BAC Information

Click to search

BAC

Clone NameB6Ng01-100L18
Chromosome16 (Build37)
Map Location 4,032,541 - 4,119,852
singlet/doubletdoublet
Overlap geneDnase1, Trap1, Crebbp
Upstream geneLOC100042177, LOC100042915, LOC100042188, LOC100042251, LOC100042925, LOC100042270, LOC100042937, LOC100042283, Olfr161, Olfr162-ps1, Olfr163-ps1, LOC100042949, Mefv, EG620395, Zfp263, Olfr15, Zfp174, Zfp597, 1200013P24Rik, 1700037C18Rik, Cluap1, LOC664851, Nlrc3, Btbd12
Downstream geneEG436332, Adcy9, EG620313, Srl, Tcfap4, Glis2, Magmas, Coro7, Vasn, Dnaja3, Nmral1, Hmox2, 5730403B10Rik, 4930562C15Rik, 1500031H01Rik, Mgrn1, Nudt16l1, Anks3, 4930451G09Rik, Sept12, EG432995, Rogdi, 3930401K13Rik, Ubn1, Ppl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100L18.bB6Ng01-100L18.g
ACCDH910141DH910142
length1,1121,032
definitionDH910141|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L18, 5' end.DH910142|Mus musculus domesticus DNA, BAC clone: B6Ng01-100L18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(4,032,541 - 4,033,654)(4,118,812 - 4,119,852)
sequence
gaattctctaatgcagaagcactggctgtcgtctgtggtatcagtggccc
tgaacctaggccctccctcaccagggactgggttcaaagtctgttatctg
tgggaagcctttccctctagataatggtgttcagctgggcaggttttatg
cggatggtagggtctcaactttgttgttttggagaaaagtttgttcccta
tcattccagaggttgctgatattcccttccccttatcacagtgtgtgtat
gtgtgtgtgtgtgtgtaagtgtgcacaattttgagaatcagtttttttaa
aaagatttatttatttatttatttatttattatatgtaaatacactgtag
ctgtcttcagacaccccagaagagggcatcagatctcattatggatggtt
gtgagccaccatgtggttgctgggatttgaactcgagaccttcggaagag
ccagtcagtgctcttaaccgctgagccatctctccagcccgagaatcagt
tcttttccaaacctttgtggggattgcaggaattgaactttgtcaggttg
gtgtgtcaagtccatcctgtctcctgttgctaatttcatatcaatacaaa
ctcgagtatttaatacaggtaaaatggctaatgcatggcaagggttctta
gaatggtttatggaacggagtgtctccgtgagctgttcaagctttttgaa
aatacatacagacacacagacacagccacagcccaaatgaaaggagtgct
aaggctagcagactgcatgaccactctccaagccacaccttgctcgccag
ctcacagcttccaggctttctcagtgacacaacttagcgaaggtgggtag
taagtcaccacaggaaatcacccacagatggatgtctattagctgggcga
acccaatcaggatttatggccttacaatttatagtagacatttgaaaagt
tagcacacatacattactatattgctccatttggttgcttttttgaaaca
tggtttccctgtggatatcctggacacttgaaactcactcctgtaggtca
tcttggatctaaacctatagaagatccctttcttgcctcccaagcgccgg
gattaaaaggag
gaattcatttaacccaatgtccctgggaaacgtccagttgccacaggcac
ccatgggacctcgtgcagcctcccctatgaaccactctgtgcagatgaac
agcatggcctcagttccgggtgtaagtgctcctcctctcagtccttgctc
agtagagtgttctctaaggagggataccccattgttacctgagaatttta
ggggacttattcatttaaatttgagcattgttttatttccttgttttctt
aaactagccaacaaacaggattgttggtataatgaggactatttgaatgc
tgattttttttttaaaataataattctgtaagtatttgctgtcagtgaat
tggaacaggcagccaatggcttatattgttggtgtctgttcacatcagca
actaattaaaggcatgattgaattcaaaatgacagcatgttattgattgc
cattctgaagacagttcagcattgacttgagaaattgtagaaagtgccta
ggaactggggagtccctgggaagtagtggtctttaaaaccaaagtgtact
agatttgtaaggctttggatctccactgtactgtgatctcttgaagactc
tgacctaacacttctgattcttgtcttatagatggccatttctccttcac
ggatgcctcagcctccaaatatgatgggcactcatgccaacaacattatg
gcccaggcacctactcagaaccagtttctgccacagaaccagtttccatc
atccagtggggcaatgagtgtgaacagtgtgggcatggggcaaccagcag
cccaggcaggtgttttacaggtacattcactgagggagcctggtcaacca
gtatttatatagccccagctttgtgacatgatcctgtctaagttgatgga
aactagaatctaagaatatacatctttccatttcccgtttgccctataat
tttatttgtgtttattttctgttccctctagtaaacttccaacataaagt
aaatggattgtggttgtgggggttgtttgttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_4032541_4033654
seq2: B6Ng01-100L18.b_48_1159

seq1  GAATTCTCTAATGCAGAAGCACTGGCTGTCGTCTGTGGTATCAGTGGCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAATGCAGAAGCACTGGCTGTCGTCTGTGGTATCAGTGGCCC  50

seq1  TGAACCTAGGCCCTCCCTCACCAGGGACTGGGTTCAAAGTCTGTTATCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTAGGCCCTCCCTCACCAGGGACTGGGTTCAAAGTCTGTTATCTG  100

seq1  TGGGAAGCCTTTCCCTCTAGATAATGGTGTTCAGCTGGGCAGGTTTTATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAAGCCTTTCCCTCTAGATAATGGTGTTCAGCTGGGCAGGTTTTATG  150

seq1  CGGATGGTAGGGTCTCAACTTTGTTGTTTTGGAGAAAAGTTTGTTCCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGATGGTAGGGTCTCAACTTTGTTGTTTTGGAGAAAAGTTTGTTCCCTA  200

seq1  TCATTCCAGAGGTTGCTGATATTCCCTTCCCCTTATCACAGTGTGTGTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCCAGAGGTTGCTGATATTCCCTTCCCCTTATCACAGTGTGTGTAT  250

seq1  GTGTGTGTGTGTGTGTAAGTGTGCACAATTTTGAGAATCAGTTTTTTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTAAGTGTGCACAATTTTGAGAATCAGTTTTTTTAA  300

seq1  AAAGATTTATTTATTTATTTATTTATTTATTATATGTAAATACACTGTAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGATTTATTTATTTATTTATTTATTTATTATATGTAAATACACTGTAG  350

seq1  CTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTCAGACACCCCAGAAGAGGGCATCAGATCTCATTATGGATGGTT  400

seq1  GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGAGACCTTCGGAAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCACCATGTGGTTGCTGGGATTTGAACTCGAGACCTTCGGAAGAG  450

seq1  CCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCGAGAATCAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCGAGAATCAGT  500

seq1  TCTTTTCCAAACCTTTGTGGGGATTGCAGGAATTGAACTTTGTCAGGTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCCAAACCTTTGTGGGGATTGCAGGAATTGAACTTTGTCAGGTTG  550

seq1  GTGTGTCAAGTCCATCCTGTCTCCTGTTGCTAATTTCATATCAATACAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCAAGTCCATCCTGTCTCCTGTTGCTAATTTCATATCAATACAAA  600

seq1  CTCGAGTATTTAATACAGGTAAAATGGCTAATGCATGGCAAGGGTTCTTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGAGTATTTAATACAGGTAAAATGGCTAATGCATGGCAAGGGTTCTTA  650

seq1  GAATGGTTTATGGAACGGAGTGTCTCCGTGAGCTGTTCAAGC-TTTTGAA  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATGGTTTATGGAACGGAGTGTCTCCGTGAGCTGTTCAAGCTTTTTGAA  700

seq1  AATACATACAGACACACAGACACAGCCACAGCCCAAATG-AAGGAGTGCT  748
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  AATACATACAGACACACAGACACAGCCACAGCCCAAATGAAAGGAGTGCT  750

seq1  AAGGCTAGCAGACTGCATGACCACTCTCCAAGCCACACCTTGCTCGCCAG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCTAGCAGACTGCATGACCACTCTCCAAGCCACACCTTGCTCGCCAG  800

seq1  CTCACAGCTTCCAGGCTTTCTCAGTGACACAACTTAGCGAAGGTTGGTAG  848
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCACAGCTTCCAGGCTTTCTCAGTGACACAACTTAGCGAAGGTGGGTAG  850

seq1  TAAGTCACCCACAGGAAATCACCCACAGATGGATGTCTATTAGCTGGGCG  898
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCA-CCACAGGAAATCACCCACAGATGGATGTCTATTAGCTGGGCG  899

seq1  AACCCAATCAGGATTTATGGCCTTACAATTTATAGTAGACATTTGAAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  AACCCAATCAGGATTTATGGCCTTACAATTTATAGTAGACATTTG-AAAA  948

seq1  GTTAGCACACATACATTACTATTATTGCTTCATTTTGTTTGCTTTTTTTG  998
      ||||||||||||||||||||| ||||||| || |||| |||| |||||||
seq2  GTTAGCACACATACATTACTA-TATTGCTCCA-TTTGGTTGC-TTTTTTG  995

seq1  AGACATGGTTTCCCTGTGTA-GCCCTGGACACCTGAAACTCACT-CTGTA  1046
      | |||||||||||||||| |   ||||||||| ||||||||||| |||||
seq2  AAACATGGTTTCCCTGTGGATATCCTGGACACTTGAAACTCACTCCTGTA  1045

seq1  GGTCAGTCTGGTCTC-AAACTTATAG-AGATCCACTTTCCTTTGCCTCCC  1094
      ||||| ||| |  || |||| ||||| |||||| |||||  |||||||||
seq2  GGTCA-TCTTGGATCTAAACCTATAGAAGATCC-CTTTC--TTGCCTCCC  1091

seq1  AAGCGCTGGGATT-AAAGGAG  1114
      |||||| |||||| |||||||
seq2  AAGCGCCGGGATTAAAAGGAG  1112

seq1: chr16_4118812_4119852
seq2: B6Ng01-100L18.g_69_1099 (reverse)

seq1  AACAAACAAAACCCCCACAACCACAATCCATTTTACTTTATGTGTGAAGT  50
      |||||||  ||||||||||||||||||||| ||||||||||||  |||||
seq2  AACAAAC--AACCCCCACAACCACAATCCA-TTTACTTTATGTTGGAAGT  47

seq1  TTACCTAGAGGGAACAAGAAAAATTAAACACAAATTAAAAATTATAGGGC  100
      ||| ||||||||||| ||||||  |||||||||||  |||||||||||||
seq2  TTA-CTAGAGGGAAC-AGAAAA--TAAACACAAAT--AAAATTATAGGGC  91

seq1  AAACGGGAAATGGAAAGATGTATATTCTAGAATTCTAGTTTCCATCAACT  150
      ||||||||||||||||||||||||||||   |||||||||||||||||||
seq2  AAACGGGAAATGGAAAGATGTATATTCTTAGATTCTAGTTTCCATCAACT  141

seq1  AAGACAGGATCATGTCACAAAGGCTGGGGCTATATAAATACTGGTTGACC  200
       |||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TAGACAGGATCATGTCACAAA-GCTGGGGCTATATAAATACTGGTTGACC  190

seq1  AGGCTCCCTCAGTGAATGTACCTGTGAAACACCTGCCTGGGCTGCTGGTT  250
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGCTCCCTCAGTGAATGTACCTGTAAAACACCTGCCTGGGCTGCTGGTT  240

seq1  GCCCCATGCCCACACTGTTCACACTCATTGCCCCACTGGATGATGGAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCATGCCCACACTGTTCACACTCATTGCCCCACTGGATGATGGAAAC  290

seq1  TGGTTCTGTGGCAGAAACTGGTTCTGAGTAGGTGCCTGGGCCATAATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTCTGTGGCAGAAACTGGTTCTGAGTAGGTGCCTGGGCCATAATGTT  340

seq1  GTTGGCATGAGTGCCCATCATATTTGGAGGCTGAGGCATCCGTGAAGGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCATGAGTGCCCATCATATTTGGAGGCTGAGGCATCCGTGAAGGAG  390

seq1  AAATGGCCATCTATAAGACAAGAATCAGAAGTGTTAGGTCAGAGTCTTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGCCATCTATAAGACAAGAATCAGAAGTGTTAGGTCAGAGTCTTCA  440

seq1  AGAGATCACAGTACAGTGGAGATCCAAAGCCTTACAAATCTAGTACACTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCACAGTACAGTGGAGATCCAAAGCCTTACAAATCTAGTACACTT  490

seq1  TGGTTTTAAAGACCACTACTTCCCAGGGACTCCCCAGTTCCTAGGCACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTAAAGACCACTACTTCCCAGGGACTCCCCAGTTCCTAGGCACTT  540

seq1  TCTACAATTTCTCAAGTCAATGCTGAACTGTCTTCAGAATGGCAATCAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAATTTCTCAAGTCAATGCTGAACTGTCTTCAGAATGGCAATCAAT  590

seq1  AACATGCTGTCATTTTGAATTCAATCATGCCTTTAATTAGTTGCTGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGCTGTCATTTTGAATTCAATCATGCCTTTAATTAGTTGCTGATGT  640

seq1  GAACAGACACCAACAATATAAGCCATTGGCTGCCTGTTCCAATTCACTGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGACACCAACAATATAAGCCATTGGCTGCCTGTTCCAATTCACTGA  690

seq1  CAGCAAATACTTACAGAATTATTATTTTAAAAAAAAAATCAGCATTCAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAATACTTACAGAATTATTATTTTAAAAAAAAAATCAGCATTCAAA  740

seq1  TAGTCCTCATTATACCAACAATCCTGTTTGTTGGCTAGTTTAAGAAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCTCATTATACCAACAATCCTGTTTGTTGGCTAGTTTAAGAAAACA  790

seq1  AGGAAATAAAACAATGCTCAAATTTAAATGAATAAGTCCCCTAAAATTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAATAAAACAATGCTCAAATTTAAATGAATAAGTCCCCTAAAATTCT  840

seq1  CAGGTAACAATGGGGTATCCCTCCTTAGAGAACACTCTACTGAGCAAGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTAACAATGGGGTATCCCTCCTTAGAGAACACTCTACTGAGCAAGGA  890

seq1  CTGAGAGGAGGAGCACTTACACCCGGAACTGAGGCCATGCTGTTCATCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAGGAGGAGCACTTACACCCGGAACTGAGGCCATGCTGTTCATCTG  940

seq1  CACAGAGTGGTTCATAGGGGAGGCTGCACGAGGTCCCATGGGTGCCTGTG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGTGGTTCATAGGGGAGGCTGCACGAGGTCCCATGGGTGCCTGTG  990

seq1  GCAACTGGACGTTTCCCAGGGACATTGGGTTAAATGAATTC  1041
      |||||||||||||||||||||||||||||||||||||||||
seq2  GCAACTGGACGTTTCCCAGGGACATTGGGTTAAATGAATTC  1031