BAC Information

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BAC

Clone NameB6Ng01-104J01
Chromosome16 (Build37)
Map Location 97,696,272 - 97,864,196
singlet/doubletdoublet
Overlap geneORF9, EG668559, LOC100041436, Mx2, Tmprss2
Upstream genePcp4, Dscam, Bace2, Mx1
Downstream geneRipk4, Prdm15, 5830404H04Rik, Zfp295, LOC100041502, A630089N07Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-104J01.bB6Ng01-104J01.g
ACCDH912826DH912827
length786420
definitionDH912826|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J01, 5' end.DH912827|Mus musculus domesticus DNA, BAC clone: B6Ng01-104J01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,696,272 - 97,697,053)(97,863,771 - 97,864,196)
sequence
aagtagaaagatggccccatcagaattatggccttggctttgcagccaat
ctctttctctttagacctatgtatgttggtcaaaagggttgggtaatagt
ctccaaaggcatggacctcacatagtcatgtaacaccacccatcagctgg
gatgctcacaggagacatggtgataagtcaaatttcactcacttcccttt
gatctttgataagcggaggcatcaagtcactgtgactcctccaagaatgg
caatcagccaaagcagctctgtccagttcatatttggtacttaccatatt
ggaagtggttcatagagaaccacttcaggcagtcccctctctgtgtgatt
gctacccccagacgaggaattaaagaaggctagcctcctgcccaaacaga
atagtcaccaccagtgactggaaccactccgaggatcccatttgcagtct
gtagtgagactaaaaaagtctgggatggaacatggacctaatggaagagg
ctgaccagtgctctgtgtgggtgactacctacagaacctttacacaccat
ggccccatctgaggattaagaaaagtcactcactttttctctctcgattt
ctgaagggagctcaaagccctttgctgcaacaaacacccagcttgatctg
aactttcatgttcttgatttctttgcttccaagggctttctatggcatcc
tttgcttgagccttcagtctggggcaaaggagaaagcatgagaaaggcct
cctgtggaaatgtggggtgtgtgcgtgagtgtgtgc
ttcctggcagacaagttcttctctttttcttctcccagtactacactggg
gaaatctcaattccttagggtcccatcacaacattcttagaatagaaatg
aggggaactagggtctttgtgtgaaatgtctttacttctgccaggatcag
cctaggtgatggccatgctagagaacactgggccacttgtgcagagcagg
gtgggctccttcacaagggctattgctgaaacaataggctaggttgtcac
tcacctacctgctggtgacctagagagacagagggttctgaaacaatatc
ttgatgaacagaggtttatgggacacctcttttattcttttgagcaggtg
tttactttgttataatttgtattttttaaaggtgtgtgtgtgtatgtgtg
tgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_97696272_97697053
seq2: B6Ng01-104J01.b_53_838

seq1  AAGTAGAAAGATGGCCTCATCAGAATTATGGCCTTGGCTTTGCAGCCAAT  50
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AAGTAGAAAGATGGCCCCATCAGAATTATGGCCTTGGCTTTGCAGCCAAT  50

seq1  CTCTTTCTCTTTAGACCTATGTATGTTGGTCAAAAGGGTTGGGTAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTCTCTTTAGACCTATGTATGTTGGTCAAAAGGGTTGGGTAATAGT  100

seq1  CTCCAAAGGCATGGACCTCACATAGTCATGTAACACCACCCATCAGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAAGGCATGGACCTCACATAGTCATGTAACACCACCCATCAGCTGG  150

seq1  GATGCTCACAGGAGACATGGTGATAAGTCAAATTTCACTCACTTCCCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCACAGGAGACATGGTGATAAGTCAAATTTCACTCACTTCCCTTT  200

seq1  GATCTTTGATAAGCGGAGGCATCAAGTCACTGTGACTCCTCCAAGAATGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTTGATAAGCGGAGGCATCAAGTCACTGTGACTCCTCCAAGAATGG  250

seq1  CAATCAGCCAAAGCAGCTCTGTCCAGTTCATATTTGGTACTTACCATATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCAGCCAAAGCAGCTCTGTCCAGTTCATATTTGGTACTTACCATATT  300

seq1  GGAAGTGGTTCATAGAGAACCACTTCAGGCAGTCCCCTCTCTGTGTGATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTGGTTCATAGAGAACCACTTCAGGCAGTCCCCTCTCTGTGTGATT  350

seq1  GCTACCCCCAGACGAGGAACTAAAGAAGGCTAGCCTCCTGCCCAAACAGA  400
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GCTACCCCCAGACGAGGAATTAAAGAAGGCTAGCCTCCTGCCCAAACAGA  400

seq1  ATAGTCACCACCAGTGACTGGAACCACTCCGAGGATCCCATTTGCAGTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCACCACCAGTGACTGGAACCACTCCGAGGATCCCATTTGCAGTCT  450

seq1  GTAGTGAGACTAAAAAAGTCTGGGATGGAACATGGACCTAATGGAAGAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGTGAGACTAAAAAAGTCTGGGATGGAACATGGACCTAATGGAAGAGG  500

seq1  CTGACCAGTGCTCTGTGTGGGTGACTACCTACAGAACCTTTACACACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCAGTGCTCTGTGTGGGTGACTACCTACAGAACCTTTACACACCAT  550

seq1  GGCCCCATCTGAGGATTAAGAAAAGTCACTCACTTTTTCTCTCTCGATTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCCATCTGAGGATTAAGAAAAGTCACTCACTTTTTCTCTCTCGATTT  600

seq1  CTGAAGGGAGCTCAAAGCCCTTTGCTGCAACAAACACCCAGCTTGATCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGGGAGCTCAAAGCCCTTTGCTGCAACAAACACCCAGCTTGATCTG  650

seq1  AAC-TTCATGTTCTTGATTTCTTTGCTTCCAAGGGC-TTCTATGGCATCC  698
      ||| |||||||||||||||||||||||||||||||| |||||||||||||
seq2  AACTTTCATGTTCTTGATTTCTTTGCTTCCAAGGGCTTTCTATGGCATCC  700

seq1  TTTGCTTGAGCCTTCAGTCT-GGGCAAAGGAGAAAGCATGAG-AAGGCCT  746
      |||||||||||||||||||| ||||||||||||||||||||| |||||||
seq2  TTTGCTTGAGCCTTCAGTCTGGGGCAAAGGAGAAAGCATGAGAAAGGCCT  750

seq1  CCTGTGGAAATGTGGGGTGTGTGCGTGAGTGTGTGC  782
      ||||||||||||||||||||||||||||||||||||
seq2  CCTGTGGAAATGTGGGGTGTGTGCGTGAGTGTGTGC  786

seq1: chr16_97863771_97864196
seq2: B6Ng01-104J01.g_69_494 (reverse)

seq1  CACACACACACACACACACACACACATACACACACACACCTTTAAAAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACATACACACACACACCTTTAAAAAAT  50

seq1  ACAAATTATAACAAAGTAAACACCTGCTCAAAAGAATAAAAGAGGTGTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATTATAACAAAGTAAACACCTGCTCAAAAGAATAAAAGAGGTGTCC  100

seq1  CATAAACCTCTGTTCATCAAGATATTGTTTCAGAACCCTCTGTCTCTCTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAACCTCTGTTCATCAAGATATTGTTTCAGAACCCTCTGTCTCTCTA  150

seq1  GGTCACCAGCAGGTAGGTGAGTGACAACCTAGCCTATTGTTTCAGCAATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCAGCAGGTAGGTGAGTGACAACCTAGCCTATTGTTTCAGCAATA  200

seq1  GCCCTTGTGAAGGAGCCCACCCTGCTCTGCACAAGTGGCCCAGTGTTCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTGTGAAGGAGCCCACCCTGCTCTGCACAAGTGGCCCAGTGTTCTC  250

seq1  TAGCATGGCCATCACCTAGGCTGATCCTGGCAGAAGTAAAGACATTTCAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATGGCCATCACCTAGGCTGATCCTGGCAGAAGTAAAGACATTTCAC  300

seq1  ACAAAGACCCTAGTTCCCCTCATTTCTATTCTAAGAATGTTGTGATGGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAGACCCTAGTTCCCCTCATTTCTATTCTAAGAATGTTGTGATGGGA  350

seq1  CCCTAAGGAATTGAGATTTCCCCAGTGTAGTACTGGGAGAAGAAAAAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTAAGGAATTGAGATTTCCCCAGTGTAGTACTGGGAGAAGAAAAAGAG  400

seq1  AAGAACTTGTCTGCCAGGAAGAATTC  426
      ||||||||||||||||||||||||||
seq2  AAGAACTTGTCTGCCAGGAAGAATTC  426