BAC Information

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BAC

Clone NameB6Ng01-103O23
Chromosome16 (Build37)
Map Location 29,883,900 - 30,048,864
singlet/doubletdoublet
Overlap geneGm1968, LOC100043102, 9030404E10Rik
Upstream gene1600021P15Rik, EG666717, Hrasls, Atp13a5, Atp13a4, Opa1
Downstream geneHes1, EG547263, 1700025H01Rik, LOC100043110, Cpn2, Lrrc15, Gp5, Atp13a3, Tmem44, Lsg1, BC022623, LOC100043122, AI480653
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103O23.bB6Ng01-103O23.g
ACCDH912378DH912379
length1,154327
definitionDH912378|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O23, 5' end.DH912379|Mus musculus domesticus DNA, BAC clone: B6Ng01-103O23, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(30,047,706 - 30,048,864)(29,883,900 - 29,884,225)
sequence
gaattccaaggcacgattagggtcttagggttggatttgggtgacatctc
cctccaccagggcagtgttggagaaatgtgggggcatcaggaaagggtag
ttggtctggttgacaggggagagttgggagcattggtatccatgtatttt
tttaaaataattttaaaaatttaatgtgttttgtatatctcttcacccat
atccccacccacctgcctatctatccatccatccatccatccatccatcc
atctccccatctacccattcatctctctccatccatctctctctctctaa
tttgtgtagcgcgcgtgtgtgtgtgtgatacccaaggaagctagaaaagg
gtgtcagatcccttgacactgcagtcacagatggttgtgagctcctatgt
ggatgctgggaactgaaccctggtgctctggaagagcagcaagtcatctg
cacttctgagccatctctctatccctgcataaacaaaattacattttgtg
tacgtgtgtttgtatgtgtgtacaacttgaaaatgtcagtctcccttttt
actgcgtggattctggggatggaccttgggttgttaggtttgtcggcaag
tatctgaggctttatatctgctgagctatcttgctgcccaccttttctgt
gttaccccaagaatctgtaagtgtggtaagttttagaaaggaaatgagag
aggatctgggtttccagagccatctctgcacactctgtcactgtgtactc
ctctgatgagcagacaccgccaggagaggtagaaactggtagactgtcaa
cttgacagggattgagaaacacccagaaggttggaaaagcacatctctct
gtgtgctcggagcacaactctgagggtgtctgtgatttgtttccagagac
agatcaagagggttccagacctaatgaatggattaacatgatgtcatgat
tgagagccggtaaaggtgggaggtgcgcctaatgaatgcaagtcacacag
tcgctgagggcgtgttctggagtcctgctctggtactgaatccctatcct
cagcttctggcctgctgtggtgtccgcttcccattacaatgaaaggaatc
tctgaaccggatccaagtcaatctctttgcccttcaactatttctcaggg
tttt
ctttttttttcccccctcctcaagaatcccttttgctttgaattgaattc
ctgactgcacagggttatgggggagggtgtactatggcaaatgaagtgta
gtggtgtgtgtgtgtgtgtgtgtgtgcgcacgtgtgtgcatctctgtgtg
ggtatgtttgtgtgtgtgatcacacagatacaagtaggttcaaagtcggc
aggatctgaagactgagaattcagtgcaaattcctctcctttaaataggt
ggtactgagggctcttttcaacctgagagactacaaaggtacctgacccg
tgagatgccttttatggtttctctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_30047706_30048864
seq2: B6Ng01-103O23.b_48_1201 (reverse)

seq1  AAAACACCTGAGAAAACAGTTTAGAAGAGCAA--AGATTGACTTGGGCTC  48
      ||||| |||||| ||| ||||  |||| ||||  |||||||||| || ||
seq2  AAAAC-CCTGAG-AAATAGTT--GAAGGGCAAAGAGATTGACTT-GGATC  45

seq1  AGTTTCAGAAGATTCCGTCCATTGTAATGGGGAAGGCGGAACACCACAGC  98
       | ||||| ||||||| | ||||||||||||  | |||| ||||||||||
seq2  CGGTTCAG-AGATTCCTTTCATTGTAATGGG--AAGCGG-ACACCACAGC  91

seq1  AGCCCGGAAGCTGA-GATAGGGATTCAGTA-CAGAGCCAGGACTCCAAGG  146
      || || |||||||| ||||||||||||||| ||||| ||||||||| || 
seq2  AGGCCAGAAGCTGAGGATAGGGATTCAGTACCAGAG-CAGGACTCC-AGA  139

seq1  ACACGCCCTCAGCGACTGTGTGAC-TGCATTCATTAGGGCGCACCTCCCA  195
      |||||||||||||||||||||||| ||||||||||| |||||||||||||
seq2  ACACGCCCTCAGCGACTGTGTGACTTGCATTCATTA-GGCGCACCTCCCA  188

seq1  CCTTTACCGGCTCTCAATCATGACATCATGTTAATCCATTCATTAGGTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTACCGGCTCTCAATCATGACATCATGTTAATCCATTCATTAGGTCT  238

seq1  GGAACCCTCTTGATCTGTCTCTGGAAACAAATCACAGACACCCTCAGAGT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACCCTCTTGATCTGTCTCTGGAAACAAATCACAGACACCCTCAGAGT  288

seq1  TGTGCTCCGAGCACACAGAGAGATGTGCTTATCCAACCTTCTGGGTGTTT  345
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGTGCTCCGAGCACACAGAGAGATGTGCTTTTCCAACCTTCTGGGTGTTT  338

seq1  CTCAAT-CCTGTCAAGTTGACAGTCTACCAGTTTCTACCTCTCCTGGCGG  394
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATCCCTGTCAAGTTGACAGTCTACCAGTTTCTACCTCTCCTGGCGG  388

seq1  TGTCTGCTCATCAGAGGAGTACACAGTGACAGAGTGTGCAGAGATGGCTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTGCTCATCAGAGGAGTACACAGTGACAGAGTGTGCAGAGATGGCTC  438

seq1  TGG-AACCCAGATCCTCTCTCATTTCCTTTCTAAAACTTACCACACTTAC  493
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAACCCAGATCCTCTCTCATTTCCTTTCTAAAACTTACCACACTTAC  488

seq1  AGATTCTTGGGGTAACACAGAAAAGGTGGGCAGCAAGATAGCTCAGCAGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTTGGGGTAACACAGAAAAGGTGGGCAGCAAGATAGCTCAGCAGA  538

seq1  TATAAAGCCTCAGATACTTGCCGACAAACCTAACAACCCAAGGTCCATCC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAGCCTCAGATACTTGCCGACAAACCTAACAACCCAAGGTCCATCC  588

seq1  CCAGAATCCACGCAGTAAAAAGGGAGACTGACATTTTCAAGTTGTACACA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAATCCACGCAGTAAAAAGGGAGACTGACATTTTCAAGTTGTACACA  638

seq1  CATACAAACACACGTACACAAAATGTAATTTTGTTTATGCAGGGATAGAG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAACACACGTACACAAAATGTAATTTTGTTTATGCAGGGATAGAG  688

seq1  AGATGGCTCAGAAGTGCAGATGACTTGCTGCTCTTCCAGAGCACCAGGGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCAGAAGTGCAGATGACTTGCTGCTCTTCCAGAGCACCAGGGT  738

seq1  TCAGTTCCCAGCATCCACATAGGAGCTCACAACCATCTGTGACTGCAGTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCCAGCATCCACATAGGAGCTCACAACCATCTGTGACTGCAGTG  788

seq1  TCAAGGGATCTGACACCCTTTTCTAGCTTCCTTGGGTATCACACACACAC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGATCTGACACCCTTTTCTAGCTTCCTTGGGTATCACACACACAC  838

seq1  ACGCGCGCTACACAAATTAGAGAGAGAGAGATGGATGGAGAGAGATGAAT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGCGCGCTACACAAATTAGAGAGAGAGAGATGGATGGAGAGAGATGAAT  888

seq1  GGGTAGATGGGGAGATGGATGGATGGATGGATGGATGGATGGATAGATAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAGATGGGGAGATGGATGGATGGATGGATGGATGGATGGATAGATAG  938

seq1  GCAGGTGGGTGGGGATATGGGTGAAGAGATATACAAAACACATTAAATTT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGTGGGTGGGGATATGGGTGAAGAGATATACAAAACACATTAAATTT  988

seq1  TTAAAATTATTTTAAAAAAATACATGGATACCAATGCTCCCAACTCTCCC  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATTATTTTAAAAAAATACATGGATACCAATGCTCCCAACTCTCCC  1038

seq1  CTGTCAACCAGACCAACTACCCTTTCCTGATGCCCCCACATTTCTCCAAC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCAACCAGACCAACTACCCTTTCCTGATGCCCCCACATTTCTCCAAC  1088

seq1  ACTGCCCTGGTGGAGGGAGATGTCACCCAAATCCAACCCTAAGACCCTAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCCTGGTGGAGGGAGATGTCACCCAAATCCAACCCTAAGACCCTAA  1138

seq1  TCGTGCCTTGGAATTC  1159
      ||||||||||||||||
seq2  TCGTGCCTTGGAATTC  1154

seq1: chr16_29883900_29884225
seq2: B6Ng01-103O23.g_74_400

seq1  CTTTTTTTTTCCCCCCTCCTCAAGAATCCCTTTTGCTTTGAATTGAATTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTTTTCCCCCCTCCTCAAGAATCCCTTTTGCTTTGAATTGAATTC  50

seq1  CTGACTGCACAGGGTTATGGGGGAGGGTGTACTATGGCAAATGAAGTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGCACAGGGTTATGGGGGAGGGTGTACTATGGCAAATGAAGTGTA  100

seq1  GTGGTGTGTGTGTGTGTGTGTGTGTGCGCACATGTGTGCATCTCTGTGTG  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GTGGTGTGTGTGTGTGTGTGTGTGTGCGCACGTGTGTGCATCTCTGTGTG  150

seq1  GGTATGTTTGTGTGTGTGATCACACAGATACAAGTAGGTTCAAAGTCGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTTTGTGTGTGTGATCACACAGATACAAGTAGGTTCAAAGTCGGC  200

seq1  AGGATCTGAAGACTGAGAATTCAGTGCAAATTCCTCTCCTTTAAATAGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATCTGAAGACTGAGAATTCAGTGCAAATTCCTCTCCTTTAAATAGGT  250

seq1  GGTACTGAGGGCTCTTTTCAACCTGAGAGACTACAAAGGTACCTGACCCG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACTGAGGGCTCTTTTCAACCTGAGAGACTACAAAGGTACCTGACCCG  300

seq1  TGAGATGCC-TTGATGGTTTCTCTCTC  326
      ||||||||| || ||||||||||||||
seq2  TGAGATGCCTTTTATGGTTTCTCTCTC  327