BAC Information

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BAC

Clone NameB6Ng01-107B17
Chromosome16 (Build37)
Map Location 92,960,333 - 93,155,670
singlet/doubletdoublet
Overlap genenone
Upstream geneMrps6, Slc5a3, Kcne2, 1190017O12Rik, 4930563D23Rik, Kcne1, Dscr1, 2410124H12Rik, Clic6, Runx1, EG666023
Downstream geneLOC100040747, Setd4, LOC670912, Cbr1, EG435489, Cbr3, Dopey2, Morc3, Chaf1b, Cldn14, Sim2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-107B17.bB6Ng01-107B17.g
ACCDH914666DH914667
length657934
definitionDH914666|Mus musculus domesticus DNA, BAC clone: B6Ng01-107B17, 5' end.DH914667|Mus musculus domesticus DNA, BAC clone: B6Ng01-107B17, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,960,333 - 92,960,989)(93,154,733 - 93,155,670)
sequence
gaattcaacctcttgtctttataagtactcagccttgagtatttcactac
aacagtaagagtacaaacactaatccattgcctatattataaataccgtg
agagtccagagctcctacccactctagtaaactaaacagatttaatgttc
acatcatactgtagagcacttgacaaggcacactgataagtgagatgaag
cgtcagcgcagccagagattcaaagcacagatttcttcccaagctcatgt
gctctctatttccctaacacagctcatgggacctggaaactaaattcata
atgttgtcaatccatacagagtttgggctctgaccaatcagaaaagactc
tgaggggtggaacaatgtctgtctattccagaacatcccagcatggtatc
aacctgacagtcccaccagcaccataggggcagtcacaccatcatgtctg
taccatgtgggaagtggcaggtccacagaaggacctccgtgtgactttcc
ctgttgggaaagcatttagaagaaaaaggatcccgacatcttttgggata
gatttttggaaggcgactggggtttagtgtatggtttttcttaaccattg
tctgctcggtttgaagttctctctctctctctctctctctctctctctct
ctctctc
gaattccatgtctgagggaagaaaagaagggagagaaattaatgcacata
agtaaagaaagaaaaacggccactcttcttttagagaaattctctagtct
agggaagaccttcacctagaagaacttccttgtcctccagagtcatcttt
tagggaacggaagttaaaggaggtgtcccaggctctctgaggttacgatc
tccttggcttatttccagtccgtggggagagttaactgagaaaggcaggc
gtgccgtgagtgccttgtgggtctcagcagtgcactggatctgtcttctg
acagccatagttgagcagtgagcctgtccagtgtgagaggtggtttgttc
ttttgtatgatctaggggctgaagaaccacaggctgccgtagtcataggg
ccagagcctggagttgcaaagcagcaactccatccaggggaaggcagatg
ctagctctcagggcagcctgctcttggtggccatattgaaaaccagatgg
ggaagtgataaggcccagcattgtacagctgattggactgctgtcattgt
tcatcctcacaaatatcatctacaagtaacaataggaaccaatagttttt
gtggggttttactttttttttaaatgatggcctagggatagatcacggta
tttgagtaatggactagcatgtgtaaaacccaaggttttgcttcacatgc
acacacacatacacacacacacacacacacacacctactcaatatggata
ttttaggtggttgtttcttcaaatgttttgttgtacaactgaaatccttt
tgagggtgtcattacttactgttctgctggcttagaaaaagtcacatgaa
gagtcagacaacctttcatacactgagtccctgcggtgagattaatagta
gatggctggttacatataattgcctggttaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_92960333_92960989
seq2: B6Ng01-107B17.b_44_700

seq1  GAATTCAACCTCTTGTCTTTATAAGTACTCAGCCTTGAGTATTTCACTAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAACCTCTTGTCTTTATAAGTACTCAGCCTTGAGTATTTCACTAC  50

seq1  AACAGTAAGAGTACAAACACTAATCCATTGCCTATATTATAAATACCGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTAAGAGTACAAACACTAATCCATTGCCTATATTATAAATACCGTG  100

seq1  AGAGTCCAGAGCTCCTACCCACTCTAGTAAACTAAACAGATTTAATGTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCCAGAGCTCCTACCCACTCTAGTAAACTAAACAGATTTAATGTTC  150

seq1  ACATCATACTGTAGAGCACTTGACAAGGCACACTGATAAGTGAGATGAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCATACTGTAGAGCACTTGACAAGGCACACTGATAAGTGAGATGAAG  200

seq1  CGTCAGCGCAGCCAGAGATTCAAAGCACAGATTTCTTCCCAAGCTCATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCAGCGCAGCCAGAGATTCAAAGCACAGATTTCTTCCCAAGCTCATGT  250

seq1  GCTCTCTATTTCCCTAACACAGCTCATGGGACCTGGAAACTAAATTCATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTCTATTTCCCTAACACAGCTCATGGGACCTGGAAACTAAATTCATA  300

seq1  ATGTTGTCAATCCATACAGAGTTTGGGCTCTGACCAATCAGAAAAGACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTGTCAATCCATACAGAGTTTGGGCTCTGACCAATCAGAAAAGACTC  350

seq1  TGAGGGGTGGAACAATGTCTGTCTATTCCAGAACATCCCAGCATGGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGGTGGAACAATGTCTGTCTATTCCAGAACATCCCAGCATGGTATC  400

seq1  AACCTGACAGTCCCACCAGCACCATAGGGGCAGTCACACCATCATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGACAGTCCCACCAGCACCATAGGGGCAGTCACACCATCATGTCTG  450

seq1  TACCATGTGGGAAGTGGCAGGTCCACAGAAGGACCTCCGTGTGACTTTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCATGTGGGAAGTGGCAGGTCCACAGAAGGACCTCCGTGTGACTTTCC  500

seq1  CTGTTGGGAAAGCATTTAGAAGAAAAAGGATCCCGACATCTTTTGGGATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGGGAAAGCATTTAGAAGAAAAAGGATCCCGACATCTTTTGGGATA  550

seq1  GATTTTTGGAAGGCGACTGGGGTTTAGTGTATGGTTTTTCTTAACCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTTGGAAGGCGACTGGGGTTTAGTGTATGGTTTTTCTTAACCATTG  600

seq1  TCTGCTCGGTTTGAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCGGTTTGAAGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  650

seq1  CTCTCTC  657
      |||||||
seq2  CTCTCTC  657

seq1: chr16_93154733_93155670
seq2: B6Ng01-107B17.g_66_999 (reverse)

seq1  AAATTAACCAGCAATTTATATGTAACCAGCCATCTACTATTTAATCTCAC  50
      |||||||||||  | |||||||||||||||||||||||| ||||||||||
seq2  AAATTAACCAGGCAATTATATGTAACCAGCCATCTACTA-TTAATCTCAC  49

seq1  CGCAGGGACTTCAGTGTATGAAAGGTTGTCTGACTCTTTCATGTGACTTT  100
      ||||||||| |||||||||||||||||||||||||| |||||||||||||
seq2  CGCAGGGAC-TCAGTGTATGAAAGGTTGTCTGACTC-TTCATGTGACTTT  97

seq1  TTCTAAGCCAAGCAGAAGCAGTAAGTTATGACACCCTCAAAAGGATTTCA  150
      ||||||||| ||||||| |||||||| |||||||||||||||||||||||
seq2  TTCTAAGCC-AGCAGAA-CAGTAAGTAATGACACCCTCAAAAGGATTTCA  145

seq1  GTTGTACAACAAAACATTTGAAGAAACAACCACCTAAAATATCCATATTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTACAACAAAACATTTGAAGAAACAACCACCTAAAATATCCATATTG  195

seq1  AGTAGGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGCATGTGAAGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGGTGTGTGTGTGTGTGTGTGTGTGTATGTGTGTGTGCATGTGAAGC  245

seq1  -AAACCTTGGGTTTTACACATGCTAGTCCATTACTCAAATACCGTGATCT  299
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACCTTGGGTTTTACACATGCTAGTCCATTACTCAAATACCGTGATCT  295

seq1  ATCCCTAGGCCATCATTTAAAAAAAAAGTAAAACCCCACAAAAACTATTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCTAGGCCATCATTTAAAAAAAAAGTAAAACCCCACAAAAACTATTG  345

seq1  GTTCCTATTGTTACTTGTAGATGATATTTGTGAGGATGAACAATGACAGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTATTGTTACTTGTAGATGATATTTGTGAGGATGAACAATGACAGC  395

seq1  AGTCCAATCAGCTGTACAATGCTGGGCCTTATCACTTCCCCATCTGGTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAATCAGCTGTACAATGCTGGGCCTTATCACTTCCCCATCTGGTTT  445

seq1  TCAATATGGCCACCAAGAGCAGGCTGCCCTGAGAGCTAGCATCTGCCTTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATATGGCCACCAAGAGCAGGCTGCCCTGAGAGCTAGCATCTGCCTTC  495

seq1  CCCTGGATGGAGTTGCTGCTTTGCAACTCCAGGCTCTGGCCCTATGACTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGATGGAGTTGCTGCTTTGCAACTCCAGGCTCTGGCCCTATGACTA  545

seq1  CGGCAGCCTGTGGTTCTTCAGCCCCTAGATCATACAAAAGAACAAACCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCAGCCTGTGGTTCTTCAGCCCCTAGATCATACAAAAGAACAAACCAC  595

seq1  CTCTCACACTGGACAGGCTCACTGCTCAACTATGGCTGTCAGAAGACAGA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACACTGGACAGGCTCACTGCTCAACTATGGCTGTCAGAAGACAGA  645

seq1  TCCAGTGCACTGCTGAGACCCACAAGGCACTCACGGCACGCCTGCCTTTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGTGCACTGCTGAGACCCACAAGGCACTCACGGCACGCCTGCCTTTC  695

seq1  TCAGTTAACTCTCCCCACGGACTGGAAATAAGCCAAGGAGATCGTAACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTAACTCTCCCCACGGACTGGAAATAAGCCAAGGAGATCGTAACCT  745

seq1  CAGAGAGCCTGGGACACCTCCTTTAACTTCCGTTCCCTAAAAGATGACTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCCTGGGACACCTCCTTTAACTTCCGTTCCCTAAAAGATGACTC  795

seq1  TGGAGGACAAGGAAGTTCTTCTAGGTGAAGGTCTTCCCTAGACTAGAGAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGACAAGGAAGTTCTTCTAGGTGAAGGTCTTCCCTAGACTAGAGAA  845

seq1  TTTCTCTAAAAGAAGAGTGGCCGTTTTTCTTTCTTTACTTATGTGCATTA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAAAAGAAGAGTGGCCGTTTTTCTTTCTTTACTTATGTGCATTA  895

seq1  ATTTCTCTCCCTTCTTTTCTTCCCTCAGACATGGAATTC  938
      |||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTCCCTTCTTTTCTTCCCTCAGACATGGAATTC  934