCTTGGCCATGTGGTTCTGGTCCACTGTGGCTTCTTCCTCCT  1146
      |||| ||||  ||| ||| ||| ||| |||||||| ||||||||||||||
seq2  GGAA-TTCTTCTGGGCAT-TGG-TCT-GTCCACTG-GGCTTCTTCCTCCT  1140

seq1  CTTCTTCATTCCTTTACTTCTCCCACTACCTGCCAACC  1184
      |||| ||||||  |||| ||| |||||  |||||||||
seq2  CTTC-TCATTC--TTACCTCT-CCACTTACTGCCAACC  1174

seq1: chr16_40851925_40853100
seq2: B6Ng01-099C20.g_66_1234 (reverse)

seq1  TTTAAGAAGGGAAGCCCTGAATCAAATCTTAGTGGCCAAATTAAAAATAG  50
      |||||||   |||| ||||||||||  ||| || |||| ||| | | |||
seq2  TTTAAGA--TGAAG-CCTGAATCAATCCTTGGT-GCCATATT-ATATTAG  45

seq1  TTTGCATGAAGAATGAGAAA-GAAGGTAGAAATCGGATTTCAAACACTAT  99
       |||| || || ||| |||| ||||||||||   ||||||||| | | ||
seq2  GTTGCTTG-AGGATGGGAAAGGAAGGTAGAATCGGGATTTCAACCTC-AT  93

seq1  ACATTCATACAAAGGGGCATCTAGTGACTCAGACCTTGGGATTCT-CAGA  148
       ||||||| ||||||| | ||||||||||||  |||||||||||| ||||
seq2  TCATTCATCCAAAGGGCCCTCTAGTGACTCAACCCTTGGGATTCTCCAGA  143

seq1  AAGAAAACAGCAATATTAAGAGGGATA-TCAAAAATTGATATATCACCTG  197
      ||||||||||| ||||||||| ||||| ||||||||||||||||||| ||
seq2  AAGAAAACAGC-ATATTAAGAAGGATATTCAAAAATTGATATATCACTTG  192

seq1  TGTATGCCTGCTGGCTATTATGAAACCATTGTCATTAGTGATTCCTGAAT  247
      |||||| |||||||||| ||||||||||||||||||||||||||||||||
seq2  TGTATG-CTGCTGGCTA-TATGAAACCATTGTCATTAGTGATTCCTGAAT  240

seq1  GTCTCTTAAGGACAACCTCTGATAACTTTTCTAACACTTTCTATGTCAGT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTAAGGACAACCTCTGATAACTTTTCTAACACTTTCTATGTCAGT  290

seq1  CATTGTGCTCAGAAAAAAAAAAAAGGATTTTAAAATTTCATTGAAAAGAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTGCTCAGAAAAAAAAAAAAGGATTTTAAAATTTCATTGAAAAGAA  340

seq1  AACTTTTGACTATAACAAAATCACCTGCAACTAGCTACAATGCCACTGGA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGACTATAACAAAATCACCTGCAACTAGCTACAATGCCACTGGA  390

seq1  AATGAAGACGCTTTATTTTCTAATAGGTTGTAGGAATGAAATCAGATGGA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGACGCTTTATTTTCTAATAGGTTGTAGGAATGAAATCAGATGGA  440

seq1  ACTATATAAATCTTTTACATTCTGCAAAGTGCACAGACATTCAAATACCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATATAAATCTTTTACATTCTGCAAAGTGCACAGACATTCAAATACCA  490

seq1  CAGACCAAAACACGAAATTTAATTCCAAGCTTCAGGCATTGAATTGTCAT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGACCAAAACACGAAATTTAATTCCAAGCTTCAGGCATTGAATTGTCAT  540

seq1  CCAATGGTCTCTAATTGCCAAGTGATGGTATTATTTCAAACCTGAAATTA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGGTCTCTAATTGCCAAGTGATGGTATTATTTCAAACCTGAAATTA  590

seq1  TCTAATTAAGATATCTGCTGAGCTGTTGTTGTTTAATTGTTTTTCTTGTG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAATTAAGATATCTGCTGAGCTGTTGTTGTTTAATTGTTTTTCTTGTG  640

seq1  TTTATTTTACTATTTCCCAATTAAGTTCCATTTCGTCAATGCATTTCGGG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTTACTATTTCCCAATTAAGTTCCATTTCGTCAATGCATTTCGGG  690

seq1  CACGTGTTGGGCGGGTTACTTTGGTGGATAGTTGTGTGTCAACTTGACAC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGTGTTGGGCGGGTTACTTTGGTGGATAGTTGTGTGTCAACTTGACAC  740

seq1  AAACTAGAATCATGAGAGGAGAAAGTCTAAATTGAGAAAATGCCTTCATA  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAATCATGAGAGGAGAAAGTCTAAATTGAGAAAATGCCTTCATA  790

seq1  AAATCAGGCAGCAGGCAAGCCAGAGGGCATTTTCTTAGGAAATCATATGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAGGCAGCAGGCAAGCCAGAGGGCATTTTCTTAGGAAATCATATGA  840

seq1  AAGAGCCAGTAAATATTGTGTGGGACCACTCCTGGGCTAGTGGTCCTGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGCCAGTAAATATTGTGTGGGACCACTCCTGGGCTAGTGGTCCTGGA  890

seq1  TTTGATAAGAAAACAGGCTGGTGGCACATACCTTTAATCCCAGCACTTGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAGAAAACAGGCTGGTGGCACATACCTTTAATCCCAGCACTTGG  940

seq1  GAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAATCTGGTCTACAAA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGAAGCAGGCGGATTTCTGAGTTCGAGGCCAATCTGGTCTACAAA  990

seq1  GTGAGTTCCAGGACAGCCAGACAGCCAGGGCTACACAGAGAAACCCTGTC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCCAGGACAGCCAGACAGCCAGGGCTACACAGAGAAACCCTGTC  1040

seq1  TCGAATCCCCCCCCCCCAAAAAAAGAAAAAGAAATGAAAAAGAAAACAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATCCCCCCCCCCCAAAAAAAGAAAAAGAAATGAAAAAGAAAACAGG  1090

seq1  CTGAGCAAGCCAGTAAGCAGCACTCTTCCCTGGCCTCTGCATCAGCTTCT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGCAAGCCAGTAAGCAGCACTCTTCCCTGGCCTCTGCATCAGCTTCT  1140

seq1  CCCTCTAGGACCCTGACCTGCTTGAATTC  1176
      |||||||||||||||||||||||||||||
seq2  CCCTCTAGGACCCTGACCTGCTTGAATTC  1169