This page provides previous versions of nucleotide polymorphisms of MSM/Ms and JF1/Ms strains, corresponding to GRCm38 coordinate by Liftover from GRCm37.
Previous ver.
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RIKEN MSM/Ms Mouse BAC clones & Library
BAC clone ordering.
BAC Information
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Search Parameter
BAC name
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Search Result
BAC
Clone Name
B6Ng01-104D10
Chromosome
16 (Build37)
Map Location
47,397,925 - 47,585,205
singlet/doublet
doublet
Overlap gene
none
Upstream gene
Pvrl3
,
LOC628757
Downstream gene
LOC628776
,
EG667741
,
EG639644
,
EG637273
,
Dppa4
,
Dppa2
,
EG433023
,
Morc1
Link
Open Mouse BAC browser
Click to get alignment info.
name
Pvrl3
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:58998
MGI:1930171
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs
name
LOC628757
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:628757
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 5 Proteins
pseudo
: _no_value
name
LOC628776
(CDS detail)
type
gene
link
vega
ensembl
xref
GeneID:628776
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein
pseudo
: _no_value
name
EG667741
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:667741
MGI:3646652
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
name
EG639644
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:639644
MGI:3643404
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 14 Proteins
pseudo
: _no_value
name
EG637273
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:637273
MGI:3645884
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 608 ESTs, 24 Proteins
name
Dppa4
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:73693
MGI:2157525
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs
name
Dppa2
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:73703
MGI:2157523
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
EG433023
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:433023
MGI:3647875
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs
name
Morc1
(CDS detail)
type
gene
link
vega
ensembl
MGI
xref
GeneID:17450
MGI:1316740
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
name
Pvrl3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:12957493
GeneID:58998
MGI:1930171
definition
exception
: unclassified transcription discrepancy
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: poliovirus receptor-related 3
transcript_id
: NM_021496.1
name
Pvrl3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:12957495
GeneID:58998
MGI:1930171
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: poliovirus receptor-related 3
transcript_id
: NM_021497.1
name
Pvrl3
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:118130458
GeneID:58998
MGI:1930171
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: poliovirus receptor-related 3
transcript_id
: NM_021495.2
name
EG667741
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94400234
GeneID:667741
MGI:3646652
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 6 Proteins
product
: predicted gene, EG667741
transcript_id
: XM_992128.1
name
EG637273
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94400194
GeneID:637273
MGI:3645884
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 12 mRNAs, 608 ESTs, 24 Proteins
product
: predicted gene, EG637273, transcript variant 2
transcript_id
: XM_001003388.1
name
Dppa4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:63079712
GeneID:73693
MGI:2157525
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: developmental pluripotency associated 4
transcript_id
: NM_028610.2
name
Dppa4
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:63079714
GeneID:73693
MGI:2157525
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: developmental pluripotency associated 4
transcript_id
: NM_001018002.1
name
Dppa2
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:58037334
GeneID:73703
MGI:2157523
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: developmental pluripotency associated 2
transcript_id
: NM_028615.1
name
EG433023
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:94400237
GeneID:433023
MGI:3647875
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs
product
: predicted gene, EG433023
transcript_id
: XM_488780.3
name
Morc1
(CDS detail)
type
mRNA
link
vega
ensembl
MGI
NCBI
xref
GI:7106358
GeneID:17450
MGI:1316740
definition
note
: Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA
product
: microrchidia 1
transcript_id
: NM_010816.1
name
Pvrl3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12957494
CCDS:CCDS28204.1
GeneID:58998
MGI:1930171
definition
GO_component
: GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]
GO_process
: GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]
codon_start
: 1
note
: isoform beta is encoded by transcript variant beta; nectin-3
product
: poliovirus receptor-related 3 isoform beta
protein_id
: NP_067471.1
name
Pvrl3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12957496
CCDS:CCDS28205.1
GeneID:58998
MGI:1930171
definition
GO_component
: GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]
GO_process
: GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]
codon_start
: 1
note
: isoform gamma is encoded by transcript variant gamma; nectin-3
product
: poliovirus receptor-related 3 isoform gamma
protein_id
: NP_067472.1
name
Pvrl3
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:12957492
CCDS:CCDS28206.1
GeneID:58998
MGI:1930171
definition
GO_component
: GO:0005913 - cell-cell adherens junction [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]
GO_function
: GO:0005515 - protein binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]
GO_process
: GO:0007155 - cell adhesion [Evidence IDA]; GO:0016337 - cell-cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]
codon_start
: 1
note
: isoform alpha is encoded by transcript variant alpha; nectin-3
product
: poliovirus receptor-related 3 isoform alpha
protein_id
: NP_067470.1
name
EG667741
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94400235
GeneID:667741
MGI:3646652
definition
codon_start
: 1
product
: hypothetical protein
protein_id
: XP_997222.1
name
EG637273
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:94400195
GeneID:637273
MGI:3645884
definition
codon_start
: 1
product
: similar to MSP23 isoform 2
protein_id
: XP_001003388.1
name
Dppa4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:63079713
CCDS:CCDS28209.1
GeneID:73693
MGI:2157525
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
codon_start
: 1
note
: isoform 1 is encoded by transcript variant 1
product
: developmental pluripotency associated 4 isoform 1
protein_id
: NP_082886.2
name
Dppa4
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:63079715
CCDS:CCDS28208.1
GeneID:73693
MGI:2157525
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
codon_start
: 1
note
: isoform 2 is encoded by transcript variant 2
product
: developmental pluripotency associated 4 isoform 2
protein_id
: NP_001018002.1
name
Dppa2
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:58037335
GeneID:73703
MGI:2157523
definition
GO_component
: GO:0005634 - nucleus [Evidence IEA]
GO_function
: GO:0003677 - DNA binding [Evidence IEA]
codon_start
: 1
product
: developmental pluripotency-associated 2
protein_id
: NP_082891.1
name
EG433023
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:51769651
GeneID:433023
MGI:3647875
definition
codon_start
: 1
product
: similar to hCG2039034
protein_id
: XP_488780.1
name
Morc1
(CDS detail)
type
CDS
link
vega
ensembl
MGI
NCBI
xref
GI:7106359
GeneID:17450
MGI:1316740
definition
GO_component
: GO:0005634 - nucleus [Evidence IDA]
GO_function
: GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA]
GO_process
: GO:0030154 - cell differentiation [Evidence IEA]; GO:0007275 - development [Evidence IEA]; GO:0007283 - spermatogenesis [Evidence IMP]
codon_start
: 1
note
: microrchidia
product
: MORC
protein_id
: NP_034946.1
name
LOC628757
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628757
definition
number
: 1
pseudo
: _no_value
name
LOC628757
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628757
definition
number
: 2
pseudo
: _no_value
name
LOC628757
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628757
definition
number
: 3
pseudo
: _no_value
name
LOC628776
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628776
definition
number
: 1
pseudo
: _no_value
name
LOC628776
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628776
definition
number
: 2
pseudo
: _no_value
name
LOC628776
(CDS detail)
type
exon
link
vega
ensembl
xref
GeneID:628776
definition
number
: 3
pseudo
: _no_value
name
EG639644
(CDS detail)
type
misc_RNA
link
vega
ensembl
MGI
NCBI
xref
GI:94400236
GeneID:639644
MGI:3643404
definition
note
: Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 14 Proteins
product
: predicted gene, EG639644
pseudo
: _no_value
transcript_id
: XR_002068.1
clone name
MSMg01-366I10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-519C01
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-424F17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-340F05
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-300E22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-110M02
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-420I02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-173K20
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-426G12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-374O07
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-324N18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-373D14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-186I22
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-522A13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-115K10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-115K11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-437A14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-446O02
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-272K05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-467N18
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386L18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-362J21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-467O10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-350D08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-424N19
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-302O15
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-439H20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-343H09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-079C04
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-294H17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-482D23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-496J03
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-382I17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163G19
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-163M24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-323K12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-505I11
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-269P16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-386H15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-377H07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-435O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-400K18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-158A15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-150J17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494H10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-495I07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-124C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-118G06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-218E18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-485D05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-078H10
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-490I13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-291M12
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-179D01
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-388F21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-066N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-060K23
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-509H13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-193M16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-061N21
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-057J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-460K15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-369E05
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-133G03
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-130F14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-391C08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-494H14
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-097O16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-412N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-430P15
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-059B20
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-534H13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-148J18
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-117B06
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-098I14
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-140E17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-367O10
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-339C13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-503K16
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-459D24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-142O07
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-407N08
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-270B17
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-530P21
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-304B17
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-440N09
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-173A24
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-475P11
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-520G16
singlet/doublet
doublet
plural/unique
plural
clone name
MSMg01-064K13
singlet/doublet
singlet
plural/unique
unique
clone name
MSMg01-451F13
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-338K06
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-435J16
singlet/doublet
doublet
plural/unique
unique
clone name
MSMg01-095N18
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