BAC Information

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BAC

Clone NameB6Ng01-108A12
Chromosome16 (Build37)
Map Location 76,235,666 - 76,386,638
singlet/doubletdoublet
Overlap geneLOC100039457, Nrip1
Upstream geneD930038D03Rik, Rbm11, Stch, LOC546667, Samsn1, 4930578N18Rik
Downstream geneLOC100039316, 1700063K16Rik, LOC665120, Usp25
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108A12.bB6Ng01-108A12.g
ACCDH915325DH915326
length1,1741,107
definitionDH915325|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A12, 5' end.DH915326|Mus musculus domesticus DNA, BAC clone: B6Ng01-108A12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(76,385,461 - 76,386,638)(76,235,666 - 76,236,735)
sequence
gaattctctccactgccagacacatttcatgttcctttaaaggtgatgtt
gagcacacttatgcccgaattacatagctcagttcacttcagagctttcc
tgctattttctatcacttcccttccacacaccattcaggcaggattaaat
tatccacgctttaaacagaagacacggtgaagtaatgggagtccacctgg
cttcttggatggattaattaagcacaccagccatctctagggtagaaaga
actataaatttggttctttgataaagaactggatgttccccttcccgtca
taaaaattgtccaagaaaagtgttcattcgaggtagggctgccctaatct
taaactttcttattcatgttatgtaatcgaagaaaaacatttaaagtata
gtttgcaaatgataggtcttccattgttttttagtatatatcaaacttcc
actttttaaaagaatccatatgattttctccagaccttaataaggagtct
acaccaacaatttgctccttcattaacagaagttagcaaacctgctccag
gagtaggcttcctgaagaaggaactcagtcaaggtttcttataattgttc
aacaaatgaaaccccggtagaaccctttctctggaatcctctgagaactt
ggtaaactaaactaagcacggatctatgctctctgtaaacgtgatcccat
aagaaacaagactctagtgtccctactggtcgcacaagccagagagcaaa
tggcgattttgaagactgcctgggagctaacttagtccactgctatctca
tttttttaagaatggaaagtcgtcaaacatagataggtgtttttaacagc
ataacttgtgaactgttgcatcaaaaagttcaggaggatgagaatgactg
cgtaggcctgtggagagtcaagaagtttgatgagctgtatcatgaatctc
tgagagaggcttgaactgtctgtgaaccatacctgaaatcccaaggaaac
catagctttggttcctaatgttgtctttggggcagcgtatttatgtggac
tatccagcactcttatctgtcagctctacctgacatacgacatgcctcat
gacacctttggagaggcttagaaaatgggaactcctacgttaatcctccc
tcaagagcacactcttagacagtt
gaattctcacctgaggaataccgaatggctgagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccatctcacaccagtcagaatagctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaagactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactactggaagatccagcaatacctctcctaggc
atatacccagaagttgttccaaccggtaagaaggacacatgctccactat
gttcatagcagccttattcataaagtctccactgtcatttctcctgctcc
ctcatctcctgttggtacagtgagtctcagactggtagaactcagacaga
atcaatgaggaagggagccaggggtgctatgccactaatcagactgtggc
acgggacaagggaagatgggccttgaatgaagagacaaaacggaacactg
gtcctcctaagactcagaccacaagttcacgatgtcttttagcttttata
ggtcagtcttgattttcattgtttatttgttaacttagtatatccaagta
gtcccaaagcttgtcttttccaacgctatcatttcccctggctccaagtc
tctctcttattgtgcagtttcatggaaataacccagaatttaattgtctt
cctttcaattattgtacttttaatgaattacttgttatcgtctgtgaaac
caaaagctaaagtataatcagtttatgaagacatccatttataagaaaaa
acataaacacattttatgaaagttaggtaaagtcaacttggggttaaatt
gtatctcttatgcctgtcaaatgcacccgtcacaattctgagcagataca
tatgaattctgaaagatgtgggaatgcagtgacttttttttttcatgtca
acctttgtttcctttcagataccaagaaaactatttattttctactgcat
tgtttgtaggcttaaagagcaaatggaagggaagagctcagcgttggaat
ggatgtc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_76385461_76386638
seq2: B6Ng01-108A12.b_47_1220 (reverse)

seq1  AACTG-CTAAGATGGTGCTCTATGAGGGAGGAATAAAGGTAGGGATGTCC  49
      ||||| ||||||  ||||||| ||||||||| || || ||| |||  |||
seq2  AACTGTCTAAGAGTGTGCTCT-TGAGGGAGG-ATTAACGTA-GGAGTTCC  47

seq1  CATTATCTGAGCCTCTCCAAA-GTGTCATTGAGCATGTCGTATGTCAGGT  98
      |||| ||| |||||||||||| |||||||   ||||||||||||||||||
seq2  CATTTTCTAAGCCTCTCCAAAGGTGTCATGAGGCATGTCGTATGTCAGGT  97

seq1  AGAGCTTGACAGAT-AGAGTGCTGGATAGTCCAACATAAAATACGCTGCC  147
      ||||| |||||||| ||||||||||||||||| |||| ||||||||||||
seq2  AGAGC-TGACAGATAAGAGTGCTGGATAGTCC-ACAT-AAATACGCTGCC  144

seq1  CCAAAGACAACATTAAGGAACCAAAGCTATGGTTTCCTTGGGATTTCAGG  197
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  CCAAAGACAACATT-AGGAACCAAAGCTATGGTTTCCTTGGGATTTCAGG  193

seq1  TATGGTTCACAGACAGTTCAAGCCTCTCTCAGAGATTCATGATACAGCTC  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTTCACAGACAGTTCAAGCCTCTCTCAGAGATTCATGATACAGCTC  243

seq1  ATCAAACTTCTTGACTCTCCACAGGCCTACGCAGTCATTCTCATCCTCCT  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAACTTCTTGACTCTCCACAGGCCTACGCAGTCATTCTCATCCTCCT  293

seq1  GAACTTTTTGATGCAACAGTTCACAAGTTATGCTGTTAAAAACACCTATC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTTTGATGCAACAGTTCACAAGTTATGCTGTTAAAAACACCTATC  343

seq1  TATGTTTGACGACTTTCCATTCTTAAAAAAATGAGATAGCAGTGGACTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTTGACGACTTTCCATTCTTAAAAAAATGAGATAGCAGTGGACTAA  393

seq1  GTTAGCTCCCAGGCAGTCTTCAAAATCGCCATTTGCTCTCTGGCTTGTGC  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGCTCCCAGGCAGTCTTCAAAATCGCCATTTGCTCTCTGGCTTGTGC  443

seq1  GACCAGTAGGGACACTAGAGTCTTGTTTCTTATGGGATCACGTTTACAGA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAGTAGGGACACTAGAGTCTTGTTTCTTATGGGATCACGTTTACAGA  493

seq1  GAGCATAGATCCGTGCTTAGTTTAGTTTACCAAGTTCTCAGAGGATTCCA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAGATCCGTGCTTAGTTTAGTTTACCAAGTTCTCAGAGGATTCCA  543

seq1  GAGAAAGGGTTCTACCGGGGTTTCATTTGTTGAACAATTATAAGAAACCT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAAGGGTTCTACCGGGGTTTCATTTGTTGAACAATTATAAGAAACCT  593

seq1  TGACTGAGTTCCTTCTTCAGGAAGCCTACTCCTGGAGCAGGTTTGCTAAC  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTGAGTTCCTTCTTCAGGAAGCCTACTCCTGGAGCAGGTTTGCTAAC  643

seq1  TTCTGTTAATGAAGGAGCAAATTGTTGGTGTAGACTCCTTATTAAGGTCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTAATGAAGGAGCAAATTGTTGGTGTAGACTCCTTATTAAGGTCT  693

seq1  GGAGAAAATCATATGGATTCTTTTAAAAAGTGGAAGTTTGATATATACTA  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAATCATATGGATTCTTTTAAAAAGTGGAAGTTTGATATATACTA  743

seq1  AAAAACAATGGAAGACCTATCATTTGCAAACTATACTTTAAATGTTTTTC  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACAATGGAAGACCTATCATTTGCAAACTATACTTTAAATGTTTTTC  793

seq1  TTCGATTACATAACATGAATAAGAAAGTTTAAGATTAGGGCAGCCCTACC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATTACATAACATGAATAAGAAAGTTTAAGATTAGGGCAGCCCTACC  843

seq1  TCGAATGAACACTTTTCTTGGACAATTTTTATGACGGGAAGGGGAACATC  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGAATGAACACTTTTCTTGGACAATTTTTATGACGGGAAGGGGAACATC  893

seq1  CAGTTCTTTATCAAAGAACCAAATTTATAGTTCTTTCTACCCTAGAGATG  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTCTTTATCAAAGAACCAAATTTATAGTTCTTTCTACCCTAGAGATG  943

seq1  GCTGGTGTGCTTAATTAATCCATCCAAGAAGCCAGGTGGACTCCCATTAC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGTGCTTAATTAATCCATCCAAGAAGCCAGGTGGACTCCCATTAC  993

seq1  TTCACCGTGTCTTCTGTTTAAAGCGTGGATAATTTAATCCTGCCTGAATG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACCGTGTCTTCTGTTTAAAGCGTGGATAATTTAATCCTGCCTGAATG  1043

seq1  GTGTGTGGAAGGGAAGTGATAGAAAATAGCAGGAAAGCTCTGAAGTGAAC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGGAAGGGAAGTGATAGAAAATAGCAGGAAAGCTCTGAAGTGAAC  1093

seq1  TGAGCTATGTAATTCGGGCATAAGTGTGCTCAACATCACCTTTAAAGGAA  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCTATGTAATTCGGGCATAAGTGTGCTCAACATCACCTTTAAAGGAA  1143

seq1  CATGAAATGTGTCTGGCAGTGGAGAGAATTC  1178
      |||||||||||||||||||||||||||||||
seq2  CATGAAATGTGTCTGGCAGTGGAGAGAATTC  1174

seq1: chr16_76235666_76236735
seq2: B6Ng01-108A12.g_116_1174

seq1  TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAG  50

seq1  ATTCCATCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGGTGACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCATCTCACACCAGTCAGAATAGCTAAGATCAAAAATTCAGGTGACA  100

seq1  GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAGACTCCTCCATTGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGATGCTGGCGAGGATGTGGAGAAAGAGGAAGACTCCTCCATTGTTGG  150

seq1  TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCT  200

seq1  CAGAAAATTGGACATAGTACTACTGGAAGATCCAGCAATACCTCTCCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAATTGGACATAGTACTACTGGAAGATCCAGCAATACCTCTCCTAG  250

seq1  GCATATACCCAGAAGTTGTTCCAACCGGTAAGAAGGACACATGCTCCACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATATACCCAGAAGTTGTTCCAACCGGTAAGAAGGACACATGCTCCACT  300

seq1  ATGTTCATAGCAGCCTTATTCATAAAGTCTCCACTGTCATTTCTCCTGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCATAGCAGCCTTATTCATAAAGTCTCCACTGTCATTTCTCCTGCT  350

seq1  CCCTCATCTCCTGTTGGTACAGTGAGTCTCAGACTGGTAGAACTCAGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCATCTCCTGTTGGTACAGTGAGTCTCAGACTGGTAGAACTCAGACA  400

seq1  GAATCAATGAGGAAGGGAGCCAGGGGTGCTATGCCACTAATCAGACTGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCAATGAGGAAGGGAGCCAGGGGTGCTATGCCACTAATCAGACTGTG  450

seq1  GCACGGGACAAGGGAAGATGGGCCTTGAATGAAGAGACAAAACGGAACAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGGGACAAGGGAAGATGGGCCTTGAATGAAGAGACAAAACGGAACAC  500

seq1  TGGTCCTCCTAAGACTCAGACCACAAGTTCACGATGTCTTTTAGCTTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCCTCCTAAGACTCAGACCACAAGTTCACGATGTCTTTTAGCTTTTA  550

seq1  TAGGTCAGTCTTGATTTTCATTGTTTATTTGTTAACTTAGTATATCCAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTCAGTCTTGATTTTCATTGTTTATTTGTTAACTTAGTATATCCAAG  600

seq1  TAGTCCCAAAGCTTGTCTTTTCCAACGCTATCATTTCCCCTGGCTCCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCCCAAAGCTTGTCTTTTCCAACGCTATCATTTCCCCTGGCTCCAAG  650

seq1  TCTCTCTCTTATTGTGCAGTTTCATGGAAATAACCCAGAATTTAATTGTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTTATTGTGCAGTTTCATGGAAATAACCCAGAATTTAATTGTC  700

seq1  TTCCTTTCAATTATTGTACTTTTAATGAATTACTTGTTATCGTCTGTGAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCAATTATTGTACTTTTAATGAATTACTTGTTATCGTCTGTGAA  750

seq1  ACCAAAAGCTAAAGTATAATCAGTTTATGAAGACATCCATTTATAAGAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAAGCTAAAGTATAATCAGTTTATGAAGACATCCATTTATAAGAAA  800

seq1  AAACATAAACACATTTTATGAAAGTTAGGTAAAGTCAACTTGGGGTTAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATAAACACATTTTATGAAAGTTAGGTAAAGTCAACTTGGGGTTAAA  850

seq1  TTGTTATCTCTTATGCCTGTCAAAATGCACCCGTCACAATTCTGAGCAGA  900
      ||| ||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTG-TATCTCTTATGCCTGTC-AAATGCACCCGTCACAATTCTGAGCAGA  898

seq1  TACAATATGAATTCTGAAAGATGTGGGGAATGCAGTGACTTTTTTTTTTT  950
      ||| |||||||||||||||||||| |||||||||||||| ||||||||||
seq2  TAC-ATATGAATTCTGAAAGATGT-GGGAATGCAGTGAC-TTTTTTTTTT  945

seq1  CATGTCAACCTTTGTTTCCTTTCAGATACCAAGAAAACTATTTA-TTTCT  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CATGTCAACCTTTGTTTCCTTTCAGATACCAAGAAAACTATTTATTTTCT  995

seq1  ACTGCATTGTTTGTTAGGGCTAAAGAGGAAGCAAATGGGAAGGGAAAGAG  1049
      ||||||||||||| ||||  |||||    ||||||| ||||||| |||||
seq2  ACTGCATTGTTTG-TAGGCTTAAAG----AGCAAAT-GGAAGGG-AAGAG  1038

seq1  CTCAGCGTGGGATTGGATGTC  1070
      |||||||| ||| ||||||||
seq2  CTCAGCGTTGGAATGGATGTC  1059