BAC Information

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BAC

Clone NameB6Ng01-105A14
Chromosome16 (Build37)
Map Location 72,983,842 - 72,985,000
singlet/doubletsinglet
Overlap geneRobo1
Upstream genenone
Downstream geneLOC100039310, LOC100039318, LOC100039326, Robo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105A14.bB6Ng01-105A14.g
ACCDH913166DH913167
length1,1641,137
definitionDH913166|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A14, 5' end.DH913167|Mus musculus domesticus DNA, BAC clone: B6Ng01-105A14, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatgaaaaggacagagacaagcttcaccaacagaatgcaagag
atggaaaaaaagaacttaaggaattgaagatacagtttaaaagtggatat
atgggtcaaagaaaatgtaatacctaaaaattttctgacatcaaaaaata
tatctacgaaatctgggacactatgaaaagactgaatctatacatactag
aaatcaaagaaagagatatgctcaaaggcatagaacatattttgaacaaa
atcatagaagaaaatcatagaggaaaaatgtcctcacctaaggaggagat
gactataaaagggcacaagaagccaccattatacagggtgctaggaggaa
aactccaacctatggaggttaactgcaaccatgtaaacacagggaataaa
taatctcagaccgccaaaatcaaaggaagcagcacatgtgtgtgtgtgtg
tgtgcatgcatgtgtgtgcatatacacacacacatactcactaccaacga
caacaaaaacaaaaaaacaggaatcaataatcagtggtcattgatatctc
tcaatatcaatggtaccaataaaaagatccagacttatagaatgcattca
aaaatatgacccatctgtttgctacattccagacatactcctcaacatca
aaaataaacattacctcaaaatgaaaaggttgcaaaaagatattacagtc
aaacagacctaagaaaccaactggtgtagccatcttaatatccaacaaaa
tagaattcaaccaatactaatcagataaaaataaggaaagacatcatgtt
cttatctaaggaaagccaccaagatgacattttcatttcttaacatttat
gccccaaacacaaggggcattccccaaaagaaaccctagtacagctaaaa
tcacatagaaattctcacactctgacactgcggaagactgcaatactgat
atgcaatgtgaaagggcagctcatcaaaataaactagagaaggaagatct
cctgattgatgtacaaacaagggccctatgaatttactgaacagttatca
acccaaagaaatataccttcttctcagtacatttggtacatcttccagat
tgactggacaaagcaggtctcaagagatcagaaatctagaataactcctt
tctctatcgactgc
gaattctcgatagatccgaatcctgtgtaagtctgaaactcaactttgat
ctatgttgagctttgcaaataacttggctacgttatcagcttggcttttt
aattcttcctaggtttggtgtctcggtaatgaaacgaagtatcacataaa
caagacagtcgatggctcgaccttctcggtggtcatcccctctctggttc
ctgggatccgatacagtgtggaggtggcagcgagcactggggcgggtccc
ggggtgaagagcgaacctcagttcatccagttaggtaagcgtcacgtgat
ttgtcatttccccacttggtctgctctgctgttttcgttttgcatgcttt
tattctgagttgcccagttattgctgtgggtccagtagaatctgcagtat
gatgtgtgcaacggggcaatctttatttaaaataaagagaactataggaa
tacggctgtgaatcacttcccaagggcaatctgttctgagaaatatattg
ttaggtgctttttgtcattgtgtggtcttcacggagtgcaattacgtaaa
ctaacacatctatgacatcactcgacagtgccatcctatgggaagattgc
tctgcacagggtcatcattgaccaaggtgtaggttgatggtgtatggcta
atgactatagatgactcacaactaaaacatcaaagtgtacattattgcta
cttcaaatacaccacgatcaatatttactgtcaccctaactctgtctttt
ggaatgttaacctaattaacaaatgctaataattgagcatcaaggaaaca
tctatgaaaaagaagacacaggctttctaccattgcatttagaattattt
tgggaaggaatcaagcccttctttggagcacgtagccaggtattggaatt
tacagcatgtgaattctctatttcatttaactctatttaaaattatactg
gtgtttatgacagagtaaattcagatcttcatttgaatattattactaat
aacttgaaaggtaaatcaaatgttgtcctaggagaatttacctcaatgaa
agaaaatggtggccagaagcctctctgatgtcattcctcacgaatattgt
tattgcacacattaaatattaaggtgattaatgagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_72983842_72985000
seq2: B6Ng01-105A14.g_69_1205

seq1  GAATTCTCGATAGATCCGAATCCTGTGTAAGTCTGAAACTCAACTTTGAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCGATAGATCCGAATCCTGTGTAAGTCTGAAACTCAACTTTGAT  50

seq1  CTATGTTGAGCTTTGCAAATAACTTGGCTACGTTATCAGCTTGGCTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGTTGAGCTTTGCAAATAACTTGGCTACGTTATCAGCTTGGCTTTTT  100

seq1  AATTCTTCCTAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTCCTAGGTTTGGTGTCTCGGTAATGAAACGAAGTATCACATAAA  150

seq1  CAAGACAGTCGATGGCTCGACCTTCTCGGTGGTCATCCCCTCTCTGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGACAGTCGATGGCTCGACCTTCTCGGTGGTCATCCCCTCTCTGGTTC  200

seq1  CTGGGATCCGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCGGGTCCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATCCGATACAGTGTGGAGGTGGCAGCGAGCACTGGGGCGGGTCCC  250

seq1  GGGGTGAAGAGCGAACCTCAGTTCATCCAGTTAGGTAAGCGTCACGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTGAAGAGCGAACCTCAGTTCATCCAGTTAGGTAAGCGTCACGTGAT  300

seq1  TTGTCATTTCCCCACTTGGTCTGCTCTGCTGTTTTCGTTTTGCATGCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCATTTCCCCACTTGGTCTGCTCTGCTGTTTTCGTTTTGCATGCTTT  350

seq1  TATTCTGAGTTGCCCAGTTATTGCTGTGGGTCCAGTAGAATCTGCAGTAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGAGTTGCCCAGTTATTGCTGTGGGTCCAGTAGAATCTGCAGTAT  400

seq1  GATGTGTGCAACGGGGCAATCTTTATTTAAAATAAAGAGAACTATAGGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTGTGCAACGGGGCAATCTTTATTTAAAATAAAGAGAACTATAGGAA  450

seq1  TACGGCTGTGAATCACTTCCCAAGGGCAATCTGTTCTGAGAAATATATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGGCTGTGAATCACTTCCCAAGGGCAATCTGTTCTGAGAAATATATTG  500

seq1  TTAGGTGCTTTTTGTCATTGTGTGGTCTTCACGGAGTGCAATTACGTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTGCTTTTTGTCATTGTGTGGTCTTCACGGAGTGCAATTACGTAAA  550

seq1  CTAACACATCTATGACATCACTCGACAGTGCCATCCTATGGGAAGATTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACATCTATGACATCACTCGACAGTGCCATCCTATGGGAAGATTGC  600

seq1  TCTGCACAGGGTCATCATTGACCAAGGTGTAGGTTGATGGTGTATGGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCACAGGGTCATCATTGACCAAGGTGTAGGTTGATGGTGTATGGCTA  650

seq1  ATGACTATAGATGACTCACAACTAAAACATCAAAGTGTACATTATTGCTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACTATAGATGACTCACAACTAAAACATCAAAGTGTACATTATTGCTA  700

seq1  CTTCAAATACACCACGATCAATATTTACTGTCACCCTAACTCTGTCTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAATACACCACGATCAATATTTACTGTCACCCTAACTCTGTCTTTT  750

seq1  GGAATGTTAACCTAATTAACAAATGCTAATAATTGAGCATCAAGGAAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGTTAACCTAATTAACAAATGCTAATAATTGAGCATCAAGGAAACA  800

seq1  TCTATGAAAAAGAAAGACACAGGCTTTCTACCATTGCATTTTAGAATTAT  850
      |||||||||||| ||||||||||||||||||||||||| |||||||||||
seq2  TCTATGAAAAAG-AAGACACAGGCTTTCTACCATTGCA-TTTAGAATTAT  848

seq1  TTTGGGAAGGAATCAAAGCCCTTCTTTGGAGCACGTAAGCCAGGTATTGG  900
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  TTTGGGAAGGAATC-AAGCCCTTCTTTGGAGCACGT-AGCCAGGTATTGG  896

seq1  AAATTTACAGCAATGTGAAATCTCTATTTACATTTAAACTCTATTTAAAA  950
       |||||||||| ||||||| ||||||||| ||||| ||||||||||||||
seq2  -AATTTACAGC-ATGTGAATTCTCTATTT-CATTT-AACTCTATTTAAAA  942

seq1  TTATAACTGGTGTTTATGACAAGAGGTAAATTCAGATCTTCATTTGAAAT  1000
      |||| ||||||||||||||| ||| ||||||||||||||||||||| |||
seq2  TTAT-ACTGGTGTTTATGAC-AGA-GTAAATTCAGATCTTCATTTG-AAT  988

seq1  ATTTATATACTAATAACTTAGAAGGTTAAATACAATGTTGTCCTAAGGAG  1050
      | |||| |||||||||||| ||| | |||||  ||||||||||| |||||
seq2  A-TTAT-TACTAATAACTT-GAAAGGTAAATCAAATGTTGTCCT-AGGAG  1034

seq1  AA-TTAGCTCAATGAAAAGGAAACTGTGGCACAGAAGCCTTCCTGACTGT  1099
      || ||| ||||||| |||| |||  ||||| |||||||||  |||| |||
seq2  AATTTACCTCAATG-AAAGAAAATGGTGGC-CAGAAGCCTCTCTGA-TGT  1081

seq1  CATTCCCTACAGAATATAGTTTATATGCAGACTATATAAATTTAAAGGTG  1149
      ||||||  || |||||| | |||| |||| || || ||||| | ||||||
seq2  CATTCCTCAC-GAATATTG-TTAT-TGCACAC-AT-TAAATATTAAGGTG  1126

seq1  ATTAAT-AGTA  1159
      |||||| ||||
seq2  ATTAATGAGTA  1137