BAC Information

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BAC

Clone NameB6Ng01-106J20
Chromosome16 (Build37)
Map Location 18,409,361 - 18,559,681
singlet/doubletdoublet
Overlap geneComt, Txnrd2, Gnb1l
Upstream geneSnap29, Crkl, Aifm3, Lztr1, Thap7, 4930451C15Rik, P2rxl1, Slc7a4, Smpd4, Pcqap, EG433050, Map1lc3-ps8, EG665892, LOC100042830, Klhl22, Scarf2, Car15, Dgcr2, Tssk1, Tssk2, Es2el, Gscl, Slc25a1, Vpreb2, Dgcr6, Prodh, Rtn4r, EG665975, Zdhhc8, Ranbp1, Htf9c, Dgcr8, D16H22S680E, LOC100042884, Arvcf
Downstream geneTbx1, Gp1bb, Sept5, LOC622795, Cldn5, Cdc45l, Ufd1l, 2510002D24Rik, Mrpl40, Hira, Igl, Igl-C1, Igl-J1, Igl-C3, Igl-J3p, Igl-J3, Igl-V1, Igl-C4, Igl-J4, Igl-C2, Igl-J2, Igl-V3, Igl-V2, Olfr164, Olfr165, Olfr166, Olfr167, Olfr168
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106J20.bB6Ng01-106J20.g
ACCDH914306DH914307
length1,0151,130
definitionDH914306|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J20, 5' end.DH914307|Mus musculus domesticus DNA, BAC clone: B6Ng01-106J20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(18,558,981 - 18,559,681)(18,409,361 - 18,410,506)
sequence
gaattcatgaatgctccagcatgatgggcacagtgtcaccggactttaat
ctcaacactcaggagggagaggcaggcaggtctctgagtttggatccagt
gtggtccaaatagcaagtttccaaacagccaggactatatacagaaacca
tatatctcaaaacaaaacaaaacaacaacaacaaaacaacccaggattct
tcactgtataaaacacaaccctctgggctgctatggcagcacacgtcatc
ctggttcttaggagacagaggcagggtcaggagttcaaagtcatccttgg
ctacatagtaagactgagggaagtttgggctgcatgaaatgtctcaaaaa
ttaaaaataagggggctggaaagatggctcagccattaagagcacttgct
gttcttctagaggacccatattcgattcctgtcacccacattttacctgt
cagccatctgtaactgcagtttcaggggatctgacacctccttctggcct
ctgctggcactgaacacacatggttaacaggcacacacaaaacacccaca
cacataaaatacaaatatttttaaaatattaaaataaaagaaaatgtatg
aaagaatgaaaaaaaagaataaaagaatatcagaaacaactgcagcaggg
cggcagagcaaaagggctatacaagagacacacctacatcttgaagggcc
aggaaggattaagaaaacctaaaccttggtctaagccacactaacagctg
gttgatagacctcttttccagaaagtgactgaagaaaactaggaaggtaa
ttactttattgggttgttctaaagctggcttttaaatgcataaagcaaga
aaacaatggggatggagaagagggaaagggcaagggtccagctcagctct
cactatgggcctaaggccacatatgtgcctaccgggcatctagtgcacag
tggagtacctagagagaccctttttcttctcagcacttgtgttcatttgt
gcaaacagcccagct
gaattctcaggccacccagggaattccaggtaagactgcatctgtgtctg
agtgctggggcttctatgctaaggagatagagtactgaatgctataggta
agacaagatgcttgctttgtgagacaatatcttattgtgtaacctaggct
ggcctccagcagatgatcctcctgccttcaagtactgagattgtccgtgt
gcagcagtaagcctgggtacaagtagttttagtttatgatctctattctt
aaaggttcttcctttgggttcaattccctacaatcatacattgaaaaaaa
aaatgagtgtgcccatttccaatgtatgcctctcttctggagctaattgc
cagctttaagcagcagcactgaaaaccgttagtttcctagttactgaaca
gcagtatttccgtcttttctaaaggcaggcctcttcaatgatcacacaca
gaaagtgcagaagcccaactccctgcactgtgcttgactctcctgtatag
gtagagcctgactgctcagctgcctttctctgttctcagtaggtaacatc
gtgttcagtgtctgccagggacaggaccctgtctgaggcagcttcccatg
gttgaccgggcctgctggtctcctttttgcctgccctgggctatccctgc
ctctgaccctagtgagcccatgcctgaattttcctttgtctgtgttctta
cacgcaccagagccatctgaatcctgcccaagccacagtggccctgtcct
gcccctgggcttactgcctgatcctcccacattcgggactccactgtata
tgacagggtatacagctcttgagacagctggctggtaaataccacatgga
cagccccattggctgtgaaggctgtgaggagaccaagtgagggccaagga
gccattccatgtctctttgcaggccaccagagcaggacaaggtaatgtcc
cttatactctagtcacttgggagtagggatggcttcccagtcagagctgg
gttctgctagggaaagtggcttgggcagggctgaggctgaaaagcttagg
gagcgtaaacatgcttgccatccgtggtagcccagttgaccccagccgac
catttgcaccagtcgcttccttgggtacta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_18558981_18559681
seq2: B6Ng01-106J20.b_44_744 (reverse)

seq1  TGGCCCTTCAAGATGTAGGTGTGTCTCTTGTATAGCCCTTTTGCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTTCAAGATGTAGGTGTGTCTCTTGTATAGCCCTTTTGCTCTGCC  50

seq1  GCCCTGCTGCAGTTGTTTCTGATATTCTTTTATTCTTTTTTTTCATTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGCTGCAGTTGTTTCTGATATTCTTTTATTCTTTTTTTTCATTCTT  100

seq1  TCATACATTTTCTTTTATTTTAATATTTTAAAAATATTTGTATTTTATGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACATTTTCTTTTATTTTAATATTTTAAAAATATTTGTATTTTATGT  150

seq1  GTGTGGGTGTTTTGTGTGTGCCTGTTAACCATGTGTGTTCAGTGCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGGGTGTTTTGTGTGTGCCTGTTAACCATGTGTGTTCAGTGCCAGCA  200

seq1  GAGGCCAGAAGGAGGTGTCAGATCCCCTGAAACTGCAGTTACAGATGGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGAAGGAGGTGTCAGATCCCCTGAAACTGCAGTTACAGATGGCT  250

seq1  GACAGGTAAAATGTGGGTGACAGGAATCGAATATGGGTCCTCTAGAAGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTAAAATGTGGGTGACAGGAATCGAATATGGGTCCTCTAGAAGAA  300

seq1  CAGCAAGTGCTCTTAATGGCTGAGCCATCTTTCCAGCCCCCTTATTTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAAGTGCTCTTAATGGCTGAGCCATCTTTCCAGCCCCCTTATTTTTA  350

seq1  ATTTTTGAGACATTTCATGCAGCCCAAACTTCCCTCAGTCTTACTATGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGACATTTCATGCAGCCCAAACTTCCCTCAGTCTTACTATGTA  400

seq1  GCCAAGGATGACTTTGAACTCCTGACCCTGCCTCTGTCTCCTAAGAACCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAGGATGACTTTGAACTCCTGACCCTGCCTCTGTCTCCTAAGAACCA  450

seq1  GGATGACGTGTGCTGCCATAGCAGCCCAGAGGGTTGTGTTTTATACAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGACGTGTGCTGCCATAGCAGCCCAGAGGGTTGTGTTTTATACAGTG  500

seq1  AAGAATCCTGGGTTGTTTTGTTGTTGTTGTTTTGTTTTGTTTTGAGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCCTGGGTTGTTTTGTTGTTGTTGTTTTGTTTTGTTTTGAGATAT  550

seq1  ATGGTTTCTGTATATAGTCCTGGCTGTTTGGAAACTTGCTATTTGGACCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTTCTGTATATAGTCCTGGCTGTTTGGAAACTTGCTATTTGGACCA  600

seq1  CACTGGATCCAAACTCAGAGACCTGCCTGCCTCTCCCTCCTGAGTGTTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGATCCAAACTCAGAGACCTGCCTGCCTCTCCCTCCTGAGTGTTGA  650

seq1  GATTAAAGTCCGGTGACACTGTGCCCATCATGCTGGAGCATTCATGAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAGTCCGGTGACACTGTGCCCATCATGCTGGAGCATTCATGAATT  700

seq1  C  701
      |
seq2  C  701

seq1: chr16_18409361_18410506
seq2: B6Ng01-106J20.g_69_1197

seq1  GAATTCTCAGGCCACCCAGGGAATTCCAGGTAAGACTGCATCTGTGTCTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGCCACCCAGGGAATTCCAGGTAAGACTGCATCTGTGTCTG  50

seq1  AGTGCTGGGGCTTCTATGCTAAGGAGATAGAGTACTGAATGCTATAGGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTGGGGCTTCTATGCTAAGGAGATAGAGTACTGAATGCTATAGGTA  100

seq1  AGACAAGATGCTTGCTTTGTGAGACAATATCTTATTGTGTAACCTAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGATGCTTGCTTTGTGAGACAATATCTTATTGTGTAACCTAGGCT  150

seq1  GGCCTCCAGCAGATGATCCTCCTGCCTTCAAGTACTGAGATTGTCCGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCCAGCAGATGATCCTCCTGCCTTCAAGTACTGAGATTGTCCGTGT  200

seq1  GCAGCAGTAAGCCTGGGTACAAGTAGTTTTAGTTTATGATCTCTATTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAGTAAGCCTGGGTACAAGTAGTTTTAGTTTATGATCTCTATTCTT  250

seq1  AAAGGTTCTTCCTTTGGGTTCAATTCCCTACAATCATACATTGAAAAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTCTTCCTTTGGGTTCAATTCCCTACAATCATACATTGAAAAAAA  300

seq1  AAATGAGTGTGCCCATTTCCAATGTATGCCTCTCTTCTGGAGCTAATTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAGTGTGCCCATTTCCAATGTATGCCTCTCTTCTGGAGCTAATTGC  350

seq1  CAGCTTTAAGCAGCAGCACTGAAAACCGTTAGTTTCCTAGTTACTGAACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTTTAAGCAGCAGCACTGAAAACCGTTAGTTTCCTAGTTACTGAACA  400

seq1  GCAGTATTTCCGTCTTTTCTAAAGGCAGGCCTCTTCAATGATCACACACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATTTCCGTCTTTTCTAAAGGCAGGCCTCTTCAATGATCACACACA  450

seq1  GAAAGTGCAGAAGCCCAACTCCCTGCACTGTGCTTGACTCTCCTGTATAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGCAGAAGCCCAACTCCCTGCACTGTGCTTGACTCTCCTGTATAG  500

seq1  GTAGAGCCTGACTGCTCAGCTGCCTTTCTCTGTTCTCAGTAGGTAACATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGCCTGACTGCTCAGCTGCCTTTCTCTGTTCTCAGTAGGTAACATC  550

seq1  GTGTTCAGTGTCTGCCAGGGACAGGACCCTGTCTGAGGCAGCTTCCCATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTCAGTGTCTGCCAGGGACAGGACCCTGTCTGAGGCAGCTTCCCATG  600

seq1  GTTGACCGGGCCTGCTGGTCTCCTTTTTGCCTGCCCTGGGCTATCCCTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCGGGCCTGCTGGTCTCCTTTTTGCCTGCCCTGGGCTATCCCTGC  650

seq1  CTCTGACCCTAGTGAGCCCATGCCTGAATTTTCCTTTGTCTGTGTTCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACCCTAGTGAGCCCATGCCTGAATTTTCCTTTGTCTGTGTTCTTA  700

seq1  CACGCACCAGAGCCATCTGAATCCTGCCCAAGCCACAGTGGCCCTGTCCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCACCAGAGCCATCTGAATCCTGCCCAAGCCACAGTGGCCCTGTCCT  750

seq1  GCCCCTGGGCTTACTGCCTGATCCTCCCACATTCGGGACTCCACTGTATA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTGGGCTTACTGCCTGATCCTCCCACATTCGGGACTCCACTGTATA  800

seq1  TGACAGGGTATACAGCTCTTGAGACAGCTGGCTGGTAAATACCACATGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGGTATACAGCTCTTGAGACAGCTGGCTGGTAAATACCACATGGA  850

seq1  CAGCCCCATTGGCTGTGAAAGGCTGTGAGGAGACCAAGTGAGGGCCAAGG  900
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CAGCCCCATTGGCTGTG-AAGGCTGTGAGGAGACCAAGTGAGGGCCAAGG  899

seq1  AGCCATTCCATGTCTCTTTGCAGGCCACCAGAGCAGGACAAGGTAATGTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGCCATTCCATGTCTCTTTGCAGGCCACCAGAGCAGGACAAGGTAATGT-  948

seq1  CCCTTATACTCTAGTCACTTGGGAGTAGGGATGGCTTCCCCAGTCAGAGC  1000
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCCTTATACTCTAGTCACTTGGGAGTAGGGATGGCTT-CCCAGTCAGAGC  997

seq1  TGGGGTCCTGCTAGGGGAAAGTGGC-TGGGCAGTGCTGAGGGCTGAAAAG  1049
      | |||| |||||| ||||||||||| ||||||| ||||| ||||||||| 
seq2  T-GGGTTCTGCTA-GGGAAAGTGGCTTGGGCAGGGCTGA-GGCTGAAAA-  1043

seq1  GCTTAGGGAGCGTAGACATGCTTGCCATCCCCGTGGGTAGCCCCAGTTGA  1099
      |||||||||||||| |||||||||||||  |||| ||||| |||||||||
seq2  GCTTAGGGAGCGTAAACATGCTTGCCAT--CCGT-GGTAG-CCCAGTTGA  1089

seq1  CCCCCAGTCAGACCCATTTGACACCCAGTTCTGCTCCCTTGGGTACT  1146
       |||||| | || ||||||| || |||||   ||| |||||||||||
seq2  -CCCCAG-CCGA-CCATTTG-CA-CCAGT--CGCTTCCTTGGGTACT  1129