BAC Information

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BAC

Clone NameB6Ng01-105B11
Chromosome16 (Build37)
Map Location 88,622,817 - 88,814,060
singlet/doubletdoublet
Overlap gene2310079G19Rik, 2310002B14Rik, EG665513, 2310061N02Rik, Krtap13-1, Krtap13, 2310034C09Rik, 2310057N15Rik, EG546672, EG433047
Upstream geneBach1, LOC100039901, Grik1, EG622373, Cldn17, Cldn8, Gm312
Downstream gene4930553J12Rik, Krtap14, Krtap15, Krtap16-9, Krtap16-1, Krtap16-5, Krtap16-4, Krtap8-2, LOC100040191, AY026312, Krtap16-10, EG621595, LOC100040167, 1110032D16Rik, LOC100040201, Krtap6-1, LOC100040214, Krtap16-8, 1110025L11Rik, LOC100040249, LOC100040267, EG622794, LOC100040281, ENSMUSG00000044227, EG665661, LOC100040288, EG622935, EG622981, EG622998, EG623011, EG623026, LOC100040346, EG623049, LOC100040415, EG640636, LOC640652, LOC640654, LOC100040425, LOC100040374, LOC640656, LOC100040445, LOC100040456, Krtap21-1, Krtap6-2, 5430433J05Rik, Tiam1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105B11.bB6Ng01-105B11.g
ACCDH913204DH913205
length1,1581,075
definitionDH913204|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B11, 5' end.DH913205|Mus musculus domesticus DNA, BAC clone: B6Ng01-105B11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,812,904 - 88,814,060)(88,622,817 - 88,623,880)
sequence
gaattccttatttatgaaattgccaaagtcatcagcttttggctctagaa
cagtaggagatagcatgccagaagccattcgcttctgagaaaagattact
aaaactaaatccttttgaaaagccaaatacaaaccatctaccatagaagc
tacacacacacacacacacacacacacgcacacgcacacgcacacgcaca
tgcacatgtatatttccatataacagagataatccccctcctggacaaca
catgcaagccccttgctaggaatacctcacctttctcagagttggtgagt
gaggccccttggagccccaaacattaaggtaaattggcattgtttttggt
taaccccaagaatttgatgagaggatattgctgaagatagcacatacttg
agtcaaagaacatggaaaaatcatgtttctgacatggaagcttaatctct
actgacttgttttcaaagctctggaaggtggcatctatgatatactctaa
ctataggttttattttcaaaaatggtaccagcaagacttgataggtttag
tcatccttctctagattcttctacaatagaaggttcagaagaaagataaa
aggcctgaacacttatccagactcaatgtgattacagtagagcagaagga
gaagcattgattaaatttgggccatcacagtcccctaggagttccttagg
ctcagtcctctccggaagcagcctatgaatattgaggtgtccgcagaaag
tgatagtgtcagctaaatctccgtttgcttaaaatgttagaaaagtaatg
tccatgcttcagcaaagatgagaatccagggccacattaagcattcatgt
cagatgcactgggatttaaaaatttgtttccttccttcatctctcaagga
tttactgtcttaactccatagaatggtccaaagtctggctcttgggaagc
tacaatttctccttctcctagtctttcttactcttctagggccactgtta
taaatctttcttttttcacctgtttttcttttgtcttctcttctaccctc
ttctattatcctttagtactgaaggagaaaatagtgggtaatgctgagcc
acaaaaattggaatgttgaaaaacaattataaggtacaaaatagggttaa
atcgtcag
gaattcatgaccagaaagagacagtgaaagggggacccaagagctccagg
acctcttcaagtagatcctctcagggacttgcagacctccccaaggcttc
aatagtcaccaatcccccattcaaaagaaatccttacatgtattctgatt
ttctccacattgttcccaacgtatttatttaaaatctcattggttttgtt
attttcctatactctaggaatagaacaaacaggctcacgagaactgttga
tataacaggatcccacatagcctcgtggtcaaacatgtaataatttcagt
aaatgcagcagagaataatgccagcccaggaatctgaaggctcccgttta
tccagttttctttccttctgtgttttctttcttctgtaaaaacttgctca
ctagttgttgtacttagacacatccttaaagcctactcataaaattactg
catagagacagtacgcagtgtgcagctgttaccaacatcttttattgtca
tttctttgagcaatctagaccatctacatagtatgttaaatactcaataa
ataaagtgaacttttaacaactgattttattttaaattccagacttccta
cttgctatttttctgtattggttttgtctttttaaattattttgtttctt
ttgtttttttgatagaaggactgacctttgaacttaacaaagcaatcaat
tgacagcccttgactctggactttcttattcccacttctctgatgtttgg
aaccacagggcatgcaccaacatactcaggtttattttatgacccccttt
aaactccctatccaaaacacaaattctttggttttacttatcagacatac
aaacccctattttcaccctgtctttgacgagttgaaaattatttagctag
tttctccagcttgaaatcatgtttgatattgactcattttgtttcttttg
gtggttcttaataatatgcaaacattaacagcggcggagcctgtctaagc
tgccttctatcccccatcaggttccttggatgaatttaacattcctcagt
cgggcactacaccagcctacttaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_88812904_88814060
seq2: B6Ng01-105B11.b_45_1202 (reverse)

seq1  CTGACGA-TTAACCCTATTGTCACCTTTATAAATTGTTTTTCAAACATCC  49
      ||||||| ||||||||||| |   | |||| |||||||||||||   |||
seq2  CTGACGATTTAACCCTATTTTGTACCTTAT-AATTGTTTTTCAACATTCC  49

seq1  AATATTTGTTGCTCAGCATTACCCACTTGTTTCTCCTCCAGTAACTAAAG  99
      ||| ||||| |||||||||||||||||  |||||||| |||| |||||||
seq2  AATTTTTGTGGCTCAGCATTACCCACTATTTTCTCCTTCAGT-ACTAAAG  98

seq1  GATAATAAGAAGAGGGTAGAAGAGAAGACAAAAGAAAAACAGTGAAAAAA  149
      |||||| |||||||||||||||||||||||||||||||||||   |||||
seq2  GATAAT-AGAAGAGGGTAGAAGAGAAGACAAAAGAAAAACAGGTGAAAAA  147

seq1  AGAAAGATTTAATAACAGTGGCCCTAGGAAGAGTAAGGAAGACTAGGAG-  198
      |||||||||| ||||||||||||||| |||||||||| ||||||||||| 
seq2  AGAAAGATTT-ATAACAGTGGCCCTA-GAAGAGTAAGAAAGACTAGGAGA  195

seq1  AGGAGAAATTGTAGCTTCCCAAGAGCCAGACTTTGGACCATTCTAATGGA  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGGAGAAATTGTAGCTTCCCAAGAGCCAGACTTTGGACCATTCT-ATGGA  244

seq1  GTTAAGACAGTAAATTCCTGAGAGATGAAAGAAGGAAACAAATTTTTAAA  298
      ||||||||||||||| | ||||||||||| ||||||||||||||||||||
seq2  GTTAAGACAGTAAATCCTTGAGAGATGAAGGAAGGAAACAAATTTTTAAA  294

seq1  T-CCAGTGCATCTGACATG-ATGCTTAATGTGGCCCTGGATTCTCATCTT  346
      | ||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TCCCAGTGCATCTGACATGAATGCTTAATGTGGCCCTGGATTCTCATCTT  344

seq1  TGCTG-AGCATGGACATTACTTTTCTAACATTTTAAGC-AACGGAGATTT  394
      ||||| |||||||||||||||||||||||||||||||| |||||||||||
seq2  TGCTGAAGCATGGACATTACTTTTCTAACATTTTAAGCAAACGGAGATTT  394

seq1  AGCTGACACTATCACTTTCTGCGGACACCTCAATATTCATAGGCTGCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGACACTATCACTTTCTGCGGACACCTCAATATTCATAGGCTGCTTC  444

seq1  CGGAGAGGACTGAGCCTAAGGAACTCCTAGGGGACTGTGATGG-CCAAAT  493
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGGAGAGGACTGAGCCTAAGGAACTCCTAGGGGACTGTGATGGCCCAAAT  494

seq1  TTAATCAATGCTTCTCCTTCTGCTCTACTGTAATCACATTGAGTCTGGAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATCAATGCTTCTCCTTCTGCTCTACTGTAATCACATTGAGTCTGGAT  544

seq1  AAGTGTTCAGGCCTTTTATCTTTCTTCTGAACCTTCTATTGTAGAAGAAT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGTTCAGGCCTTTTATCTTTCTTCTGAACCTTCTATTGTAGAAGAAT  594

seq1  CTAGAGAAGGATGACTAAACCTATCAAGTCTTGCTGGTACCATTTTTGAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGAAGGATGACTAAACCTATCAAGTCTTGCTGGTACCATTTTTGAA  644

seq1  AATAAAACCTATAGTTAGAGTATATCATAGATGCCACCTTCCAGAGCTTT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAACCTATAGTTAGAGTATATCATAGATGCCACCTTCCAGAGCTTT  694

seq1  GAAAACAAGTCAGTAGAGATTAAGCTTCCATGTCAGAAACATGATTTTTC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACAAGTCAGTAGAGATTAAGCTTCCATGTCAGAAACATGATTTTTC  744

seq1  CATGTTCTTTGACTCAAGTATGTGCTATCTTCAGCAATATCCTCTCATCA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTCTTTGACTCAAGTATGTGCTATCTTCAGCAATATCCTCTCATCA  794

seq1  AATTCTTGGGGTTAACCAAAAACAATGCCAATTTACCTTAATGTTTGGGG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTTGGGGTTAACCAAAAACAATGCCAATTTACCTTAATGTTTGGGG  844

seq1  CTCCAAGGGGCCTCACTCACCAACTCTGAGAAAGGTGAGGTATTCCTAGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCAAGGGGCCTCACTCACCAACTCTGAGAAAGGTGAGGTATTCCTAGC  894

seq1  AAGGGGCTTGCATGTGTTGTCCAGGAGGGGGATTATCTCTGTTATATGGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGCTTGCATGTGTTGTCCAGGAGGGGGATTATCTCTGTTATATGGA  944

seq1  AATATACATGTGCATGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATACATGTGCATGTGCGTGTGCGTGTGCGTGTGCGTGTGTGTGTGTG  994

seq1  TGTGTGTGTGTGTAGCTTCTATGGTAGATGGTTTGTATTTGGCTTTTCAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTAGCTTCTATGGTAGATGGTTTGTATTTGGCTTTTCAA  1044

seq1  AAGGATTTAGTTTTAGTAATCTTTTCTCAGAAGCGAATGGCTTCTGGCAT  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGATTTAGTTTTAGTAATCTTTTCTCAGAAGCGAATGGCTTCTGGCAT  1094

seq1  GCTATCTCCTACTGTTCTAGAGCCAAAAGCTGATGACTTTGGCAATTTCA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCTCCTACTGTTCTAGAGCCAAAAGCTGATGACTTTGGCAATTTCA  1144

seq1  TAAATAAGGAATTC  1157
      ||||||||||||||
seq2  TAAATAAGGAATTC  1158

seq1: chr16_88622817_88623880
seq2: B6Ng01-105B11.g_66_1140

seq1  GAATTCATGACCAGAAAGAGACAGTGAAAGGGGGACCCAAGAGCTCCAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGACCAGAAAGAGACAGTGAAAGGGGGACCCAAGAGCTCCAGG  50

seq1  ACCTCTTCAAGTAGATCCTCTCAGGGACTTGCAGACCTCCCCAAGGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCAAGTAGATCCTCTCAGGGACTTGCAGACCTCCCCAAGGCTTC  100

seq1  AATAGTCACCAATCCCCCATTCAAAAGAAATCCTTACATGTATTCTGATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTCACCAATCCCCCATTCAAAAGAAATCCTTACATGTATTCTGATT  150

seq1  TTCTCCACATTGTTCCCAACGTATTTATTTAAAATCTCATTGGTTTTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCACATTGTTCCCAACGTATTTATTTAAAATCTCATTGGTTTTGTT  200

seq1  ATTTTCCTATACTCTAGGAATAGAACAAACAGGCTCACGAGAACTGTTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTATACTCTAGGAATAGAACAAACAGGCTCACGAGAACTGTTGA  250

seq1  TATAACAGGATCCCACATAGCCTCGTGGTCAAACATGTAATAATTTCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACAGGATCCCACATAGCCTCGTGGTCAAACATGTAATAATTTCAGT  300

seq1  AAATGCAGCAGAGAATAATGCCAGCCCAGGAATCTGAAGGCTCCCGTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAGCAGAGAATAATGCCAGCCCAGGAATCTGAAGGCTCCCGTTTA  350

seq1  TCCAGTTTTCTTTCCTTCTGTGTTTTCTTTCTTCTGTAAAAACTTGCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTTTTCTTTCCTTCTGTGTTTTCTTTCTTCTGTAAAAACTTGCTCA  400

seq1  CTAGTTGTTGTACTTAGACACATCCTTAAAGCCTACTCATAAAATTACTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTTGTTGTACTTAGACACATCCTTAAAGCCTACTCATAAAATTACTG  450

seq1  CATAGAGACAGTACGCAGTGTGCAGCTGTTACCAACATCTTTTATTGTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGAGACAGTACGCAGTGTGCAGCTGTTACCAACATCTTTTATTGTCA  500

seq1  TTTCTTTGAGCAATCTAGACCATCTACATAGTATGTTAAATACTCAATAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGAGCAATCTAGACCATCTACATAGTATGTTAAATACTCAATAA  550

seq1  ATAAAGTGAACTTTTAACAACTGATTTTATTTTAAATTCCAGACTTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGTGAACTTTTAACAACTGATTTTATTTTAAATTCCAGACTTCCTA  600

seq1  CTTGCTATTTTTCTGTATTGGTTTTGTC-TTTTAAATTA-TTTGTTTC-T  647
      |||||||||||||||||||||||||||| |||||||||| |||||||| |
seq2  CTTGCTATTTTTCTGTATTGGTTTTGTCTTTTTAAATTATTTTGTTTCTT  650

seq1  TTGTTTTTTTGATAGAAGGACTGACC-TTGAACTTAACAAAGCAATCAA-  695
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  TTGTTTTTTTGATAGAAGGACTGACCTTTGAACTTAACAAAGCAATCAAT  700

seq1  TGACAG-CCTTGACTCTGGACTTTCTTATTTCCACTTCTCTGATG-TTGG  743
      |||||| ||||||||||||||||||||||| |||||||||||||| ||||
seq2  TGACAGCCCTTGACTCTGGACTTTCTTATTCCCACTTCTCTGATGTTTGG  750

seq1  AACCACA-GGCATGCACCAACATACTCAGGTTTATTTTTATGA-CCCCTT  791
      ||||||| |||||||||||||||||||||||||| |||||||| ||||||
seq2  AACCACAGGGCATGCACCAACATACTCAGGTTTA-TTTTATGACCCCCTT  799

seq1  TAAACTCCTTATCCAAAACAC-AATTCTTT-GTTTTACTTATCAGACATA  839
      |||||||| |||||||||||| |||||||| |||||||||||||||||||
seq2  TAAACTCCCTATCCAAAACACAAATTCTTTGGTTTTACTTATCAGACATA  849

seq1  CAAACCCAGA-TTTCA-CCTGTC-TTGACGAGTTGAAAATTATTTAGCTA  886
      |||||||  | ||||| |||||| ||||||||||||||||||||||||||
seq2  CAAACCCCTATTTTCACCCTGTCTTTGACGAGTTGAAAATTATTTAGCTA  899

seq1  GTTTCTCAAGCTTGAAATCCATG-TTGATATTGACTCA-TTTGTTTCTCT  934
      ||||||| |||||||||| |||| |||||||||||||| ||||||||| |
seq2  GTTTCTCCAGCTTGAAAT-CATGTTTGATATTGACTCATTTTGTTTCT-T  947

seq1  TTGCTGCTCATGAATAATAAGCAAACATTAACAGCGGCCTGAGCCCTGTC  984
      ||| || |  | ||||||| ||||||||||||||||| | ||| ||||||
seq2  TTGGTGGTTCTTAATAATATGCAAACATTAACAGCGG-CGGAG-CCTGTC  995

seq1  TAAGCTGCCTTCTACCTCCCATCAGGTTCCCTTGGAATGACTTT-ACA-T  1032
      |||||||||||||| | ||||||||||| |||||| |||| ||| ||| |
seq2  TAAGCTGCCTTCTATCCCCCATCAGGTT-CCTTGG-ATGAATTTAACATT  1043

seq1  CCTCAGTCTGGCAACTACA-CAGCCTACTTACA  1064
      |||||||| ||| |||||| |||||||||||||
seq2  CCTCAGTCGGGC-ACTACACCAGCCTACTTACA  1075