BAC Information

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BAC

Clone NameB6Ng01-104D01
Chromosome16 (Build37)
Map Location 87,964,276 - 88,134,719
singlet/doubletdoublet
Overlap geneGrik1
Upstream geneN6amt1, Zfp294, ORF5, LOC100040088, Usp16, Cct8, B130034C11Rik, LOC435486, ORF63, Bach1, LOC100039901
Downstream geneEG622373, Cldn17, Cldn8, Gm312, 2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047, 4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104D01.bB6Ng01-104D01.g
ACCDH912562DH912563
length6441,076
definitionDH912562|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D01, 5' end.DH912563|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,964,276 - 87,964,919)(88,133,632 - 88,134,719)
sequence
gaattctttgggcaatggatgacagttaatacagaaacacacaaggggtc
aaagtagagagaaaaagccatggtagattgttaatccatttttgagcact
agcattatatctgttcccctccaaggtcagaaaacgttgtggaagaggga
gcagaaatgttctaggagctggaggctgtccaaggatgcagtgaaataat
gtttctggacatgatgggactggtgtgtctatgatctcaaagcagctaag
gctgcaggccaagatcaagagtgtcatggttccagcatagaatggcgagg
ggctcattaagccccacccttacccgaggagctagtgacagctgatgacc
agccatggcaggaggaagagtcagttttcattaagaatatcactgctggc
tggtcatccatgctaaaatggatagccccacactcacagatctatggaaa
gtattatctggactctgtgggttaagttttttttttaaatgacatgaagt
ggaacttgtggttctagctgtatatgtagcagaggatggcctagtcagtc
atcaatgtgaggagaggccctcggtcctgtgaaggttctatgccccagta
taggggagtggcaggactgggaatgggagtgggagggttgggga
gaattccatgtgttctgtgagcttgtttatagccccagaaagatgaaact
acttggaagaaaatacttagtattgtagtctcaaggaggcttagaagagg
gtaggggagagatttccaagtacatgctttccttttggagaccatgaagt
acctccctggtcctccggtgaggtagtttgggataaatccccatgacaag
gcacataatactcatagactcctccctctgggtgggaagaggacacacta
gaaaggggagctgttccggccatgccaacaaatatttgatcaactgcatg
atttgatttttgtcaatggaataaaatctaaaacacgttgtgagtgtcat
ctaaagctctgcttgactttcacctgtgtcctatgacatttatgactttg
gctaacttagggaagatcgtaactggatatctcccaaagtcgaggtcttc
ccacatgagaccagttctccacagctttttgtttgtttgtttctgtcatc
tttattttttactagccagcaatgacaactaggaagagatacacattttt
ttaaggaagaaaattccagtattcctagcctaatgtgggcatcacagtat
tgatcccttgctgtaatatggcttctttaaagacaagttaggaggtgggg
aactaaggaaagaaaaaggcagtaaaatctttgctgctgcccatggccag
tgattgctgacagctctgtgccagggtgtctgtctccacagcaggcttgc
agcattctttattgtggttgtttagctgtgccctttgcttcttcgccaaa
gtagcccccattggtgataactaacaatgtctcctaaaactgccacaata
ttgggacaaataaaatttgctcgtgatcataactactaccttaataataa
gaacactttttcagaaagtttcatgttaaggctctatctaagtgcagaat
atgctgtgagcaccctgaggtcctgagacacttctcttagataaagcttc
aacttgcaggacagtggtttaaaataataacactaaaaaacaacatagca
cgtgaagatatgtggagagctctgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_87964276_87964919
seq2: B6Ng01-104D01.b_45_688

seq1  GAATTCTTTGGGCAATGGATGACAGTTAATACAGAAACACACAAGGGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGGGCAATGGATGACAGTTAATACAGAAACACACAAGGGGTC  50

seq1  AAAGTAGAGAGAAAAAGCCATGGTAGATTGTTAATCCATTTTTGAGCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTAGAGAGAAAAAGCCATGGTAGATTGTTAATCCATTTTTGAGCACT  100

seq1  AGCATTATATCTGTTCCCCTCCAAGGTCAGAAAACGTTGTGGAAGAGGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTATATCTGTTCCCCTCCAAGGTCAGAAAACGTTGTGGAAGAGGGA  150

seq1  GCAGAAATGTTCTAGGAGCTGGAGGCTGTCCAAGGATGCAGTGAAATAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAATGTTCTAGGAGCTGGAGGCTGTCCAAGGATGCAGTGAAATAAT  200

seq1  GTTTCTGGACATGATGGGACTGGTGTGTCTATGATCTCAAAGCAGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTGGACATGATGGGACTGGTGTGTCTATGATCTCAAAGCAGCTAAG  250

seq1  GCTGCAGGCCAAGATCAAGAGTGTCATGGTTCCAGCATAGAATGGCGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCAGGCCAAGATCAAGAGTGTCATGGTTCCAGCATAGAATGGCGAGG  300

seq1  GGCTCATTAAGCCCCACCCTTACCCGAGGAGCTAGTGACAGCTGATGACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATTAAGCCCCACCCTTACCCGAGGAGCTAGTGACAGCTGATGACC  350

seq1  AGCCATGGCAGGAGGAAGAGTCAGTTTTCATTAAGAATATCACTGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATGGCAGGAGGAAGAGTCAGTTTTCATTAAGAATATCACTGCTGGC  400

seq1  TGGTCATCCATGCTAAAATGGATAGCCCCACACTCACAGATCTATGGAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATCCATGCTAAAATGGATAGCCCCACACTCACAGATCTATGGAAA  450

seq1  GTATTATCTGGACTCTGTGGGTTAAGTTTTTTTTTTAAATGACATGAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATCTGGACTCTGTGGGTTAAGTTTTTTTTTTAAATGACATGAAGT  500

seq1  GGAACTTGTGGTTCTAGCTGTATATGTAGCAGAGGATGGCCTAGTCAGTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTTGTGGTTCTAGCTGTATATGTAGCAGAGGATGGCCTAGTCAGTC  550

seq1  ATCAATGTGAGGAGAGGCCCTCGGTCCTGTGAAGGTTCTATGCCCCAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATGTGAGGAGAGGCCCTCGGTCCTGTGAAGGTTCTATGCCCCAGTA  600

seq1  TAGGGGAGTGGCAGGACTGGGAATGGGAGTGGGAGGGTTGGGGA  644
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAGTGGCAGGACTGGGAATGGGAGTGGGAGGGTTGGGGA  644

seq1: chr16_88133632_88134719
seq2: B6Ng01-104D01.g_68_1143 (reverse)

seq1  GGCAGAGCTCTCCACTTCTCTTTCACGTTGCTTTTGTTGTTTTTTTGTTG  50
      ||||||||||||||| | || |||||| ||| | ||||||||||| ||  
seq2  GGCAGAGCTCTCCACATATC-TTCACG-TGC-TATGTTGTTTTTTAGTGT  47

seq1  TTTTATTTTTTTTAAACCACTGTTCTTGCCAGTTGAAAGCTTTATCTAAG  100
      | |||    ||||||||||||| || ||| ||||| ||||||||||||||
seq2  TATTA----TTTTAAACCACTG-TCCTGCAAGTTG-AAGCTTTATCTAAG  91

seq1  AGAAGTGTTCTTCAGGACCTCAGGGTGCTCACAGCATATTCTGCACTTAG  150
      ||||||||   |||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTGT--CTCAGGACCTCAGGGTGCTCACAGCATATTCTGCACTTAG  139

seq1  ATAGAGGCCTTAACATTGAATCTTTCTGGAAAAGTTGTTCTTATTA-TAA  199
      ||||| ||||||||| |||| ||||||| ||||| ||||||||||| |||
seq2  ATAGA-GCCTTAACA-TGAAACTTTCTGAAAAAG-TGTTCTTATTATTAA  186

seq1  GGTAGTAGTTATTGATCACGAGC-AATTTTATTTGTCCCAATATTGTGGC  248
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  GGTAGTAGTTA-TGATCACGAGCAAATTTTATTTGTCCCAATATTGTGGC  235

seq1  AGTTTTAGGAGACATTGTTAGTTATCACCAATGGGGGCTACTTTGGCGAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTAGGAGACATTGTTAGTTATCACCAATGGGGGCTACTTTGGCGAA  285

seq1  GAAGCAAAGGGCACAGCTAAACAACCACAATAAAGAATGCTGCAAGCCTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAAAGGGCACAGCTAAACAACCACAATAAAGAATGCTGCAAGCCTG  335

seq1  CTGTGGAGACAGACACCCTGGCACAGAGCTGTCAGCAATCACTGGCCATG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAGACAGACACCCTGGCACAGAGCTGTCAGCAATCACTGGCCATG  385

seq1  GGCAGCAGC-AAGATTTTACTGCCTTTTTCTTTCCTTAGTTCCCCACCTC  447
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCAGCAAAGATTTTACTGCCTTTTTCTTTCCTTAGTTCCCCACCTC  435

seq1  CTAACTTGTCTTTAAAGAAGCCATATTACAGCAAGGGATCAATACTGTGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTGTCTTTAAAGAAGCCATATTACAGCAAGGGATCAATACTGTGA  485

seq1  TGCCCACATTAGGCTAGGAATACTGGAATTTTCTTCCTTAAAAAAATGTG  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCACATTAGGCTAGGAATACTGGAATTTTCTTCCTTAAAAAAATGTG  535

seq1  TATCTCTTCCTAGTTGTCATTGCTGGCTAGTAAAAAATAAAGATGACAGA  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCTTCCTAGTTGTCATTGCTGGCTAGTAAAAAATAAAGATGACAGA  585

seq1  AACAAACAAACAAAAAGCTGTGGAGAACTGGTCTCATGTGGGAAGACCTC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAACAAACAAAAAGCTGTGGAGAACTGGTCTCATGTGGGAAGACCTC  635

seq1  GACTTTGGGAGATATCCAGTTACGATCTTCCCTAAGTTAGCCAAAGTCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGGGAGATATCCAGTTACGATCTTCCCTAAGTTAGCCAAAGTCAT  685

seq1  AAATGTCATAGGACACAGGTGAAAGTCAAGCAGAGCTTTAGATGACACTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCATAGGACACAGGTGAAAGTCAAGCAGAGCTTTAGATGACACTC  735

seq1  ACAACGTGTTTTAGATTTTATTCCATTGACAAAAATCAAATCATGCAGTT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACGTGTTTTAGATTTTATTCCATTGACAAAAATCAAATCATGCAGTT  785

seq1  GATCAAATATTTGTTGGCATGGCCGGAACAGCTCCCCTTTCTAGTGTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAAATATTTGTTGGCATGGCCGGAACAGCTCCCCTTTCTAGTGTGTC  835

seq1  CTCTTCCCACCCAGAGGGAGGAGTCTATGAGTATTATGTGCCTTGTCATG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCCACCCAGAGGGAGGAGTCTATGAGTATTATGTGCCTTGTCATG  885

seq1  GGGATTTATCCCAAACTACCTCACCGGAGGACCAGGGAGGTACTTCATGG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTTATCCCAAACTACCTCACCGGAGGACCAGGGAGGTACTTCATGG  935

seq1  TCTCCAAAAGGAAAGCATGTACTTGGAAATCTCTCCCCTACCCTCTTCTA  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAAAAGGAAAGCATGTACTTGGAAATCTCTCCCCTACCCTCTTCTA  985

seq1  AGCCTCCTTGAGACTACAATACTAAGTATTTTCTTCCAAGTAGTTTCATC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCCTTGAGACTACAATACTAAGTATTTTCTTCCAAGTAGTTTCATC  1035

seq1  TTTCTGGGGCTATAAACAAGCTCACAGAACACATGGAATTC  1088
      |||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGGGGCTATAAACAAGCTCACAGAACACATGGAATTC  1076