BAC Information

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BAC

Clone NameB6Ng01-101P24
Chromosome16 (Build37)
Map Location 96,583,699 - 96,763,587
singlet/doubletdoublet
Overlap geneJam4, Itgb2l, Pcp4
Upstream geneErg, Ets2, LOC625548, LOC100040997, Dscr2, Brwd1, LOC100041318, Hmgn1, Wrb, 4921526F01Rik, Sh3bgr, B3galt5
Downstream geneDscam, Bace2, Mx1, ORF9, EG668559, LOC100041436, Mx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101P24.bB6Ng01-101P24.g
ACCDH911017DH911018
length982719
definitionDH911017|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P24, 5' end.DH911018|Mus musculus domesticus DNA, BAC clone: B6Ng01-101P24, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,583,699 - 96,584,673)(96,762,856 - 96,763,587)
sequence
gaattcaggggagggtctcaggatccagacgttgggaaagcggtctcctc
attccttagacaaacttgtaaaggccctctcccctcatggggagcacaat
gttctattgccactgggtattctgagagggcagattacgggagagtgagg
agtcgggaccctggtgagggaaaagaccccagggaagagggacaccacgg
tgaggaagcagttctgaacgcaggtgcacggagtttcgggttccatagtg
tagcggaaacgctgggactggaggaagccccttgctcagtggaactccag
ccaagcctactgtccccgagaagcccttggtccctgctccctgaaacaat
atattcagaccctttggaagtctcagtataaaatattttgagtagctcag
aaacgaggggttatgaggcagcagattcatggtctctctgtcaatctacg
ggggagacatgtcagattttctgagtgtttttttcccccttgtcaggcca
gtgaggagtgggtaggagattagcacaacttaataagacttatatttttg
gaacgatgacagtttttcaacataaagtaggttattcaaagctttccgag
gcaaaatgaatgagaagttgagtttcaggtttgggtcaaccccccacaga
ggtattattatctaaggatttctgacctaggcccccacttaattgaagtt
acatgtgtgactttttgtctacactgtaactatcccccttttgacatttg
tcaaccgtggcagcacagtctctcagaggctgtgtccatatgtatcacct
ttctgtgggcagtggtctcactgctgggcttctggctttctgcttctggc
cttgggacaactgtggggcagctgggaacagctgatgatgtgaaggtgtc
aggcagaaagcttccataggaagttcttcctgggtttagggatgtgccct
ttgctgtagccgtttcagcccatctatcagtg
gaattccatcaacatgaggaaattaaccaagaaaaggaaacatctgttca
cacaaagacagaaactctaacaggaagaaatatcaagtaaccgtcttagg
ggtaaaaaacaaaaaaagaaaagaaaagaaaagaaaatacactacatgat
gaaagatatactacatttgttttggaacaggaagaggagggaataaccca
gaaaattaaaaatcataaatatgccttgaaagaaatctagcactcaaata
atagtaagttcatggaaagtatatgtatccagtaaaagaaatgttagaaa
attcttaccactagagtaaaaaaaaaaatgtttgcattgaacgaatcatc
tttggattatattaaagttggcacaataatgaaaagaagcaagacatatg
ttttactgagagaacggggtaaagggaagatgggcagaggagatcaccat
gtaaggcatcatacagtacccaaagctgaaattgttagggcaagtcacat
aagcgtatctgagagagagatgctcaaagaaactgttgagagatgttgtt
ttggggaaatggagcttgaaaagggatggttgaaaaggcagagtgcggat
ttattttttgtaattcctattgaataatgtgacctttaaattagcatcaa
aacccagcagtgcatcaagaggggaagtgaatctgtttctcgggtaaaat
tttactcagttaaaaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_96583699_96584673
seq2: B6Ng01-101P24.b_52_1033

seq1  GAATTCAGGGGAGGGTCTCAGGATCCAGACGTTGGGAAAGCGGTCTCCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGGGAGGGTCTCAGGATCCAGACGTTGGGAAAGCGGTCTCCTC  50

seq1  ATTCCTTAGACAAACTTGTAAAGGCCCTCTCCCCTCATGGGGAGCACAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTTAGACAAACTTGTAAAGGCCCTCTCCCCTCATGGGGAGCACAAT  100

seq1  GTTCTATTGCCACTGGGTATTCTGAGAGGGCAGATTACGGGAGAGTGAGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTATTGCCACTGGGTATTCTGAGAGGGCAGATTACGGGAGAGTGAGG  150

seq1  AGTCGGGACCCTGGTGAGGGAAAAGACCCCAGGGAAGAGGGACACCACGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCGGGACCCTGGTGAGGGAAAAGACCCCAGGGAAGAGGGACACCACGG  200

seq1  TGAGGAAGCAGTTCTGAACGCAGGTGCACGGAGTTTCGGGTTCCATAGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAGCAGTTCTGAACGCAGGTGCACGGAGTTTCGGGTTCCATAGTG  250

seq1  TAGCGGAAACGCTGGGACTGGAGGAAGCCCCTTGCTCAGTGGAACTCCAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCGGAAACGCTGGGACTGGAGGAAGCCCCTTGCTCAGTGGAACTCCAG  300

seq1  CCAAGCCTACTGTCCCCGAGAAGCCCTTGGTCCCTGCTCCCTGAAACAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTACTGTCCCCGAGAAGCCCTTGGTCCCTGCTCCCTGAAACAAT  350

seq1  ATATTCAGACCCTTTGGAAGTCTCAGTATAAAATATTTTGAGTAGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCAGACCCTTTGGAAGTCTCAGTATAAAATATTTTGAGTAGCTCAG  400

seq1  AAACGAGGGGTTATGAGGCAGCAGATTCATGGTCTCTCTGTCAATCTACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGAGGGGTTATGAGGCAGCAGATTCATGGTCTCTCTGTCAATCTACG  450

seq1  GGGGAGACATGTCAGATTTTCTGAGTGTTTTTTTCCCCCTTGTCAGGCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAGACATGTCAGATTTTCTGAGTGTTTTTTTCCCCCTTGTCAGGCCA  500

seq1  GTGAGGAGTGGGTAGGAGATTAGCACAACTTAATAAGACTTATATTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGGAGTGGGTAGGAGATTAGCACAACTTAATAAGACTTATATTTTTG  550

seq1  GAACGATGACAGTTTTTCAACATAAAGTAGGTTATTCAAAGCTTTCCGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACGATGACAGTTTTTCAACATAAAGTAGGTTATTCAAAGCTTTCCGAG  600

seq1  GCAAAATGAATGAGAAGTTGAGTTTCAGGTTTGGGTCAACCCCCCACAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAATGAATGAGAAGTTGAGTTTCAGGTTTGGGTCAACCCCCCACAGA  650

seq1  GGTATTATTATCTAAGGATTTCTGACCTAGGCCCCCACTTAATTGAAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATTATTATCTAAGGATTTCTGACCTAGGCCCCCACTTAATTGAAGTT  700

seq1  ACATGTGTGAC-TTTTGTCTACACTGTAACTATCCCCCTTTTGACA-TTG  748
      ||||||||||| |||||||||||||||||||||||||||||||||| |||
seq2  ACATGTGTGACTTTTTGTCTACACTGTAACTATCCCCCTTTTGACATTTG  750

seq1  TCAACCGTGGCAGCACAGTCTCTCAGAGGCTGTGTCCATATGTATCACC-  797
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCAACCGTGGCAGCACAGTCTCTCAGAGGCTGTGTCCATATGTATCACCT  800

seq1  TTCTGT-GGCAGTGGTCTCACTGCT-GGCTTCTGGC-TTCTGCTTCTGGC  844
      |||||| |||||||||||||||||| |||||||||| |||||||||||||
seq2  TTCTGTGGGCAGTGGTCTCACTGCTGGGCTTCTGGCTTTCTGCTTCTGGC  850

seq1  C-TGGGACAACTGTGGGGCAGCTGGG-ACAGCTGATGATGTGAAGGTGTC  892
      | |||||||||||||||||||||||| |||||||||||||||||||||||
seq2  CTTGGGACAACTGTGGGGCAGCTGGGAACAGCTGATGATGTGAAGGTGTC  900

seq1  AGGCAGAAAGCTCCCAAAGGGAGTTCTTCCTGGGTTAAGGAATGTGCCCT  942
      |||||||||||| ||| ||| ||||||||||||||| ||| |||||||| 
seq2  AGGCAGAAAGCTTCCATAGGAAGTTCTTCCTGGGTTTAGGGATGTGCCC-  949

seq1  TTTGCTGTAGCCGTTCCAGCTCATCTATCAGTG  975
      ||||||||||||||| |||| ||||||||||||
seq2  TTTGCTGTAGCCGTTTCAGCCCATCTATCAGTG  982

seq1: chr16_96762856_96763587
seq2: B6Ng01-101P24.g_69_787 (reverse)

seq1  CATTTTTGAGCACCCTCTTCTAACTGAGTCTAATTTTACCAGAG-AACAG  49
      |||||||             |||||||||  ||||||||| ||| |||||
seq2  CATTTTT-------------TAACTGAGTAAAATTTTACCCGAGAAACAG  37

seq1  ATTCACTTCCCCTCTTGATGCACTGCTGGGTTTTGTTGCTAATTTTAAAG  99
      ||||||||||||||||||||||||||||||||||| |||||| |||||||
seq2  ATTCACTTCCCCTCTTGATGCACTGCTGGGTTTTGATGCTAA-TTTAAAG  86

seq1  GTCACATTATTCAATAGGATTTACAACAAATAAATCCGCACTCTGCCTTT  149
      ||||||||||||||||||| |||||| |||||||||||||||||||||||
seq2  GTCACATTATTCAATAGGAATTACAAAAAATAAATCCGCACTCTGCCTTT  136

seq1  TCAACCATCCCTTTTCAAGCTCCATTTCCCCAAAACAACATCTCTCAACA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACCATCCCTTTTCAAGCTCCATTTCCCCAAAACAACATCTCTCAACA  186

seq1  GTTTCTTTGAGCATCTCTCTCTCAGATACGCTTATGTGACTTGCCCTAAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTTGAGCATCTCTCTCTCAGATACGCTTATGTGACTTGCCCTAAC  236

seq1  AATTTCAGCTTTGGGTACTGTATGATGCCTTACATGGTGATCTCCTCTGC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCAGCTTTGGGTACTGTATGATGCCTTACATGGTGATCTCCTCTGC  286

seq1  CCATCTTCCCTTTACCCCGTTCTCTCAGTAAAACATATGTCTTGCTTCTT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTTCCCTTTACCCCGTTCTCTCAGTAAAACATATGTCTTGCTTCTT  336

seq1  TTCATTATTGTGCCAACTTTAATATAATCCAAAGATGATTCGTTCAATGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTATTGTGCCAACTTTAATATAATCCAAAGATGATTCGTTCAATGC  386

seq1  AAACATTTTTTTTTTTACTCTAGTGGTAAGAATTTTCTAACATTTCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTTTTTTTTTACTCTAGTGGTAAGAATTTTCTAACATTTCTTTT  436

seq1  ACTGGATACATATACTTTCCATGAACTTACTATTATTTGAGTGCTAGATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGATACATATACTTTCCATGAACTTACTATTATTTGAGTGCTAGATT  486

seq1  TCTTTCAAGGCATATTTATGATTTTTAATTTTCTGGGTTATTCCCTCCTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAAGGCATATTTATGATTTTTAATTTTCTGGGTTATTCCCTCCTC  536

seq1  TTCCTGTTCCAAAACAAATGTAGTATATCTTTCATCATGTAGTGTATTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTTCCAAAACAAATGTAGTATATCTTTCATCATGTAGTGTATTTT  586

seq1  CTTTTCTTTTCTTTTCTTTTTTTGTTTTTTACCCCTAAGACGGTTACTTG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTTTTCTTTTCTTTTTTTGTTTTTTACCCCTAAGACGGTTACTTG  636

seq1  ATATTTCTTCCTGTTAGAGTTTCTGTCTTTGTGTGAACAGATGTTTCCTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTCCTGTTAGAGTTTCTGTCTTTGTGTGAACAGATGTTTCCTT  686

seq1  TTCTTGGTTAATTTCCTCATGTTGATGGAATTC  732
      |||||||||||||||||||||||||||||||||
seq2  TTCTTGGTTAATTTCCTCATGTTGATGGAATTC  719