BAC Information

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BAC

Clone NameB6Ng01-104D15
Chromosome11 (Build37)16 (Build37)
Map Location 88,931,799 - 88,932,09317,052,885 - 17,053,928
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneCuedc1, Mrps23, 1700106J16Rik, LOC668793, Msi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik
Downstream geneGm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp, Tmem100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104D15.bB6Ng01-104D15.g
ACCDH912588DH912589
length4201,047
definitionDH912588|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D15, 5' end.DH912589|Mus musculus domesticus DNA, BAC clone: B6Ng01-104D15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(88,931,799 - 88,932,093)(17,052,885 - 17,053,928)
sequence
ttcatactaataaaagagagtaaggtacagcctcctgtagtagtcctaac
tactaaaggcacaagtgggatgattggctgtacttgaagatttgaagcca
gcttcttaaaaaaaaaaaaatttttttttttttgttttttcgagacaggg
tttctctgtatagccctagctgtcctggaactcactttgtagaccaggct
ggcctcgaactcagaaatctgcctgcctctgcctcccgagtgctgggatt
aaaggcatgcgccaccacgcaccgggtgaagccagcttcttaaaagaatt
taaagaaagaaaatcaagctgggcattgtggagcatgattttaattccag
cactcagtaggcaaggagggcagatctctagaagttggaggccagcctgg
tctatatagagagttccagg
gaattcagtccttggagcccggaaggaggaaggagagagccaactccttc
aagttgtccctggaccagaggatctgaggagagaactggagcatcaggtt
tccaaccacagatccatctttgctggcctgattttgtgggttttgtttat
tttctgatttcacacaaactaccacagatgacagtgcagagagctaattg
gtctcttggagctggagactgagttaagattcaaaagtacaggggctaga
gagatgccttcatggttaagagcagtggctgctcttccagaggtcctgag
ttcaattcccaacaaccacatggtgggtcacaaccatctgtaatgggagc
agatgccctcttctggtgtgtctgaagacagtgacagtgtgctcatacat
aaaataaatcttctttttaagaaaaagattaaaaactacaacttgcctca
tttccagcttaacaaccaaagaagaacattatgatgcacttaagtgagca
gagcctaccgatcacctgtcagggaaataacaactgagaagatgaggtca
ctttcattgaataatcctattttgtcattagttttgcttttagtaattgg
aacggtaaaacaagtgctatacagctgtaaagtagttatgtgcccaggca
gtggtggcgcacgcctttaattccagcactcaggaggcagaagcaggcag
atctctttgttactttgaggccaacctagtctacaaagtgagatctagga
cagccagggctacataccttggactagagagaggggctcagccgttaaag
gttgggctcacaaccataaatataagagaaaccttgtcttggaaaaccaa
agcctcgtagcggtggtgtgtgccttgcactgtttgtggcactgcaagta
aatgcagttatctggcttggctgctgtatttggcctcagaaagattgagt
ttaactcaaggacagtggatttattacttgggatattcttgatgatatga
aaaagagctgttagtagccatggcatggggtgtgcacgcctttaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr11_88931799_88932093
seq2: B6Ng01-104D15.b_172_471 (reverse)

seq1  CCTGGAACTCACTCTGTAGACCAGGCTGGCTTCGAACTCAGAGATCT-GA  49
      |||||||||| || | |||||||||||||| || ||||      ||| ||
seq2  CCTGGAACTCTCTATATAGACCAGGCTGGCCTCCAACT------TCTAGA  44

seq1  GATCCACCTGCCTCTGCCT-CTGAGCGCTGGGATCAAAAGTGTACCCCAT  98
      ||||  ||  ||| ||||| ||||| ||||| || ||||   | | ||| 
seq2  GATCTGCCCTCCT-TGCCTACTGAGTGCTGGAATTAAAATCATGCTCCA-  92

seq1  CACTAGCCAGCCACCTATTTTTTATAGGA--------CAGAAGTT--TCT  138
      || |  |||||    | || ||| |   |         ||||| |    |
seq2  CAATGCCCAGCTTGATTTTCTTTCTTTAAATTCTTTTAAGAAGCTGGCTT  142

seq1  GAGCCAG-GCATGGTGGCACACGCCTTTAATCCCAGCACTCGGGAGGCAG  187
       | || | || ||||||| || ||||||||||||||||||||||||||||
seq2  CACCCGGTGCGTGGTGGCGCATGCCTTTAATCCCAGCACTCGGGAGGCAG  192

seq1  AGGCAGGTGGATCTCTGAGTTTGAGGCCAGCCTGGTCTACAAAGTGAGTT  237
      |||||||  ||| |||||||| ||||||||||||||||||||||||||||
seq2  AGGCAGGCAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTT  242

seq1  CCAGGACAGCCAGGGCTATACAGAGAAACCCTGTCTCAAAAAAACAAAAA  287
      |||||||||| |||||||||||||||||||||||||| ||||||||||||
seq2  CCAGGACAGCTAGGGCTATACAGAGAAACCCTGTCTCGAAAAAACAAAAA  292

seq1  AAACAAAA  295
      ||| ||||
seq2  AAAAAAAA  300

seq1: chr16_17052885_17053928
seq2: B6Ng01-104D15.g_70_1116

seq1  GAATTCAGTCCTTGGAGCCCGGAAGGAGGAAGGAGAGAGCCAACTCCTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTCCTTGGAGCCCGGAAGGAGGAAGGAGAGAGCCAACTCCTTC  50

seq1  AAGTTGTCCCTGGACCAGAGGATCTGAGGAGAGAACTGGAGCATCAGGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTCCCTGGACCAGAGGATCTGAGGAGAGAACTGGAGCATCAGGTT  100

seq1  TCCAACCACAGATCCATCTTTGCTGGCCTGATTTTGTGGGTTTTGTTTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAACCACAGATCCATCTTTGCTGGCCTGATTTTGTGGGTTTTGTTTAT  150

seq1  TTTCTGATTTCACACAAACTACCACAGATGACAGTGCAGAGAGCTAATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGATTTCACACAAACTACCACAGATGACAGTGCAGAGAGCTAATTG  200

seq1  GTCTCTTGGAGCTGGAGACTGAGTTAAGATTCAAAAGTACAGGGGCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTGGAGCTGGAGACTGAGTTAAGATTCAAAAGTACAGGGGCTAGA  250

seq1  GAGATGCCTTCATGGTTAAGAGCAGTGGCTGCTCTTCCAGAGGTCCTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGCCTTCATGGTTAAGAGCAGTGGCTGCTCTTCCAGAGGTCCTGAG  300

seq1  TTCAATTCCCAACAACCACATGGTGGGTCACAACCATCTGTAATGGGAGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATTCCCAACAACCACATGGTGGGTCACAACCATCTGTAATGGGAGC  350

seq1  AGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTGCTCATACAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCCCTCTTCTGGTGTGTCTGAAGACAGTGACAGTGTGCTCATACAT  400

seq1  AAAATAAATCTTCTTTTTAAGAAAAAGATTAAAAACTACAACTTGCCTCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAAATCTTCTTTTTAAGAAAAAGATTAAAAACTACAACTTGCCTCA  450

seq1  TTTCCAGCTTAACAACCAAAGAAGAACATTATGATGCACTTAAGTGAGCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAGCTTAACAACCAAAGAAGAACATTATGATGCACTTAAGTGAGCA  500

seq1  GAGCCTACCGATCACCTGTCAGGGAAATAACAACTGAGAAGATGAGGTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCCTACCGATCACCTGTCAGGGAAATAACAACTGAGAAGATGAGGTCA  550

seq1  CTTTCATTGAATAATCCTATTTTGTCATTAGTTTTGCTTTTAGTAATTGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCATTGAATAATCCTATTTTGTCATTAGTTTTGCTTTTAGTAATTGG  600

seq1  AACGGTAAAACAAGTGCTATACAGCTGTAAAGTAGTTATGTGCCCAGGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGGTAAAACAAGTGCTATACAGCTGTAAAGTAGTTATGTGCCCAGGCA  650

seq1  GTGGTGGCGCACGCCTTTAATTCCAGCACTCAGGAGGCAGAAGCAGGCAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGGCGCACGCCTTTAATTCCAGCACTCAGGAGGCAGAAGCAGGCAG  700

seq1  ATCTC-TTGTTACTTTGAGGCCAACCTAGTCTACAAAGTGAGATCTAGGA  749
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTGTTACTTTGAGGCCAACCTAGTCTACAAAGTGAGATCTAGGA  750

seq1  CAGCCAGGGCTACATACCTTGGACTAGAGAGA-GGGCTCAGCCGTTAAAG  798
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  CAGCCAGGGCTACATACCTTGGACTAGAGAGAGGGGCTCAGCCGTTAAAG  800

seq1  GTTGGGCTCACAACCATAAATATAAGAGAAACCTTGTCTTGGAAAACCAA  848
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GTTGGGCTCACAACCATAAATATAAGAGAAACCTTGTCTTGGAAAACC-A  849

seq1  AAGCCTCGTAGCGGTGGTGTGTGCCTTGGCACTGTTGGTGGCACTGCAAG  898
      ||||||||||||||||||||||||||| |||||||| |||||||||||||
seq2  AAGCCTCGTAGCGGTGGTGTGTGCCTT-GCACTGTTTGTGGCACTGCAAG  898

seq1  TAAATGCAGTGTATCTGGC-TGGCTGCTGTATTTGGCC-CAGAAAGAATT  946
      |||||||||| |||||||| |||||||||||||||||| ||||||| |||
seq2  TAAATGCAGT-TATCTGGCTTGGCTGCTGTATTTGGCCTCAGAAAG-ATT  946

seq1  GAGTTTTAACTCAA-GACAGT-GATTTATTAC-TAGGATATTCCTTGATG  993
      ||| |||||||||| |||||| |||||||||| | ||||||| |||||||
seq2  GAG-TTTAACTCAAGGACAGTGGATTTATTACTTGGGATATT-CTTGATG  994

seq1  ATAATGAAAAAGAG-TAGTAGTAGCCA-GGCATGGTG-GTGCACGCCTTT  1040
      || ||||||||||| |  ||||||||| ||||||| | ||||||||||||
seq2  AT-ATGAAAAAGAGCTGTTAGTAGCCATGGCATGGGGTGTGCACGCCTTT  1043

seq1  AATC  1044
      ||||
seq2  AATC  1047