BAC Information

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BAC

Clone NameB6Ng01-105N22
Chromosome16 (Build37)
Map Location 62,721,038 - 62,892,150
singlet/doubletdoublet
Overlap geneNsun3, Arl13b, Stx19, Pros1
Upstream geneLOC100043806
Downstream geneEpha3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-105N22.bB6Ng01-105N22.g
ACCDH913774DH913775
length1,0811,063
definitionDH913774|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N22, 5' end.DH913775|Mus musculus domesticus DNA, BAC clone: B6Ng01-105N22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(62,721,038 - 62,722,126)(62,891,072 - 62,892,150)
sequence
gaattccattaaagataaaatgataatttattatttgttaatgttctttg
acatttcgagtgttagcccacacaatagaaaaattaacaccatttttgtt
tcaattagttattacaagagaaatgagaaagagagctaatgtctttctaa
ccctgtgtgtgcgttgaatcattttttttaaaccttgagtaacctcaagg
tgtcccaaatgagaataataataaaaatgaattcaatggtttcttttctg
aaattttcttaaaaacagaaaaacttaaagtacctttaaagatttcttgg
gaaaataattattttggagatctgccaactcttcagaagtccaaccccaa
atcttataaagaaaatactatttgttcttttttttttcctatcattgagc
atctgacatatggttgaggatcatattctatgtttcccctaattatcttc
agctgtcaccctgacaaacttcacagttatgtgagggccactcaattggg
agactgcctaagtcaggttggcttttaggcctgtctaatggggcacgttc
ttggttgttggtcgatgtaggagggtccagttcagtgtgagcagtacact
gtgtagacagcaatgtttgtgatacagaagaaagctggatgagtgtgagt
tcaagggagaaaaggccagtaaggaacattcttctgtggtttgtctttca
agctcctgccttgagttcttgccttggtcttcctaaatgatggactataa
ctaggaagataatataaaacattcattcccataatttggtttttctcagt
gttttaacacagaaaagagaaaatttaattaatattaaactagtagtgtg
gccaggcaatgttgacagtgcctgtaatcccagcatttgggaggcagaga
caggcagatttctgacttcgaggccagcctggtcgacagagggagttcca
ggatagccacggctatacagaggaaccctgtctcgaaaacaaacaacaaa
caaaacattggtagtgtgtacacctgactgtttatttttttgagaggact
atggaattgtttggtgtttgggattgaaacc
gaattcaatttgtagaccaggctggcctcgaactcagaaacccacctgcc
tctgcctcccaagtgctgggatcaaaggcaagggccaccactgcccgggt
gtttgtatcattttaaaacttcatttgaaaagttcttagaaaccattatc
ttttttcatttcttgaaatgaactaatgacatcaattatttccatctatg
tataaatgtcagtaagtccagggtatttctattctaaattgcatgttcta
agggcaacagatggcgagggtatctgcatgaagggctttatatggccctg
acattttaagtctagacactgtagaaaaggtattgacatctgtggtctaa
tgtgctgaataacctttcctccttgtaaggataactcagcataaattgtg
aatgattaaatcactattatgttcattgtgaaaggaagtatatattgtat
ttttctttttcttttttttttctgtagaacacaaaacttttattgttctg
ataaagaacaaagtgataattcttatcctgatggtctaggtcctaggttc
atgccaaaaacaaacaaactaacaaaaaacaaaacaaaaaccatattgca
tttttctaacaaggaccatggcccctctgcacgtgcaatgacaggacagc
taactaatttaataaggaatattctttttctctttcaacagtgaaaggca
ccagtttgccataaaaaacaaaatataaaatatcaatcaagaacattttt
ccacctaatggattagataataataacacctcccaatagaagaaaaattg
acaataaatttattacctgtctccttaacagtccaagaaacctaaagtta
ggaagcctagtgatattctgcatataataaatataaacctcttctaatag
ttaaaataacaacatagcaaaatgaaaccatgatgcagctaagattatct
gaaactgaaagcacatctcagatttagttcttatttgcttgtatttatct
cctgtcatgctgcaatactcatgaaagaaaagagagtgatggatcagaaa
ataggaataaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_62721038_62722126
seq2: B6Ng01-105N22.b_47_1127

seq1  GAATTCCATTAAAGATAAAATGATAATTTATTATTTGTTAATGTTCTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTAAAGATAAAATGATAATTTATTATTTGTTAATGTTCTTTG  50

seq1  ACATTTCGAGTGTTAGCCCACACAATAGAAAAATTAACACCATTTTTGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTCGAGTGTTAGCCCACACAATAGAAAAATTAACACCATTTTTGTT  100

seq1  TCAATTAGTTATTACAAGAGAAATGAGAAAGAGAGCTAATGTCTTTCTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTAGTTATTACAAGAGAAATGAGAAAGAGAGCTAATGTCTTTCTAA  150

seq1  CCCTGTGTGTGCGTTGAATCATTTTTTTTAAACCTTGAGTAACCTCAAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGTGTGCGTTGAATCATTTTTTTTAAACCTTGAGTAACCTCAAGG  200

seq1  TGTCCCAAATGAGAATAATAATAAAAATGAATTCAATGGTTTCTTTTCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAAATGAGAATAATAATAAAAATGAATTCAATGGTTTCTTTTCTG  250

seq1  AAATTTTCTTAAAAACAGAAAAACTTAAAGTACCTTTAAAGATTTCTTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTCTTAAAAACAGAAAAACTTAAAGTACCTTTAAAGATTTCTTGG  300

seq1  GAAAATAATTATTTTGGAGATCTGCCAACTCTTCAGAAGTCCAACCCCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAATTATTTTGGAGATCTGCCAACTCTTCAGAAGTCCAACCCCAA  350

seq1  ATCTTATAAAGAAAATACTATTTGTTCTTTTTTTTTTCCTATCATTGAGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTATAAAGAAAATACTATTTGTTCTTTTTTTTTTCCTATCATTGAGC  400

seq1  ATCTGACATATGGTTGAGGATCATATTCTATGTTTCCCCTAATTATCTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGACATATGGTTGAGGATCATATTCTATGTTTCCCCTAATTATCTTC  450

seq1  AGCTGTCACCCTGACAAACTTCACAGTTATGTGAGGGCCACTCAATTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTCACCCTGACAAACTTCACAGTTATGTGAGGGCCACTCAATTGGG  500

seq1  AGACTGCCTAAGTCAGGTTGGCTTTTAGGCCTGTCTAATGGGGCACGTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTGCCTAAGTCAGGTTGGCTTTTAGGCCTGTCTAATGGGGCACGTTC  550

seq1  TTGGTTGTTGGTCGATGTAGGAGGGTCCAGTTCAGTGTGAGCAGTACACT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTGTTGGTCGATGTAGGAGGGTCCAGTTCAGTGTGAGCAGTACACT  600

seq1  GTGTAGACAGCAATGTTTGTGATACAGAAGAAAGCTGGATGAGTGTGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTAGACAGCAATGTTTGTGATACAGAAGAAAGCTGGATGAGTGTGAGT  650

seq1  TCAAGGGAGAAAAGGCCAGTAAGGAACATTCTTCTGTGGTTTGTCTTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGGAGAAAAGGCCAGTAAGGAACATTCTTCTGTGGTTTGTCTTTCA  700

seq1  AGCTCCTGCCTTGAGTTCTTGCCTTGGTCTTCCTAAATGATGGACTATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCTGCCTTGAGTTCTTGCCTTGGTCTTCCTAAATGATGGACTATAA  750

seq1  CTAGGAAGATAATATAAAACATTCATTCCCATAATTTGGTTTTTCTCAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAAGATAATATAAAACATTCATTCCCATAATTTGGTTTTTCTCAGT  800

seq1  GTTTTAACACAGAAAAGAGAAAATTTAATTAATATTAAACTAGTAGTGTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAACACAGAAAAGAGAAAATTTAATTAATATTAAACTAGTAGTGTG  850

seq1  GCCAGGCAATGTTGACAGTGCCTGTAATCCCAGCATTTGGGAGGCAGAGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGCAATGTTGACAGTGCCTGTAATCCCAGCATTTGGGAGGCAGAGA  900

seq1  CAGGCAGATTTCTGACTTCGAGGCCAGCCTGGTCGACAGAGGGAGTTCCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGATTTCTGACTTCGAGGCCAGCCTGGTCGACAGAGGGAGTTCCA  950

seq1  GGATAGCCACGGCTATACAGAGAAACCCTGTCTCGAAAAACAAAACAAAC  1000
      |||||||||||||||||||||| |||||||||||| ||||||||   |||
seq2  GGATAGCCACGGCTATACAGAGGAACCCTGTCTCG-AAAACAAA--CAAC  997

seq1  AAACAAAAACATTGGTAGTGTGGTACACCTGACTGTTTTATTTTTTTGAG  1050
      |||| |||||||||||||||| ||||||||||||| ||||||||||||||
seq2  AAAC-AAAACATTGGTAGTGT-GTACACCTGACTG-TTTATTTTTTTGAG  1044

seq1  AGGACTATGGAATTGTTTGGTGTTTGGGATTGGAAAACC  1089
      ||||||||||||||||||||||||||||||||  |||||
seq2  AGGACTATGGAATTGTTTGGTGTTTGGGATTG--AAACC  1081

seq1: chr16_62891072_62892150
seq2: B6Ng01-105N22.g_68_1130 (reverse)

seq1  TCTTTA---ATATTTTCTGGATCCATCCAACCTTCTCTTTTCTTTCCATG  47
      ||||||    |||||||| ||||||||  ||  |||||||||||| ||||
seq2  TCTTTATTCCTATTTTCT-GATCCATC--AC--TCTCTTTTCTTT-CATG  44

seq1  AGTATTTGGCAGCATGACAGGAGATTAAAATACAAGCAAATAAGAACCTA  97
      ||||||  |||||||||||||||||  ||||||||||||||||||||   
seq2  AGTATT--GCAGCATGACAGGAGAT--AAATACAAGCAAATAAGAAC--T  88

seq1  AAATCTGAGATGTGCTTTCCAGTTTCAGAATAATCCTTAGCTGGCATCAT  147
      |||||||||||||||||| ||||||||| ||||| ||||||| |||||||
seq2  AAATCTGAGATGTGCTTT-CAGTTTCAG-ATAAT-CTTAGCT-GCATCAT  134

seq1  GGTTTCATTTTTGCTATTGTTGTTATTTTTAACTATTAGAAGAGGTTTAT  197
      ||||||| |||||||| |||||||| ||||||||||||||||||||||||
seq2  GGTTTCA-TTTTGCTA-TGTTGTTA-TTTTAACTATTAGAAGAGGTTTAT  181

seq1  ATTTATTATATGCAGAATATCACTAGGCTTCCTAACTTTAGGTTTCTTGG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTATATGCAGAATATCACTAGGCTTCCTAACTTTAGGTTTCTTGG  231

seq1  ACTGTTAAGGAGACAGGTAATAAATTTATTGTCAATTTTTCTTCTATTGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTAAGGAGACAGGTAATAAATTTATTGTCAATTTTTCTTCTATTGG  281

seq1  GAGGTGTTATTATTATCTAATCCATTAGGTGGAAAAATGTTCTTGATTGA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTTATTATTATCTAATCCATTAGGTGGAAAAATGTTCTTGATTGA  331

seq1  TATTTTATATTTTGTTTTTTATGGCAAACTGGTGCCTTTCACTGTTGAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTATATTTTGTTTTTTATGGCAAACTGGTGCCTTTCACTGTTGAAA  381

seq1  GAGAAAAAGAATATTCCTTATTAAATTAGTTAGCTGTCCTGTCATTGCAC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAAAGAATATTCCTTATTAAATTAGTTAGCTGTCCTGTCATTGCAC  431

seq1  GTGCAGAGGGGCCATGGTCCTTGTTAGAAAAATGCAATATGGTTTTTGTT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGAGGGGCCATGGTCCTTGTTAGAAAAATGCAATATGGTTTTTGTT  481

seq1  TTGTTTTTTGTTAGTTTGTTTGTTTTTGGCATGAACCTAGGACCTAGACC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTTTGTTAGTTTGTTTGTTTTTGGCATGAACCTAGGACCTAGACC  531

seq1  ATCAGGATAAGAATTATCACTTTGTTCTTTATCAGAACAATAAAAGTTTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGGATAAGAATTATCACTTTGTTCTTTATCAGAACAATAAAAGTTTT  581

seq1  GTGTTCTACAGAAAAAAAAAAGAAAAAGAAAAATACAATATATACTTCCT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCTACAGAAAAAAAAAAGAAAAAGAAAAATACAATATATACTTCCT  631

seq1  TTCACAATGAACATAATAGTGATTTAATCATTCACAATTTATGCTGAGTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACAATGAACATAATAGTGATTTAATCATTCACAATTTATGCTGAGTT  681

seq1  ATCCTTACAAGGAGGAAAGGTTATTCAGCACATTAGACCACAGATGTCAA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTACAAGGAGGAAAGGTTATTCAGCACATTAGACCACAGATGTCAA  731

seq1  TACCTTTTCTACAGTGTCTAGACTTAAAATGTCAGGGCCATATAAAGCCC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTCTACAGTGTCTAGACTTAAAATGTCAGGGCCATATAAAGCCC  781

seq1  TTCATGCAGATACCCTCGCCATCTGTTGCCCTTAGAACATGCAATTTAGA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCAGATACCCTCGCCATCTGTTGCCCTTAGAACATGCAATTTAGA  831

seq1  ATAGAAATACCCTGGACTTACTGACATTTATACATAGATGGAAATAATTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAATACCCTGGACTTACTGACATTTATACATAGATGGAAATAATTG  881

seq1  ATGTCATTAGTTCATTTCAAGAAATGAAAAAAGATAATGGTTTCTAAGAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTAGTTCATTTCAAGAAATGAAAAAAGATAATGGTTTCTAAGAA  931

seq1  CTTTTCAAATGAAGTTTTAAAATGATACAAACACCCGGGCAGTGGTGGCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCAAATGAAGTTTTAAAATGATACAAACACCCGGGCAGTGGTGGCC  981

seq1  CTTGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCTTTGATCCCAGCACTTGGGAGGCAGAGGCAGGTGGGTTTCTGAG  1031

seq1  TTCGAGGCCAGCCTGGTCTACAAATTGAATTC  1079
      ||||||||||||||||||||||||||||||||
seq2  TTCGAGGCCAGCCTGGTCTACAAATTGAATTC  1063