BAC Information

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BAC

Clone NameB6Ng01-108C20
Chromosome16 (Build37)
Map Location 46,652,687 - 46,735,137
singlet/doubletdoublet
Overlap genenone
Upstream geneBC016579, Tmprss7, Tagln3, Abhd10, Phldb2, EG667418, Plcxd2, 4930546O09Rik, Cd96, AL024110, Pvrl3
Downstream geneLOC628757, LOC628776
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-108C20.bB6Ng01-108C20.g
ACCDH915431DH915432
length1,090873
definitionDH915431|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C20, 5' end.DH915432|Mus musculus domesticus DNA, BAC clone: B6Ng01-108C20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,652,687 - 46,653,796)(46,734,264 - 46,735,137)
sequence
gaattcaagcaagctgagagaagatacacatcacttgcttctaaggaaat
ttctcaattgttttgtaccttatttttttatttccaactccatgacaaca
gaatataatttatagacagcatgagggttgcagggtgatatgatgtatat
aaactgatcagtgcaatgcttagcatacagaaccctgaataagtgaaacc
cagttgctattccaataggtaaaaataacaaatgtttttccttggtatat
tggggataggtaaatacataaatacagcgcagtatttactagttgaataa
gtacttatgtggtttgctatagatcatatgctcagatgtgaagaattctc
ccttagactaccagagttgacaaaattactttcaaagactacattcttaa
gatttcttcacactgggattaagatgtcagaaatgtttctaaaagataaa
atcagcagtgagtagtggttcaccctcctaccatcttagtgatatggaac
ttgatttagaccttttctgaccttaaaaaaaaaaaaagaaaaaaagaaaa
aagaggaagggtaaaaggaaagataaaagtaagaaagaattggcccagag
ataaagaaaacagagagcaaagtgatgatgtttatttgaagataaatttt
actttcataattttgccaaggttttagaaaaattaatactctaaagaaat
atggtagttagtcaaaggcttcaagagtcaataaaaatctgataggtttt
taatttgtgaatcaatattttaatttcatataagcaaatgcagattttaa
gtggaattttgaacttccatatttgttgggtagtacagttactgacagta
ttttaatatggtttttcttaatgctcccagcaggaattttattacctttg
tggcctgttatgaacagattaaaaactttcctcactgttttttttttttg
tacatggctgtctctgtcagcctttctttgaggataaactattttctatg
catacatccttgtgtaccaaactgacattatcatatgtgacgatagatta
ttgtaatacagcctaaaggtcagagcactgtgtatacaat
gaattccaaaaagtgacacggtagagtggctaagagctctgaattacact
gtgactgctttttgggtcctgcttctgctttgctaatgggattcatgaga
ctaggtgaattgttttccattttggtggtgaagattaggtagggtacttg
tgtagtggatattgccactaggccttattaacggtgtgcctttattggga
cagatcatcagcagcagcagcagcagcattattattaatgtcaattgtaa
tatagcttctcatcagtcataaaaggaagaagagaaagaatggattattt
ttagctagtacttttgttcttttggagaatcacctttatttggaaggaat
ctcctcggcacagtcagtgtgactgcagatgcaggactgtcttagttgtc
ttactgctgtgatcaaatatctgacaaaagctaccaaggagaagcagaaa
ttattctgactcccatgctgggagtagagtgaattatagcaaggaatgtg
tgtcaacagaaaagaagctaaccacactgcagtcaaagtcaaaaagctca
cgtcctcctttttatttactccagtgatgagcttattacattcagggtat
gtctcccctgttcagttaaatatttctggaaatatcttaaactcatggtg
gctttaaatcccaccaacttaaggatcatggctcgtcattagaaggaccc
agcatttcaggcattaactagcaacaagacagttagcttccccagctgca
tatgtagcacaagatggccttatctggcatcaatgggagggaggcctttt
gtcctgtgaagacttgatgccccagcataggagaatgctagggcaggagg
cagaagtgggtggggtgggttgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr16_46652687_46653796
seq2: B6Ng01-108C20.b_44_1133

seq1  GAATTCAAGCAAGCTGAGAGAAGATACACATCACTTGCTTCTAAGGAAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGCAAGCTGAGAGAAGATACACATCACTTGCTTCTAAGGAAAT  50

seq1  TTCTCAATTGTTTTGTACCTTATTTTTTTATTTCCAACTCCATGACAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAATTGTTTTGTACCTTATTTTTTTATTTCCAACTCCATGACAACA  100

seq1  GAATATAATTTATAGACAGCATGAGGGTTGCAGGGTGATATGATGTATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATAATTTATAGACAGCATGAGGGTTGCAGGGTGATATGATGTATAT  150

seq1  AAACTGATCAGTGCAATGCTTAGCATACAGAACCCTGAATAAGTGAAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGATCAGTGCAATGCTTAGCATACAGAACCCTGAATAAGTGAAACC  200

seq1  CAGTTGCTATTCCAATAGGTAAAAATAACAAATGTTTTTCCTTGGTATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGCTATTCCAATAGGTAAAAATAACAAATGTTTTTCCTTGGTATAT  250

seq1  TGGGGATAGGTAAATACATAAATACAGCGCAGTATTTACTAGTTGAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGATAGGTAAATACATAAATACAGCGCAGTATTTACTAGTTGAATAA  300

seq1  GTACTTATGTGGTTTGCTATAGATCATATGCTCAGATGTGAAGAATTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTTATGTGGTTTGCTATAGATCATATGCTCAGATGTGAAGAATTCTC  350

seq1  CCTTAGACTACCAGAGTTGACAAAATTACTTTCAAAGACTACATTCTTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGACTACCAGAGTTGACAAAATTACTTTCAAAGACTACATTCTTAA  400

seq1  GATTTCTTCACACTGGGATTAAGATGTCAGAAATGTTTCTAAAAGATAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCTTCACACTGGGATTAAGATGTCAGAAATGTTTCTAAAAGATAAA  450

seq1  ATCAGCAGTGAGTAGTGGTTCACCCTCCTACCATCTTAGTGATATGGAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGCAGTGAGTAGTGGTTCACCCTCCTACCATCTTAGTGATATGGAAC  500

seq1  TTGATTTAGACCTTTTCTGACCTTAAAAAAAAAAAAAGAAAAAAAGAAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATTTAGACCTTTTCTGACCTTAAAAAAAAAAAAAGAAAAAAAGAAAA  550

seq1  AAGAGGAAGGGTAAAAGGAAAGATAAAAGTAAGAAAGAATTGGCCCAGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGAAGGGTAAAAGGAAAGATAAAAGTAAGAAAGAATTGGCCCAGAG  600

seq1  ATAAAGAAAACAGAGAGCAAAGTGATGATGTTTATTTGAAGATAAATTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAGAAAACAGAGAGCAAAGTGATGATGTTTATTTGAAGATAAATTTT  650

seq1  ACTTTCATAATTTTGCCAAGGTTTTAGAAAAATTAATACTCTAAAGAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCATAATTTTGCCAAGGTTTTAGAAAAATTAATACTCTAAAGAAAT  700

seq1  ATGGTAGTTAGTCAAAGGCTTCAAGAGTCAATAAAAATCTGATAGGTTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTAGTTAGTCAAAGGCTTCAAGAGTCAATAAAAATCTGATAGGTTTT  750

seq1  TAATTTGTGAATCAATATTTTAATTTCATATAAGCAAATGCAGATTTTAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTGTGAATCAATATTTTAATTTCATATAAGCAAATGCAGATTTTAA  800

seq1  GTGGAATTTTGAACTTCCATATTTGTTGGGTAGTACAGTTACTGACAGTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAATTTTGAACTTCCATATTTGTTGGGTAGTACAGTTACTGACAGTA  850

seq1  TTTTAATATGGTTTTTCTTAATGCTCCCAGCAGGGAATTTTATTACCTTT  900
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TTTTAATATGGTTTTTCTTAATGCTCCCAGCA-GGAATTTTATTACCTTT  899

seq1  GTGGCCTGTTATGAACAGATTAAAAAACTTTCCTCACTGTTTTTTTTTTT  950
      ||||||||||||||||||||| ||||||||||||||||| ||||||||||
seq2  GTGGCCTGTTATGAACAGATT-AAAAACTTTCCTCACTG-TTTTTTTTTT  947

seq1  TTGTACATGGCTGTCTCTGTCAGCCTTTCTTTGAGGATAAACTATTTTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTACATGGCTGTCTCTGTCAGCCTTTCTTTGAGGATAAACTATTTTCT  997

seq1  AATGCATACAATCCTTGGTGTTACCAAACTGACAATTTATCATATTGTTT  1050
       |||||||| |||||| ||| |||||||||||||  ||||||||     |
seq2  -ATGCATAC-ATCCTT-GTG-TACCAAACTGACA--TTATCATA-----T  1036

seq1  GGAAGGATAGATATTTGTAAATTACAGCCTTTAAAAAGTCAAGAGCACTG  1100
      |  | |||||||  ||||||  ||||||||   ||| ||| |||||||||
seq2  GTGACGATAGATTATTGTAA--TACAGCCT---AAAGGTC-AGAGCACTG  1080

seq1  TGTATACAAT  1110
      ||||||||||
seq2  TGTATACAAT  1090

seq1: chr16_46734264_46735137
seq2: B6Ng01-108C20.g_65_937 (reverse)

seq1  CCAACCCA-CCCACCCACTTCTGCCTCCCTGCCCTAGCATTCTCCTATGC  49
      |||||||| ||||||||||||||||| |||||||||||||||||||||||
seq2  CCAACCCACCCCACCCACTTCTGCCT-CCTGCCCTAGCATTCTCCTATGC  49

seq1  TGGGGCATCAAGTCTTCACAGGACAAAAGGCCTCCCCTCCCATTGATGCC  99
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TGGGGCATCAAGTCTTCACAGGACAAAAGGCCT-CCCTCCCATTGATGCC  98

seq1  AGATAAGGCCATCTTGTGCTACATATGCAGCTGGGGAAGCTAACTGTCTT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAAGGCCATCTTGTGCTACATATGCAGCTGGGGAAGCTAACTGTCTT  148

seq1  GTTGCTAGTTAATGCCTGAAATGCTGGGTCCTTCTAATGACGAGCCATGA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGCTAGTTAATGCCTGAAATGCTGGGTCCTTCTAATGACGAGCCATGA  198

seq1  TCCTTAAGTTGGTGGGATTTAAAGCCACCATGAGTTTAAGATATTTCCAG  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGTTGGTGGGATTTAAAGCCACCATGAGTTTAAGATATTTCCAG  248

seq1  AAATATTTAACTGAACAGGGGAGACATACCCTGAATGTAATAAGCTCATC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATTTAACTGAACAGGGGAGACATACCCTGAATGTAATAAGCTCATC  298

seq1  ACTGGAGTAAATAAAAAGGAGGACGTGAGCTTTTTGACTTTGACTGCAGT  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGGAGTAAATAAAAAGGAGGACGTGAGCTTTTTGACTTTGACTGCAGT  348

seq1  GTGGTTAGCTTCTTTTCTGTTGACACACATTCCTTGCTATAATTCACTCT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTTAGCTTCTTTTCTGTTGACACACATTCCTTGCTATAATTCACTCT  398

seq1  ACTCCCAGCATGGGAGTCAGAATAATTTCTGCTTCTCCTTGGTAGCTTTT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCCAGCATGGGAGTCAGAATAATTTCTGCTTCTCCTTGGTAGCTTTT  448

seq1  GTCAGATATTTGATCACAGCAGTAAGACAACTAAGACAGTCCTGCATCTG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATATTTGATCACAGCAGTAAGACAACTAAGACAGTCCTGCATCTG  498

seq1  CAGTCACACTGACTGTGCCGAGGAGATTCCTTCCAAATAAAGGTGATTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCACACTGACTGTGCCGAGGAGATTCCTTCCAAATAAAGGTGATTCT  548

seq1  CCAAAAGAACAAAAGTACTAGCTAAAAATAATCCATTCTTTCTCTTCTTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAAGAACAAAAGTACTAGCTAAAAATAATCCATTCTTTCTCTTCTTC  598

seq1  CTTTTATGACTGATGAGAAGCTATATTACAATTGACATTAATAATAATGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGACTGATGAGAAGCTATATTACAATTGACATTAATAATAATGC  648

seq1  TGCTGCTGCTGCTGCTGATGATCTGTCCCAATAAAGGCACACCGTTAATA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCTGCTGCTGCTGATGATCTGTCCCAATAAAGGCACACCGTTAATA  698

seq1  AGGCCTAGTGGCAATATCCACTACACAAGTACCCTACCTAATCTTCACCA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAGTGGCAATATCCACTACACAAGTACCCTACCTAATCTTCACCA  748

seq1  CCAAAATGGAAAACAATTCACCTAGTCTCATGAATCCCATTAGCAAAGCA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATGGAAAACAATTCACCTAGTCTCATGAATCCCATTAGCAAAGCA  798

seq1  GAAGCAGGACCCAAAAAGCAGTCACAGTGTAATTCAGAGCTCTTAGCCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCAGGACCCAAAAAGCAGTCACAGTGTAATTCAGAGCTCTTAGCCAC  848

seq1  TCTACCGTGTCACTTTTTGGAATTC  874
      |||||||||||||||||||||||||
seq2  TCTACCGTGTCACTTTTTGGAATTC  873