BAC Information

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BAC

Clone NameB6Ng01-106L05
Chromosome16 (Build37)
Map Location 66,108,680 - 66,297,700
singlet/doubletdoublet
Overlap geneLOC100039035
Upstream geneLOC672931, Pou1f1, Chmp2b, EG383186, Vgll3, LOC664846
Downstream geneCadm2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-106L05.bB6Ng01-106L05.g
ACCDH914363DH914364
length1,1501,105
definitionDH914363|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L05, 5' end.DH914364|Mus musculus domesticus DNA, BAC clone: B6Ng01-106L05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,296,448 - 66,297,700)(66,108,680 - 66,109,796)
sequence
gaattctgtgattcagtctatggctcctctgtaacacagtgtctattatc
atgaatattataggtcggcatgtacaaagtataacatggacgtatgatgt
ttttactgctaagctatttcttagtattcttatcaaaggaatgtcccctt
gtcttagtgagagtacatatggaaacgataaatgtatttaatatatgtga
gatcatctcaaaatattcttttaactattttataactttatttagacttt
aaggcacattctgacattttcaactgctattggagagtgtggtagtttca
aaacttggtttaatcatataaccatataatctagacatttagagttactc
aagttatcaacaataactcagaatctctgaaaaccacgtgattttcttca
tcttccttcaactattagcactttataatgtagcaaagaaactgcaacta
atcccgttgtagggtcaccagaactcaggcacttgttctgttttgttttt
ttttttctgaaataaatattgtggcagagataaagttggaaactatacat
tgttgattcatgaaaggtattatttatggtgaattcattatgtttctaat
agtatatattcaggttataaaatttcttgttcagaagagaaaaaaatcca
ggtatgagagtcaaaaataattaaggaaatgataaataattgttgcttat
caaacttgtagaacaaagccagtctatagaattaaagaatataagttgaa
gaagttaaattactttagaaaaaaaaaactctacagcactgttcgacctg
tatatccttgggcaatgtctatggaaatatttcttagaattgcagtcatt
tagtagaatgactacacattaaagggagaatacatgcctatgccttttcg
tactgatggagtagtctttttgatttggtaacaaatcatgaaattgcaaa
ataccatattgttcctgggtaatcagcagagattttgcttattgagtgat
agcggtttttgacccagatgctttcaggatttaacattatcttaggtact
atcatattctactagttcctaaatacattgcagcaatgaatgggtgccag
ttggcaactaaagctttcaactttgactcttgaccagtgccatatcatca

gaattctcttctctggacctcaaattatctggtactattatccagtagtt
gtcagtaatattgactccttgacatagtgctaatttgatgagtattttat
aatttggtggtggaatgtgtcttgaaattcaaggtctaaaaaaaaaaatt
gtgtcacatcaggcagaagacaataaattgcattatagaatgattgtcag
attggtagaaaatctcaatgaagcacacttgatagtatcaaaacttttta
aaaaactattttatttgcttctctctggcttcaaaatactggccttggta
tcttataagttcactcattagttatgtaaacatatgtaaacacatttata
ttaagtgagcaatacagcatcacatgtaaattttaactgtccatccacta
tatgactatatataccgcatcccctaattaattattatagaaaatttata
taattttataatagtttttgaagtaatatttagataacaccagagtagcc
tttaaaggtcaataaacacatcggaagtcatttacaatgaagaattcttc
ctctgaaattgaaaaacctcatctgttttcagtgaataaatatcattgtg
ctgactgacagaatcatacattttatatttatgatgaatgatgagtgtag
taaatctggactttgataaaaataaaaacagttttcttaaagtgaacata
gtctattggctggtcattttagggctcatgtaaagaatttcttcatggat
gcatttatataataatctggccctatgtaaaacttgattgttttctctgg
ttagatagatttcatcagtctacaggacatagtatcaagtaacaagagca
ttggggctatcaaggaatggccaatataataggtggatgcccaggctaac
ccttcttcacagtgcatgtagaagagtaaacaagtcatgtttgtgataac
agaaggaaagaccatccagagactgccccactgggatcatcccatattac
accatcaaaccagacactatgcattttcagaagattgcttacagacctga
catagctccttcttgttagctatggcaatgcctgccaataaagagttgat
gctca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_66296448_66297700
seq2: B6Ng01-106L05.b_43_1192 (reverse)

seq1  TGATGATATGAACAGTACCCTAGAAAGTGCTTACATCTTTATTGCATCAC  50
                                                        
seq2  --------------------------------------------------  0

seq1  CTATACTGACATCCCAGAGTCATGCATTTCAGTTCTTTGATTTGATTTTG  100
                                                ||||  | 
seq2  ------------------------------------------TGATGATA  8

seq1  TGCCACTGGTCAAAGAGTCAAAGTTGGAAGCTTTATGTTGCCAACTGGCA  150
      || |||||||| |||||||||||||| |||||||| ||||||||||||||
seq2  TGGCACTGGTC-AAGAGTCAAAGTTGAAAGCTTTA-GTTGCCAACTGGCA  56

seq1  CCATTTCATTGCTGCTATGTATTTAGGAACTAGTAAGATAATGATAGGTA  200
      ||  ||||||||||| |||||||||||||||||| |||  |||||| |||
seq2  CCCATTCATTGCTGCAATGTATTTAGGAACTAGT-AGAATATGATA-GTA  104

seq1  CCTAAGATAATGTTAAATTCTGATAGCATCTTGGGTCAAATAACGCTTAT  250
      |||||||||||||||||| |||| |||||| ||||||||| | ||| |||
seq2  CCTAAGATAATGTTAAATCCTGAAAGCATC-TGGGTCAAAAACCGC-TAT  152

seq1  CACTCAATTAAGCAAAATCTTCTTGCCTGATTACCCAGGAACAATTATGG  300
      ||||||| ||||||||||| |||   |||||||||||||||||| |||||
seq2  CACTCAA-TAAGCAAAATC-TCT--GCTGATTACCCAGGAACAA-TATGG  197

seq1  TATTTTGCAATTTTCATGATTTGTTACCAAATCAAAAAGACTACTCCATC  350
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGCAA-TTTCATGATTTGTTACCAAATCAAAAAGACTACTCCATC  246

seq1  AGTACGAAAAGGCATAGGCATGTATTCT-CCTTTAATGTGTAGTCATTCT  399
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AGTACGAAAAGGCATAGGCATGTATTCTCCCTTTAATGTGTAGTCATTCT  296

seq1  ACTAAATGACTGCAATTCTAAGAAATATTTCCATAGACATTGCCCAAGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGACTGCAATTCTAAGAAATATTTCCATAGACATTGCCCAAGGA  346

seq1  TATACAGGTCGAACAGTGCTGTAGAGTTTTTTTTTTCTAAAGTAATTTAA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAGGTCGAACAGTGCTGTAGAGTTTTTTTTTTCTAAAGTAATTTAA  396

seq1  CTTCTTCAACTTATATTCTTTAATTCTATAGACTGGCTTTGTTCTACAAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTCAACTTATATTCTTTAATTCTATAGACTGGCTTTGTTCTACAAG  446

seq1  TTTGATAAGCAACAATTATTTATCATTTCCTTAATTATTTTTGACTCTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAAGCAACAATTATTTATCATTTCCTTAATTATTTTTGACTCTCA  496

seq1  TACCTGGATTTTTTTCTCTTCTGAACAAGAAATTTTATAACCTGAATATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGGATTTTTTTCTCTTCTGAACAAGAAATTTTATAACCTGAATATA  546

seq1  TACTATTAGAAACATAATGAATTCACCATAAATAATACCTTTCATGAATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATTAGAAACATAATGAATTCACCATAAATAATACCTTTCATGAATC  596

seq1  AACAATGTATAGTTTCCAACTTTATCTCTGCCACAATATTTATTTCAGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATGTATAGTTTCCAACTTTATCTCTGCCACAATATTTATTTCAGAA  646

seq1  AAAAAAAAACAAAACAGAACAAGTGCCTGAGTTCTGGTGACCCTACAACG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAACAAAACAGAACAAGTGCCTGAGTTCTGGTGACCCTACAACG  696

seq1  GGATTAGTTGCAGTTTCTTTGCTACATTATAAAGTGCTAATAGTTGAAGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAGTTGCAGTTTCTTTGCTACATTATAAAGTGCTAATAGTTGAAGG  746

seq1  AAGATGAAGAAAATCACGTGGTTTTCAGAGATTCTGAGTTATTGTTGATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATGAAGAAAATCACGTGGTTTTCAGAGATTCTGAGTTATTGTTGATA  796

seq1  ACTTGAGTAACTCTAAATGTCTAGATTATATGGTTATATGATTAAACCAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGTAACTCTAAATGTCTAGATTATATGGTTATATGATTAAACCAA  846

seq1  GTTTTGAAACTACCACACTCTCCAATAGCAGTTGAAAATGTCAGAATGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGAAACTACCACACTCTCCAATAGCAGTTGAAAATGTCAGAATGTG  896

seq1  CCTTAAAGTCTAAATAAAGTTATAAAATAGTTAAAAGAATATTTTGAGAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAAAGTCTAAATAAAGTTATAAAATAGTTAAAAGAATATTTTGAGAT  946

seq1  GATCTCACATATATTAAATACATTTATCGTTTCCATATGTACTCTCACTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCACATATATTAAATACATTTATCGTTTCCATATGTACTCTCACTA  996

seq1  AGACAAGGGGACATTCCTTTGATAAGAATACTAAGAAATAGCTTAGCAGT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAAGGGGACATTCCTTTGATAAGAATACTAAGAAATAGCTTAGCAGT  1046

seq1  AAAAACATCATACGTCCATGTTATACTTTGTACATGCCGACCTATAATAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATCATACGTCCATGTTATACTTTGTACATGCCGACCTATAATAT  1096

seq1  TCATGATAATAGACACTGTGTTACAGAGGAGCCATAGACTGAATCACAGA  1249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATAATAGACACTGTGTTACAGAGGAGCCATAGACTGAATCACAGA  1146

seq1  ATTC  1253
      ||||
seq2  ATTC  1150

seq1: chr16_66108680_66109796
seq2: B6Ng01-106L05.g_67_1171

seq1  GAATTCTCTTCTCTGGACCTCAAATTATCTGGTACTATTATCCAGTAGTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTCTCTGGACCTCAAATTATCTGGTACTATTATCCAGTAGTT  50

seq1  GTCAGTAATATTGACTCCTTGACATAGTGCTAATTTGATGAGTATTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTAATATTGACTCCTTGACATAGTGCTAATTTGATGAGTATTTTAT  100

seq1  AATTTGGTGGTGGAATGTGTCTTGAAATTCAAGGTCTAAAAAAAAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGGTGGTGGAATGTGTCTTGAAATTCAAGGTCTAAAAAAAAAAATT  150

seq1  GTGTCACATCAGGCAGAAGACAATAAATTGCATTATAGAATGATTGTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCACATCAGGCAGAAGACAATAAATTGCATTATAGAATGATTGTCAG  200

seq1  ATTGGTAGAAAATCTCAATGAAGCACACTTGATAGTATCAAAACTTTTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAGAAAATCTCAATGAAGCACACTTGATAGTATCAAAACTTTTTA  250

seq1  AAAAACTATTTTATTTGCTTCTCTCTGGCTTCAAAATACTGGCCTTGGTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACTATTTTATTTGCTTCTCTCTGGCTTCAAAATACTGGCCTTGGTA  300

seq1  TCTTATAAGTTCACTCATTAGTTATGTAAACATATGTAAACACATTTATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATAAGTTCACTCATTAGTTATGTAAACATATGTAAACACATTTATA  350

seq1  TTAAGTGAGCAATACAGCATCACATGTAAATTTTAACTGTCCATCCACTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTGAGCAATACAGCATCACATGTAAATTTTAACTGTCCATCCACTA  400

seq1  TATGACTATATATACCGCATCCCCTAATTAATTATTATAGAAAATTTATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGACTATATATACCGCATCCCCTAATTAATTATTATAGAAAATTTATA  450

seq1  TAATTTTATAATAGTTTTTGAAGTAATATTTAGATAACACCAGAGTAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTATAATAGTTTTTGAAGTAATATTTAGATAACACCAGAGTAGCC  500

seq1  TTTAAAGGTCAATAAACACATCGGAAGTCATTTACAATGAAGAATTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGTCAATAAACACATCGGAAGTCATTTACAATGAAGAATTCTTC  550

seq1  CTCTGAAATTGAAAAACCTCATCTGTTTTCAGTGAATAAATATCATTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAAATTGAAAAACCTCATCTGTTTTCAGTGAATAAATATCATTGTG  600

seq1  CTGACTGACAGAATCATACATTTTATATTTATGATGAATGATGAGTGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGACAGAATCATACATTTTATATTTATGATGAATGATGAGTGTAG  650

seq1  TAAATCTGGACTTTGATAAAAATAAAAACAGTTTTCTTAAAGTGAACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCTGGACTTTGATAAAAATAAAAACAGTTTTCTTAAAGTGAACATA  700

seq1  GTCTATTGGCTGGTCATTTTAGGGCTCATGTAAAGAATTTCTTCATGGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTATTGGCTGGTCATTTTAGGGCTCATGTAAAGAATTTCTTCATGGAT  750

seq1  GCATTTATATAATAATCTGGCCCTATGTAAAACTTGATTGTTTTCTCTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTTATATAATAATCTGGCCCTATGTAAAACTTGATTGTTTTCTCTGG  800

seq1  TTAGATAGATTTCATCAGTCTACAGGACATAGTATC-AGTAACAAGAGCA  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTAGATAGATTTCATCAGTCTACAGGACATAGTATCAAGTAACAAGAGCA  850

seq1  TTGGGGCTATCAAGGAATGGCCAATATAATAGGTGGATGCCCAGGGCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTGGGGCTATCAAGGAATGGCCAATATAATAGGTGGATGCCCA-GGCTAA  899

seq1  CCCTTC-TCACAGTGCATGTAG-AGAGTAAACAAGTCATGTTTGTGATAA  947
      |||||| ||||||||||||||| |||||||||||||||||||||||||||
seq2  CCCTTCTTCACAGTGCATGTAGAAGAGTAAACAAGTCATGTTTGTGATAA  949

seq1  CAGAAGGAAAGACCATCCAGAGACTGCCCCACCTGGGGATCCATCCCATA  997
      ||||||||||||||||||||||||||||||||   ||||| |||||||||
seq2  CAGAAGGAAAGACCATCCAGAGACTGCCCCAC--TGGGAT-CATCCCATA  996

seq1  TACAACCATCAAACCCAGACACTATTGCATATTCCAGAAAGATTTTGCTA  1047
      |   ||||||||| |||||||||| ||||| || ||| ||||  ||||| 
seq2  TTACACCATCAAA-CCAGACACTA-TGCAT-TTTCAG-AAGA--TTGCTT  1040

seq1  ACAGGACCCTGACATAGCTCCCTCTTGTAAGGCTATGCCAATGCCTGGCA  1097
      ||||   |||||||||||||| |||||| | |||||| |||||||| || 
seq2  ACAG--ACCTGACATAGCTCCTTCTTGTTA-GCTATGGCAATGCCT-GCC  1086

seq1  AATAAAGAAGTTGATGCTCA  1117
      ||||||| ||||||||||||
seq2  AATAAAG-AGTTGATGCTCA  1105