BAC Information

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BAC

Clone NameB6Ng01-101E07
Chromosome16 (Build37)
Map Location 47,332,138 - 47,426,126
singlet/doubletdoublet
Overlap genenone
Upstream genePvrl3, LOC628757
Downstream geneLOC628776, EG667741, EG639644, EG637273, Dppa4, Dppa2, EG433023
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E07.bB6Ng01-101E07.g
ACCDH910509DH910510
length1,1301,191
definitionDH910509|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E07, 5' end.DH910510|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,424,985 - 47,426,126)(47,332,138 - 47,333,337)
sequence
gaattcatagctactcatcaggatttcaggccaacgattaaatgctctta
taagaaacattacttctgctatatttatcagttaatgaaacaaggccata
ctcttagtacttaatatagcaattaaaatgttatagaccaccaagagaca
gattgttacaccttaatcagagtcaacctagacaaattagacagggaaaa
ctatcttttgctaggtgttggacttgctgggttttcagatattatgtaaa
agatgtaagtattaaaaataactttgatttttacagactctatagtatat
tatgcctcaagatactgtaattttaagaaccatttcctaaccactgtatt
gtttctgaaatgattacccagtattaatgatatttctttattaatttgaa
aaaaactacttcattgcttgaaatatcatgttttaaatttctgttatttt
acattttgacaagtgttgtccaactcgttaaaatgcttctaaatgcctgc
attatttaggttaacactggtttttatagatgtaaatttctctacagtac
cttgtcattacatcagaagtttactgacaacacctcactatatttattat
atgtttttctaaggaattaaatcatcaagcctacaaataaaattctttat
aaacatttacataaatataatataagcaaggaaaataagttataatacac
aaactcacacacaccgcatattgaaagtatacaaataaacttccttacct
agaaagatgcatttactaaaataaatcactagtttttaaacagaattttt
gcttaaccaacaagtggataatttatgttttgccatcaaacatgttctct
gctatctcagtgacaaagaaagtttgcataaatgctgaaagaaaaaaaac
atataaaagcatcaactctagacatcactgtggccatgtgtcatttcttt
aagtctccagggaatacatgatatttctcatattgaaaagcataagtttg
gttctgacctattcagtacagcatgattatgttaagatcactgtcactta
ataatatagtaatttagcatgcagagttgacttgtatgtttggtagttta
tgagtcttaccatctctaagattctgtgac
gaattcacacacacacacacacacacacacacacacacacacacacatgc
acactgtactcttattagtttattggattcctgaggtacttccccaaaag
gtgcagagaactaaagtgatggagtcacagtctgaatgtgaggagaaatg
catgacctttgcctgtctgggcctcagttgccttacactttcttgtaggc
tttatcattttattttctttagctgcatataatgacattttgttatccag
atgtagcacatttttactatccatgcttctactgaaggacatctaagctg
attctgtttcctctttaagatacatagaactacaatgaacttatcttaga
gtggttttaatctgtattctcttgagctcaggatattgaattttataaaa
agggttgcatagccatttggagttcgttggaaaactatctattcagctcc
atagaccattttaaaatattgtctatttgggtatttttcttgttttttga
atttagttttctggcttcccagttattctagttacaaatcctctccctga
cgatgaggtcaccaatattttgttccattctgtgagatacttctttacac
aattaacagttactttgaagttcaaaaagtctttgccgtttttgaaatca
cacttgtcaattgttgatcttgtgttccaagctatcagagtcatatccag
ataatgctcacctgtacctaaatgttgataataacccctgcttttccacc
atccgtttcaatgtatcaggtcttgtaattaggtctttgatatgttttca
gtttaattttctatttgcctgttcattttacatctggcacatctgtaaac
tgacatttggcctgtttcccatagtgcttcctaaacatagcttctgtgtt
ctggtttgtgtttgttagcttttcattctcaattcccactagaacatcag
ctgctttatgagctctcattgaagatggttctttttccacttactctttt
tgcttagaaatgcccaaactcaatgaagttgtgtactaagtaatatcagt
gtttttttctatctatcccaaggttaagatctctcagtccggctggagtg
gaagaaagagatctcgtttttgtttctctacacccgtgatctcgctgaga
gcttaaatcatctgtaacatcaatctagggccaatgcttca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_47424985_47426126
seq2: B6Ng01-101E07.b_48_1177 (reverse)

seq1  GTCACAAGAATCTATAGAGATGGTAAGACTCATAAAACTACACAACATAC  50
      ||||| ||||||| ||||||||||||||||||| |||||||  |||||||
seq2  GTCAC-AGAATCT-TAGAGATGGTAAGACTCAT-AAACTACCAAACATAC  47

seq1  AAGTCAACTTCCTGCATGCTAAATTACTATATTATTAAGTGACAGTGAAT  100
      |||||||||  |||||||||||||||||||||||||||||||||||| ||
seq2  AAGTCAACT--CTGCATGCTAAATTACTATATTATTAAGTGACAGTG-AT  94

seq1  CTAAACATAAATCATTGCTGTACTGAATAGGTCAGAACCAAACTTATGCT  150
      || ||||| ||||| |||||||||||||||||||||||||||||||||||
seq2  CTTAACAT-AATCA-TGCTGTACTGAATAGGTCAGAACCAAACTTATGCT  142

seq1  TTTCAATATGAGAAATATCATGTATTCCCTGGAGACTTAAAGAAATGGAC  200
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TTTCAATATGAGAAATATCATGTATTCCCTGGAGACTTAAAGAAAT-GAC  191

seq1  ACATGGCCACAGTGATGTCTAGAGTTGATGCTTTTATATGTTTTTTTTTC  250
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  ACATGGCCACAGTGATGTCTAGAGTTGATGCTTTTATATG-TTTTTTTTC  240

seq1  TTTCAGCATTTATGCAAACCTTTTCTTTGTCACTGAGATAGCAGAGAACA  300
      |||||||||||||||||||  |||||||||||||||||||||||||||||
seq2  TTTCAGCATTTATGCAAAC--TTTCTTTGTCACTGAGATAGCAGAGAACA  288

seq1  TGTTTGATGGCAAAACATAAATTATCCACTTGTTGGTTAAGCAAAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTGATGGCAAAACATAAATTATCCACTTGTTGGTTAAGCAAAAATTC  338

seq1  TGTTTAAAAACTAGTGATTTATTTTAGTAAATGCATCTTTCTAGGTAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAACTAGTGATTTATTTTAGTAAATGCATCTTTCTAGGTAAGG  388

seq1  AAGTTTATTTGTATACTTTCAATATGCGGTGTGTGTGAGTTTGTGTATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTATTTGTATACTTTCAATATGCGGTGTGTGTGAGTTTGTGTATTA  438

seq1  TAACTTATTTTCCTTGCTTATATTATATTTATGTAAATGTTTATAAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTATTTTCCTTGCTTATATTATATTTATGTAAATGTTTATAAAGAA  488

seq1  TTTTATTTGTAGGCTTGATGATTTAATTCCTTAGAAAAACATATAATAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTGTAGGCTTGATGATTTAATTCCTTAGAAAAACATATAATAAA  538

seq1  TATAGTGAGGTGTTGTCAGTAAACTTCTGATGTAATGACAAGGTACTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTGAGGTGTTGTCAGTAAACTTCTGATGTAATGACAAGGTACTGTA  588

seq1  GAGAAATTTACATCTATAAAAACCAGTGTTAACCTAAATAATGCAGGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTTACATCTATAAAAACCAGTGTTAACCTAAATAATGCAGGCAT  638

seq1  TTAGAAGCATTTTAACGAGTTGGACAACACTTGTCAAAATGTAAAATAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAGCATTTTAACGAGTTGGACAACACTTGTCAAAATGTAAAATAAC  688

seq1  AGAAATTTAAAACATGATATTTCAAGCAATGAAGTAGTTTTTTTCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATTTAAAACATGATATTTCAAGCAATGAAGTAGTTTTTTTCAAATT  738

seq1  AATAAAGAAATATCATTAATACTGGGTAATCATTTCAGAAACAATACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAATATCATTAATACTGGGTAATCATTTCAGAAACAATACAGT  788

seq1  GGTTAGGAAATGGTTCTTAAAATTACAGTATCTTGAGGCATAATATACTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGAAATGGTTCTTAAAATTACAGTATCTTGAGGCATAATATACTA  838

seq1  TAGAGTCTGTAAAAATCAAAGTTATTTTTAATACTTACATCTTTTACATA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGTCTGTAAAAATCAAAGTTATTTTTAATACTTACATCTTTTACATA  888

seq1  ATATCTGAAAACCCAGCAAGTCCAACACCTAGCAAAAGATAGTTTTCCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCTGAAAACCCAGCAAGTCCAACACCTAGCAAAAGATAGTTTTCCCT  938

seq1  GTCTAATTTGTCTAGGTTGACTCTGATTAAGGTGTAACAATCTGTCTCTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAATTTGTCTAGGTTGACTCTGATTAAGGTGTAACAATCTGTCTCTT  988

seq1  GGTGGTCTATAACATTTTAATTGCTATATTAAGTACTAAGAGTATGGCCT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGTCTATAACATTTTAATTGCTATATTAAGTACTAAGAGTATGGCCT  1038

seq1  TGTTTCATTAACTGATAAATATAGCAGAAGTAATGTTTCTTATAAGAGCA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCATTAACTGATAAATATAGCAGAAGTAATGTTTCTTATAAGAGCA  1088

seq1  TTTAATCGTTGGCCTGAAATCCTGATGAGTAGCTATGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATCGTTGGCCTGAAATCCTGATGAGTAGCTATGAATTC  1130

seq1: chr16_47332138_47333337
seq2: B6Ng01-101E07.g_68_1258

seq1  GAATTCACACACACACACACACACACACACACACACACACACACACATGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACACACACACACACACACACACACACACACACACACACATGC  50

seq1  ACACTGTACTCTTATTAGTTTATTGGATTCCTGAGGTACTTCCCCAAAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGTACTCTTATTAGTTTATTGGATTCCTGAGGTACTTCCCCAAAAG  100

seq1  GTGCAGAGAACTAAAGTGATGGAGTCACAGTCTGAATGTGAGGAGAAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGAACTAAAGTGATGGAGTCACAGTCTGAATGTGAGGAGAAATG  150

seq1  CATGACCTTTGCCTGTCTGGGCCTCAGTTGCCTTACACTTTCTTGTAGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGACCTTTGCCTGTCTGGGCCTCAGTTGCCTTACACTTTCTTGTAGGC  200

seq1  TTTATCATTTTATTTTCTTTAGCTGCATATAATGACATTTTGTTATCCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATCATTTTATTTTCTTTAGCTGCATATAATGACATTTTGTTATCCAG  250

seq1  ATGTAGCACATTTTTACTATCCATGCTTCTACTGAAGGACATCTAAGCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGCACATTTTTACTATCCATGCTTCTACTGAAGGACATCTAAGCTG  300

seq1  ATTCTGTTTCCTCTTTAAGATACATAGAACTACAATGAACTTATCTTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTTTCCTCTTTAAGATACATAGAACTACAATGAACTTATCTTAGA  350

seq1  GTGGTTTTAATCTGTATTCTCTTGAGCTCAGGATATTGAATTTTATAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTTTAATCTGTATTCTCTTGAGCTCAGGATATTGAATTTTATAAAA  400

seq1  AGGGTTGCATAGCCATTTGGAGTTCGTTGGAAAACTATCTATTCAGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTGCATAGCCATTTGGAGTTCGTTGGAAAACTATCTATTCAGCTCC  450

seq1  ATAGACCATTTTAAAATATTGTCTATTTGGGTATTTTTCTTGTTTTTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACCATTTTAAAATATTGTCTATTTGGGTATTTTTCTTGTTTTTTGA  500

seq1  ATTTAGTTTTCTGGCTTCCCAGTTATTCTAGTTACAAATCCTCTCCCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGTTTTCTGGCTTCCCAGTTATTCTAGTTACAAATCCTCTCCCTGA  550

seq1  CGATGAGGTCACCAATATTTTGTTCCATTCTGTGAGATACTTCTTTACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGAGGTCACCAATATTTTGTTCCATTCTGTGAGATACTTCTTTACAC  600

seq1  AATTAACAGTTACTTTGAAGTTCAAAAAGTCTTTGCCGTTTTTGAAATCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAACAGTTACTTTGAAGTTCAAAAAGTCTTTGCCGTTTTTGAAATCA  650

seq1  CACTTGTCAATTGTTGATCTTGTGTTCCAAGCTATCAGAGTCATATCCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGTCAATTGTTGATCTTGTGTTCCAAGCTATCAGAGTCATATCCAG  700

seq1  ATAATGCTCACCTGTACCTAAATGTTGATAATAACCCCTGCTTTTCCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGCTCACCTGTACCTAAATGTTGATAATAACCCCTGCTTTTCCACC  750

seq1  ATCCGTTTCAATGTATCAGGTCTTGTAATTAGGTCTTTGATATGTTTTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCGTTTCAATGTATCAGGTCTTGTAATTAGGTCTTTGATATGTTTTCA  800

seq1  GTTTAATTTTCTATTTGCCTGTTCATTTTACATCTGGCACATCTGTAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAATTTTCTATTTGCCTGTTCATTTTACATCTGGCACATCTGTAAAC  850

seq1  TGACATTTGGCCTGTTTCCCATAGTGCTTCCTAAACATAGCTTCTGTGTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATTTGGCCTGTTTCCCATAGTGCTTCCTAAACATAGCTTCTGTGTT  900

seq1  CTGGTTTTGTGTTTGTTTAGCTTTTCATTCTCAATTCCCACTAGAACATC  950
      |||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGG-TTTGTGTTTG-TTAGCTTTTCATTCTCAATTCCCACTAGAACATC  948

seq1  AGCTGCTTTAATGAGCTCTCATTGAAGATGGTTCTTTTTCCACTTACTCT  1000
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTTT-ATGAGCTCTCATTGAAGATGGTTCTTTTTCCACTTACTCT  997

seq1  TTTTGCTTAGAAATGCCCAAACTCAATGAAGGTTGTGTTACTAAGTAATA  1050
      |||||||||||||||||||||||||||||| |||||| ||||||||||||
seq2  TTTTGCTTAGAAATGCCCAAACTCAATGAA-GTTGTG-TACTAAGTAATA  1045

seq1  TCAGTGTTTTTTTCTATCTATCCCAAAGTTTAGA-CTCTCAGTCCGGCTG  1099
      |||||||||||||||||||||||||| ||| ||| |||||||||||||||
seq2  TCAGTGTTTTTTTCTATCTATCCCAAGGTTAAGATCTCTCAGTCCGGCTG  1095

seq1  GATGTGAAGAACAGA-TTCTCGTTTTTGTTTCCCT-CACCACGTGATTCT  1147
      ||   |||||| |||  ||||||||||||||| || |||| ||||||   
seq2  GAGTGGAAGAA-AGAGATCTCGTTTTTGTTTCTCTACACC-CGTGATCTC  1143

seq1  GCTGAAAGCTTAGATCCATCCTTAGTCACTTAATACTTAGTGCCAATGCT  1197
      ||||| |||||| || ||||    || || | | |  ||| |||||||||
seq2  GCTGAGAGCTTAAAT-CATC---TGTAACATCA-ATCTAGGGCCAATGCT  1188

seq1  TCA  1200
      |||
seq2  TCA  1191