BAC Information

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BAC

Clone NameB6Ng01-103P18
Chromosome17 (Build37)16 (Build37)
Map Location 52,245,067 - 52,246,19669,520,917 - 69,521,313
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTbc1d5, LOC100043451, LOC100043452, Satb1, EG628919
Downstream geneLOC672987, EG328839, Kcnh8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-103P18.bB6Ng01-103P18.g
ACCDH912412DH912413
length1,132837
definitionDH912412|Mus musculus domesticus DNA, BAC clone: B6Ng01-103P18, 5' end.DH912413|Mus musculus domesticus DNA, BAC clone: B6Ng01-103P18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(52,245,067 - 52,246,196)(69,520,917 - 69,521,313)
sequence
gaattccacaacatatgcttgaagcattacaaaagaccatgttcgtcttt
caggtctgcttctgtctagtgtccaagacaaatgtgcacgttagcttctc
ctctagacgcttaactattatttcaccaggaaggagctttgctacatgga
cgtatacacgttatacgatatacactgttgatctgttttgcatggcctct
gatagtatagatcttgcactgtattgcagaaggagaagcctgggaagggt
agaagccattgactccatctcattgtgaggcattttactgctccaagtct
ggaggagaaactatgtgtataaataatacatacaaggacttcatgcttct
aaacagccttagaaaatctataaatctgatcccccaccctcagttaatgg
agtcttttccctcaccagattgctgtacgtgtgatagtgttctgaagttt
gctgaaaccctgtggaagtggcatgccatttctagtttaggtagcttgtc
ctgttgtccttggttaaattttctttgtagcctagttaaaacctggacac
ctgggagcttaaattatccctgaaggatattagtatattagctacctata
aaaatgaaatttatatgaggcatctgtttacattgagcgttccataaaac
tgcagccgagaattcaaaggaaaggctttcaaatgaaggtttcatagccg
agagcaaaaggctctggagagtggcatctagacagctaatttccattgta
gatattaaaaagaattttttaatagacaaagcacccccacactccctaca
atggcagtctaggatgtgcaaaagacttcaagaacccatcagtgtttaca
gtagacattttggtgttatttatcttatcgttgttactgcgttctgtaga
aaataaggaacagccttttaacattcgtctgttgacatacaactgagaac
ttggtgagcagaggaagacagctgcaaccgaatcccaacagtgacagatt
ggatcagtcaatttgtgggggcagaggagaagtagaagtcaacacgggca
tgaagactcgttcctttatttttcctccctttctccttggcttcctcccc
ctctaatgttcaatccctccctccattctttc
gaattcctcccaagaaatgggcttgctgtcattattcctacagctgcatg
attccagatcttaagtgcctggaggcagagcccaaaatacatccccagtt
ctgattgcatgggaacagctcccatgttcggagagataactaggtgttca
cccacacaatcagatgttcacaaacagcacacctgatagttcccacgtcg
gctttgtagaagtgtttttcttcaaaatggctgtgctgcctctcttagca
tcaaatagccctgaattggtaacagttctacacaagttaaggcctgtgtt
cataacaacgactacatcacacagccccaaacttcttaatgtttgctctt
atatgaaagtggtatgattgctaggccccagtgtagtctcactagagaca
gctatatcagggtcctatccgcacaatcttgctagtgtatgcaatggtgt
cagcgtttggaggctgattatgggatggatccctgcatatggcagtctct
agatggttcacccttttgtctcagctccaaactttgtctctgtaactcct
tccatgggtgttttggatgctcacagtcagctattggctggatcacagga
cccccaatggaggagctagagaaaatacccaaggagctaaagggatctgc
aaccctataggtggaacaacattatgaactaaccagtacctggagctctt
gactctagctgcatatgtatcaaaagatggcctagtcggccatcactgga
aagagaggcccattggacttgcaactttatatgccccagtacaggggaac
gccagggccaaagggtgggtaggggagttgtggggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr17_52245067_52246196
seq2: B6Ng01-103P18.b_45_1176

seq1  GAATTCCACAACATATGCTTGAAGCATTACAAAAGACCATGTTCGTCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACAACATATGCTTGAAGCATTACAAAAGACCATGTTCGTCTTT  50

seq1  CAGGTCTGCTTCTGTCTAGTGTCCAAGACAAATGTGCACGTTAGCTTCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCTGCTTCTGTCTAGTGTCCAAGACAAATGTGCACGTTAGCTTCTC  100

seq1  CTCTAGACGCTTAACTATTATTTCACCAGGAAGGAGCTTTGCTACATGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGACGCTTAACTATTATTTCACCAGGAAGGAGCTTTGCTACATGGA  150

seq1  CGTATACACGTTATACGATATACACTGTTGATCTGTTTTGCATGGCCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTATACACGTTATACGATATACACTGTTGATCTGTTTTGCATGGCCTCT  200

seq1  GATAGTATAGATCTTGCACTGTATTGCAGAAGGAGAAGCCTGGGAAGGGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGTATAGATCTTGCACTGTATTGCAGAAGGAGAAGCCTGGGAAGGGT  250

seq1  AGAAGCCATTGACTCCATCTCATTGTGAGGCATTTTACTGCTCCAAGTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGCCATTGACTCCATCTCATTGTGAGGCATTTTACTGCTCCAAGTCT  300

seq1  GGAGGAGAAACTATGTGTATAAATAATACATACAAGGACTTCATGCTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGAGAAACTATGTGTATAAATAATACATACAAGGACTTCATGCTTCT  350

seq1  AAACAGCCTTAGAAAATCTATAAATCTGATCCCCCACCCTCAGTTAATGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGCCTTAGAAAATCTATAAATCTGATCCCCCACCCTCAGTTAATGG  400

seq1  AGTCTTTTCCCTCACCAGATTGCTGTACGTGTGATAGTGTTCTGAAGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTTTCCCTCACCAGATTGCTGTACGTGTGATAGTGTTCTGAAGTTT  450

seq1  GCTGAAACCCTGTGGAAGTGGCATGCCATTTCTAGTTTAGGTAGCTTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAACCCTGTGGAAGTGGCATGCCATTTCTAGTTTAGGTAGCTTGTC  500

seq1  CTGTTGTCCTTGGTTAAATTTTCTTTGTAGCCTAGTTAAAACCTGGACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCTTGGTTAAATTTTCTTTGTAGCCTAGTTAAAACCTGGACAC  550

seq1  CTGGGAGCTTAAATTATCCCTGAAGGATATTAGTATATTAGCTACCTATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGCTTAAATTATCCCTGAAGGATATTAGTATATTAGCTACCTATA  600

seq1  AAAATGAAATTTATATGAGGCATCTGTTTACATTGAGCGTTCCATAAAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAAATTTATATGAGGCATCTGTTTACATTGAGCGTTCCATAAAAC  650

seq1  TGCAGCCGAGAATTCAAAGGAAAGGCTTTCAAATGAAGGTTTCATAGCCG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCGAGAATTCAAAGGAAAGGCTTTCAAATGAAGGTTTCATAGCCG  700

seq1  AGAGCAAAAGGCTCTGGAGAGTGGCATCTAGACAGCTAATTTCCATTGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCAAAAGGCTCTGGAGAGTGGCATCTAGACAGCTAATTTCCATTGTA  750

seq1  GATATTAAAAAGAA-TTTTTAATAGACAAAGCACCCCCACACTCCCTACA  799
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GATATTAAAAAGAATTTTTTAATAGACAAAGCACCCCCACACTCCCTACA  800

seq1  ATGGCAGTCTAGGATGTGCAAAAGACTTCAAGAACCCATCAGTGTTTACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCAGTCTAGGATGTGCAAAAGACTTCAAGAACCCATCAGTGTTTACA  850

seq1  GTAGACATTTTGGTGTTATTTATCTTATCGTTGTTACTGCGTTCTGTAGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACATTTTGGTGTTATTTATCTTATCGTTGTTACTGCGTTCTGTAGA  900

seq1  AAATAAGGGAACAGCCTTTTAACATTCGTCTGTTGACATACAACTGAGAA  949
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAA-GGAACAGCCTTTTAACATTCGTCTGTTGACATACAACTGAGAA  949

seq1  CTTGGTGAGCAGGAGGAAGACAGCTGCAACCGAAT-CCAACAGTGACAGA  998
      ||||||||||| ||||||||||||||||||||||| ||||||||||||||
seq2  CTTGGTGAGCA-GAGGAAGACAGCTGCAACCGAATCCCAACAGTGACAGA  998

seq1  TTGGATCAGTCAATTTGTGGGGGCAGAGGAGAAGGTAG-AGTCAACACGG  1047
      ||||||||||||||||||||||||||||||||| |||| ||||||||| |
seq2  TTGGATCAGTCAATTTGTGGGGGCAGAGGAGAA-GTAGAAGTCAACAC-G  1046

seq1  GGCATGAAGGACTTCTTTTCTTTA-TTTTCCTTCCTTTCT-CTTGTCTTC  1095
      |||||||| ||| || || ||||| ||||||| ||||||| |||| ||||
seq2  GGCATGAA-GAC-TCGTTCCTTTATTTTTCCTCCCTTTCTCCTTGGCTTC  1094

seq1  --TCCCCTCT-ATGTTCAGTCCCTTCCTCTCTTCTTTC  1130
         ||||||| ||||||| ||||| ||||  |||||||
seq2  CTCCCCCTCTAATGTTCAATCCCTCCCTCCATTCTTTC  1132

seq1: chr16_69520917_69521313
seq2: B6Ng01-103P18.g_608_906 (reverse)

seq1  CCCCC---ACTCCCCTAACCACCCACTCCCCCTTTTTGGCCCTGGCGTTC  47
      |||||   ||||||||| ||||||          ||||||||||||||||
seq2  CCCCCACAACTCCCCTACCCACCC----------TTTGGCCCTGGCGTTC  40

seq1  CCCTGTACTGGGGCATATAAAGTTTGCGTGTCCAATGGGCCTCTCTTTCC  97
      |||||||||||||||||||||| ||||  |||||||||||||||||||||
seq2  CCCTGTACTGGGGCATATAAAG-TTGCAAGTCCAATGGGCCTCTCTTTCC  89

seq1  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATGGCCGACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAG  139

seq1  AGCTCCGGGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGTGTTGC  197
      ||||||  |||||||||||||||||||||||||||||||||||| |||||
seq2  AGCTCC-AGGTACTGGTTAGTTCATAATGTTGTTCCACCTATAGGGTTGC  188

seq1  AGATCCCTTTAGCTCCTTGGGTGCTTTCTCTAGCTCCTCCATTGGGAGCC  247
      ||||||||||||||||||||||  |||||||||||||||||||||| | |
seq2  AGATCCCTTTAGCTCCTTGGGTATTTTCTCTAGCTCCTCCATTGGGGGTC  238

seq1  CTGTGATCCATCCTTTAGCTGACTGTGAGCATCCACTTCTGTGTTTGCTA  297
      |||||||||| ||  |||||||||||||||||||                
seq2  CTGTGATCCAGCCAATAGCTGACTGTGAGCATCC----------------  272

seq1  GGCCCCGGCATAGTTTCACAAGAGACAGCTACATCTGGGTCCTTACAATA  347
                                                       |
seq2  -------------------------------------------------A  273

seq1  AAATCTTGCTAGTGTATGCAATGGTGTCACCCATGGAAGGAGTTACAGAG  397
      |||                        |||||||||||||||||||||||
seq2  AAA------------------------CACCCATGGAAGGAGTTACAGAG  299